data_8D6H
#
_model_server_result.job_id            fJ8ZnnEpYPY7K6stApGsJw 
_model_server_result.datetime_utc      '2024-11-15 12:58:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8d6h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":309}' 
#
_entry.id    8D6H 
#
_exptl.entry_id    8D6H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.102 
_cell.angle_gamma         90 
_cell.entry_id            8D6H 
_cell.length_a            29.698 
_cell.length_b            66.972 
_cell.length_c            63.817 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8D6H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             108 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              108 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            I 
_struct_conn.ptnr2_label_atom_id            C16 
_struct_conn.ptnr2_label_comp_id            RH6 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RH6 
_struct_conn.ptnr2_auth_seq_id              308 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.428 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 135 n n 
C1 C2 GOL sing 136 n n 
C1 H11 GOL sing 137 n n 
C1 H12 GOL sing 138 n n 
O1 HO1 GOL sing 139 n n 
C2 O2 GOL sing 140 n n 
C2 C3 GOL sing 141 n n 
C2 H2 GOL sing 142 n n 
O2 HO2 GOL sing 143 n n 
C3 O3 GOL sing 144 n n 
C3 H31 GOL sing 145 n n 
C3 H32 GOL sing 146 n n 
O3 HO3 GOL sing 147 n n 
#
_atom_sites.entry_id                     8D6H 
_atom_sites.fract_transf_matrix[1][1]    0.033672 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001236 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014932 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01568 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 301 301 GOL GOL . 
C 2 GOL A 1 302 401 GOL GOL . 
D 2 GOL A 1 303 501 GOL GOL . 
E 2 GOL A 1 304 601 GOL GOL . 
F 3 ACT A 1 305 701 ACT ACT . 
G 3 ACT A 1 306 801 ACT ACT . 
H 3 ACT A 1 307 901 ACT ACT . 
I 4 RH6 A 1 308 201 RH6 LIG . 
J 2 GOL A 1 309 1 GOL GOL . 
K 2 GOL A 1 310 2 GOL GOL . 
L 2 GOL A 1 311 3 GOL GOL . 
M 2 GOL A 1 312 5 GOL GOL . 
N 2 GOL A 1 313 6 GOL GOL . 
O 2 GOL A 1 314 7 GOL GOL . 
P 2 GOL A 1 315 8 GOL GOL . 
Q 5 HOH A 1 401 38 HOH HOH . 
Q 5 HOH A 2 402 61 HOH HOH . 
Q 5 HOH A 3 403 52 HOH HOH . 
Q 5 HOH A 4 404 70 HOH HOH . 
Q 5 HOH A 5 405 35 HOH HOH . 
Q 5 HOH A 6 406 42 HOH HOH . 
Q 5 HOH A 7 407 43 HOH HOH . 
Q 5 HOH A 8 408 67 HOH HOH . 
Q 5 HOH A 9 409 25 HOH HOH . 
Q 5 HOH A 10 410 74 HOH HOH . 
Q 5 HOH A 11 411 29 HOH HOH . 
Q 5 HOH A 12 412 24 HOH HOH . 
Q 5 HOH A 13 413 31 HOH HOH . 
Q 5 HOH A 14 414 56 HOH HOH . 
Q 5 HOH A 15 415 40 HOH HOH . 
Q 5 HOH A 16 416 51 HOH HOH . 
Q 5 HOH A 17 417 17 HOH HOH . 
Q 5 HOH A 18 418 55 HOH HOH . 
Q 5 HOH A 19 419 54 HOH HOH . 
Q 5 HOH A 20 420 44 HOH HOH . 
Q 5 HOH A 21 421 34 HOH HOH . 
Q 5 HOH A 22 422 27 HOH HOH . 
Q 5 HOH A 23 423 33 HOH HOH . 
Q 5 HOH A 24 424 19 HOH HOH . 
Q 5 HOH A 25 425 28 HOH HOH . 
