data_8D6L # _model_server_result.job_id M5Bv6QoRp99irDXqk7Q3IA _model_server_result.datetime_utc '2024-11-15 14:26:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8d6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 8D6L # _exptl.entry_id 8D6L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 257.328 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E)-3-[7-(diethylamino)-2-oxo-2H-1-benzopyran-3-yl]prop-2-enal,bound form' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.275 _cell.angle_gamma 90 _cell.entry_id 8D6L _cell.length_a 29.613 _cell.length_b 67.25 _cell.length_c 63.687 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8D6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 108 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 108 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id C16 _struct_conn.ptnr2_label_comp_id RH6 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RH6 _struct_conn.ptnr2_auth_seq_id 405 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.266 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H19 N O2' _chem_comp.formula_weight 257.328 _chem_comp.id RH6 _chem_comp.mon_nstd_flag . _chem_comp.name '(2E)-3-[7-(diethylamino)-2-oxo-2H-1-benzopyran-3-yl]prop-2-enal, bound form' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C15 RH6 sing 273 n n C15 C14 RH6 doub 274 e n C14 C13 RH6 sing 275 n n C19 C13 RH6 doub 276 n n C19 C20 RH6 sing 277 n n C13 C11 RH6 sing 278 n n O12 C11 RH6 doub 279 n n C20 C21 RH6 doub 280 n y C20 C09 RH6 sing 281 n y C21 C01 RH6 sing 282 n y C11 O10 RH6 sing 283 n n O10 C09 RH6 sing 284 n n C09 C08 RH6 doub 285 n y C01 C02 RH6 doub 286 n y C08 C02 RH6 sing 287 n y C02 N03 RH6 sing 288 n n N03 C04 RH6 sing 289 n n N03 C06 RH6 sing 290 n n C04 C05 RH6 sing 291 n n C07 C06 RH6 sing 292 n n C15 H1 RH6 sing 293 n n C21 H2 RH6 sing 294 n n C01 H3 RH6 sing 295 n n C04 H4 RH6 sing 296 n n C04 H5 RH6 sing 297 n n C05 H6 RH6 sing 298 n n C05 H7 RH6 sing 299 n n C05 H8 RH6 sing 300 n n C06 H9 RH6 sing 301 n n C06 H10 RH6 sing 302 n n C07 H11 RH6 sing 303 n n C07 H12 RH6 sing 304 n n C07 H13 RH6 sing 305 n n C08 H14 RH6 sing 306 n n C14 H15 RH6 sing 307 n n C16 H16 RH6 sing 308 n n C16 H17 RH6 sing 309 n n C16 H18 RH6 sing 310 n n C19 H19 RH6 sing 311 n n # _atom_sites.entry_id 8D6L _atom_sites.fract_transf_matrix[1][1] 0.033769 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001342 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01487 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015714 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 401 GOL GOL . C 2 GOL A 1 402 601 GOL GOL . D 2 GOL A 1 403 801 GOL GOL . E 2 GOL A 1 404 901 GOL GOL . F 3 RH6 A 1 405 1001 RH6 CM1 . G 4 HOH A 1 501 36 HOH HOH . G 4 HOH A 2 502 16 HOH HOH . G 4 HOH A 3 503 15 HOH HOH . G 4 HOH A 4 504 29 HOH HOH . G 4 HOH A 5 505 46 HOH HOH . G 4 HOH A 6 506 45 HOH HOH . G 4 HOH A 7 507 3 HOH HOH . G 4 HOH A 8 508 6 HOH HOH . G 4 HOH A 9 509 5 HOH HOH . G 4 HOH A 10 510 21 HOH HOH . G 4 HOH A 11 511 47 HOH HOH . G 4 HOH A 12 512 2 HOH HOH . G 4 HOH A 13 513 1 HOH HOH . G 4 HOH A 14 514 19 HOH HOH . G 4 HOH A 15 515 17 HOH HOH . G 4 HOH A 16 516 44 HOH HOH . G 4 HOH A 17 517 10 HOH HOH . G 4 HOH A 18 518 25 HOH HOH . G 4 HOH A 19 519 43 HOH HOH . G 4 HOH A 20 520 9 HOH HOH . G 4 HOH A 21 521 7 HOH HOH . G 4 HOH A 22 522 13 HOH HOH . G 4 HOH A 23 523 23 HOH HOH . G 4 HOH A 24 524 