Q 5 HOH A 26 426 60 HOH HOH . 
Q 5 HOH A 27 427 11 HOH HOH . 
Q 5 HOH A 28 428 8 HOH HOH . 
Q 5 HOH A 29 429 39 HOH HOH . 
Q 5 HOH A 30 430 16 HOH HOH . 
Q 5 HOH A 31 431 2 HOH HOH . 
Q 5 HOH A 32 432 13 HOH HOH . 
Q 5 HOH A 33 433 20 HOH HOH . 
Q 5 HOH A 34 434 6 HOH HOH . 
Q 5 HOH A 35 435 46 HOH HOH . 
Q 5 HOH A 36 436 14 HOH HOH . 
Q 5 HOH A 37 437 26 HOH HOH . 
Q 5 HOH A 38 438 22 HOH HOH . 
Q 5 HOH A 39 439 65 HOH HOH . 
Q 5 HOH A 40 440 23 HOH HOH . 
Q 5 HOH A 41 441 50 HOH HOH . 
Q 5 HOH A 42 442 9 HOH HOH . 
Q 5 HOH A 43 443 48 HOH HOH . 
Q 5 HOH A 44 444 7 HOH HOH . 
Q 5 HOH A 45 445 49 HOH HOH . 
Q 5 HOH A 46 446 10 HOH HOH . 
Q 5 HOH A 47 447 53 HOH HOH . 
Q 5 HOH A 48 448 12 HOH HOH . 
Q 5 HOH A 49 449 3 HOH HOH . 
Q 5 HOH A 50 450 41 HOH HOH . 
Q 5 HOH A 51 451 32 HOH HOH . 
Q 5 HOH A 52 452 45 HOH HOH . 
Q 5 HOH A 53 453 30 HOH HOH . 
Q 5 HOH A 54 454 76 HOH HOH . 
Q 5 HOH A 55 455 1 HOH HOH . 
Q 5 HOH A 56 456 5 HOH HOH . 
Q 5 HOH A 57 457 73 HOH HOH . 
Q 5 HOH A 58 458 21 HOH HOH . 
Q 5 HOH A 59 459 57 HOH HOH . 
Q 5 HOH A 60 460 36 HOH HOH . 
Q 5 HOH A 61 461 37 HOH HOH . 
Q 5 HOH A 62 462 4 HOH HOH . 
Q 5 HOH A 63 463 64 HOH HOH . 
Q 5 HOH A 64 464 66 HOH HOH . 
Q 5 HOH A 65 465 68 HOH HOH . 
Q 5 HOH A 66 466 59 HOH HOH . 
Q 5 HOH A 67 467 77 HOH HOH . 
Q 5 HOH A 68 468 15 HOH HOH . 
Q 5 HOH A 69 469 63 HOH HOH . 
Q 5 HOH A 70 470 18 HOH HOH . 
Q 5 HOH A 71 471 58 HOH HOH . 
Q 5 HOH A 72 472 62 HOH HOH . 
Q 5 HOH A 73 473 75 HOH HOH . 
Q 5 HOH A 74 474 47 HOH HOH . 
Q 5 HOH A 75 475 69 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 2 27.673 -18.126 28.984 1 67.83 ? C1 GOL 309 A 1 
HETATM 2 O O1 GOL . . . J 2 28.188 -19.206 29.704 1 68.08 ? O1 GOL 309 A 1 
HETATM 3 C C2 GOL . . . J 2 26.97 -17.204 30.006 1 65.17 ? C2 GOL 309 A 1 
HETATM 4 O O2 GOL . . . J 2 27.769 -16.961 31.111 1 66.94 ? O2 GOL 309 A 1 
HETATM 5 C C3 GOL . . . J 2 25.671 -17.948 30.382 1 64.35 ? C3 GOL 309 A 1 
HETATM 6 O O3 GOL . . . J 2 26.033 -18.941 31.295 1 62.43 ? O3 GOL 309 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#