12 HOH HOH . G 4 HOH A 25 525 20 HOH HOH . G 4 HOH A 26 526 11 HOH HOH . G 4 HOH A 27 527 4 HOH HOH . G 4 HOH A 28 528 14 HOH HOH . G 4 HOH A 29 529 8 HOH HOH . G 4 HOH A 30 530 35 HOH HOH . G 4 HOH A 31 531 26 HOH HOH . G 4 HOH A 32 532 22 HOH HOH . G 4 HOH A 33 533 30 HOH HOH . G 4 HOH A 34 534 49 HOH HOH . G 4 HOH A 35 535 41 HOH HOH . G 4 HOH A 36 536 28 HOH HOH . G 4 HOH A 37 537 48 HOH HOH . G 4 HOH A 38 538 37 HOH HOH . G 4 HOH A 39 539 33 HOH HOH . G 4 HOH A 40 540 18 HOH HOH . G 4 HOH A 41 541 39 HOH HOH . G 4 HOH A 42 542 42 HOH HOH . G 4 HOH A 43 543 40 HOH HOH . G 4 HOH A 44 544 27 HOH HOH . G 4 HOH A 45 545 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 RH6 . . . F 3 10.589 -4.102 15.633 1 49.37 ? C13 RH6 405 A 1 HETATM 2 C C15 RH6 . . . F 3 12.575 -5.126 14.571 1 51.23 ? C15 RH6 405 A 1 HETATM 3 C C20 RH6 . . . F 3 10.08 -1.829 16.204 1 49.45 ? C20 RH6 405 A 1 HETATM 4 C C21 RH6 . . . F 3 9.907 -0.484 15.887 1 50.92 ? C21 RH6 405 A 1 HETATM 5 C C01 RH6 . . . F 3 9.527 0.441 16.851 1 49.29 ? C01 RH6 405 A 1 HETATM 6 C C02 RH6 . . . F 3 9.295 0.075 18.197 1 48.96 ? C02 RH6 405 A 1 HETATM 7 C C04 RH6 . . . F 3 8.686 2.453 18.843 1 53.7 ? C04 RH6 405 A 1 HETATM 8 C C05 RH6 . . . F 3 7.223 2.858 19.036 1 59.18 ? C05 RH6 405 A 1 HETATM 9 C C06 RH6 . . . F 3 8.701 0.658 20.598 1 52.88 ? C06 RH6 405 A 1 HETATM 10 C C07 RH6 . . . F 3 9.076 1.795 21.55 1 49.18 ? C07 RH6 405 A 1 HETATM 11 C C08 RH6 . . . F 3 9.479 -1.298 18.51 1 49.98 ? C08 RH6 405 A 1 HETATM 12 C C09 RH6 . . . F 3 9.864 -2.232 17.532 1 54.63 ? C09 RH6 405 A 1 HETATM 13 C C11 RH6 . . . F 3 10.348 -4.442 16.966 1 49.1 ? C11 RH6 405 A 1 HETATM 14 C C14 RH6 . . . F 3 11.134 -4.742 14.355 1 52.06 ? C14 RH6 405 A 1 HETATM 15 C C16 RH6 . . . F 3 13.491 -4.235 14.542 1 51.26 ? C16 RH6 405 A 1 HETATM 16 C C19 RH6 . . . F 3 10.466 -2.792 15.269 1 49.26 ? C19 RH6 405 A 1 HETATM 17 N N03 RH6 . . . F 3 8.899 1.047 19.198 1 52.8 ? N03 RH6 405 A 1 HETATM 18 O O10 RH6 . . . F 3 10.026 -3.51 17.86 1 58.33 ? O10 RH6 405 A 1 HETATM 19 O O12 RH6 . . . F 3 10.5 -5.589 17.344 1 53.8 ? O12 RH6 405 A 1 HETATM 20 H H1 RH6 . . . F 3 12.672 -6.135 14.786 1 61.48 ? H1 RH6 405 A 1 HETATM 21 H H2 RH6 . . . F 3 10.048 -0.199 15.012 1 61.1 ? H2 RH6 405 A 1 HETATM 22 H H3 RH6 . . . F 3 9.419 1.329 16.603 1 59.14 ? H3 RH6 405 A 1 HETATM 23 H H4 RH6 . . . F 3 9.229 2.995 19.385 1 64.44 ? H4 RH6 405 A 1 HETATM 24 H H5 RH6 . . . F 3 8.922 2.582 17.943 1 64.44 ? H5 RH6 405 A 1 HETATM 25 H H6 RH6 . . . F 3 6.848 3.087 18.207 1 71.01 ? H6 RH6 405 A 1 HETATM 26 H H7 RH6 . . . F 3 6.744 2.141 19.411 1 71.01 ? H7 RH6 405 A 1 HETATM 27 H H8 RH6 . . . F 3 7.178 3.6 19.613 1 71.01 ? H8 RH6 405 A 1 HETATM 28 H H9 RH6 . . . F 3 9.24 -0.089 20.786 1 63.45 ? H9 RH6 405 A 1 HETATM 29 H H10 RH6 . . . F 3 7.802 0.428 20.73 1 63.45 ? H10 RH6 405 A 1 HETATM 30 H H11 RH6 . . . F 3 9.482 2.49 21.064 1 59.01 ? H11 RH6 405 A 1 HETATM 31 H H12 RH6 . . . F 3 8.302 2.119 21.97 1 59.01 ? H12 RH6 405 A 1 HETATM 32 H H13 RH6 . . . F 3 9.676 1.476 22.199 1 59.01 ? H13 RH6 405 A 1 HETATM 33 H H14 RH6 . . . F 3 9.339 -1.587 19.381 1 59.98 ? H14 RH6 405 A 1 HETATM 34 H H15 RH6 . . . F 3 10.592 -5.478 14.139 1 62.48 ? H15 RH6 405 A 1 HETATM 35 H H17 RH6 . . . F 3 13.541 -3.454 13.965 1 61.52 ? H17 RH6 405 A 1 HETATM 36 H H19 RH6 . . . F 3 10.468 -2.588 14.362 1 59.11 ? H19 RH6 405 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #