data_8D6N # _model_server_result.job_id sakqzPUTw6ugb2UCYPRrQw _model_server_result.datetime_utc '2024-11-15 14:22:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8d6n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 8D6N # _exptl.entry_id 8D6N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 257.328 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E)-3-[7-(diethylamino)-2-oxo-2H-1-benzopyran-3-yl]prop-2-enal,bound form' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.108 _cell.angle_gamma 90 _cell.entry_id 8D6N _cell.length_a 29.612 _cell.length_b 67.106 _cell.length_c 63.903 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8D6N _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 108 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 108 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C16 _struct_conn.ptnr2_label_comp_id RH6 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RH6 _struct_conn.ptnr2_auth_seq_id 202 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.241 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H19 N O2' _chem_comp.formula_weight 257.328 _chem_comp.id RH6 _chem_comp.mon_nstd_flag . _chem_comp.name '(2E)-3-[7-(diethylamino)-2-oxo-2H-1-benzopyran-3-yl]prop-2-enal, bound form' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C15 RH6 sing 289 n n C15 C14 RH6 doub 290 e n C14 C13 RH6 sing 291 n n C19 C13 RH6 doub 292 n n C19 C20 RH6 sing 293 n n C13 C11 RH6 sing 294 n n O12 C11 RH6 doub 295 n n C20 C21 RH6 doub 296 n y C20 C09 RH6 sing 297 n y C21 C01 RH6 sing 298 n y C11 O10 RH6 sing 299 n n O10 C09 RH6 sing 300 n n C09 C08 RH6 doub 301 n y C01 C02 RH6 doub 302 n y C08 C02 RH6 sing 303 n y C02 N03 RH6 sing 304 n n N03 C04 RH6 sing 305 n n N03 C06 RH6 sing 306 n n C04 C05 RH6 sing 307 n n C07 C06 RH6 sing 308 n n C15 H1 RH6 sing 309 n n C21 H2 RH6 sing 310 n n C01 H3 RH6 sing 311 n n C04 H4 RH6 sing 312 n n C04 H5 RH6 sing 313 n n C05 H6 RH6 sing 314 n n C05 H7 RH6 sing 315 n n C05 H8 RH6 sing 316 n n C06 H9 RH6 sing 317 n n C06 H10 RH6 sing 318 n n C07 H11 RH6 sing 319 n n C07 H12 RH6 sing 320 n n C07 H13 RH6 sing 321 n n C08 H14 RH6 sing 322 n n C14 H15 RH6 sing 323 n n C16 H16 RH6 sing 324 n n C16 H17 RH6 sing 325 n n C16 H18 RH6 sing 326 n n C19 H19 RH6 sing 327 n n # _atom_sites.entry_id 8D6N _atom_sites.fract_transf_matrix[1][1] 0.03377 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000064 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014902 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015649 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 201 201 ACT ACT . C 3 RH6 A 1 202 301 RH6 LIG . D 4 GOL A 1 203 401 GOL GOL . E 2 ACT A 1 204 501 ACT ACT . F 4 GOL A 1 205 601 GOL GOL . G 2 ACT A 1 206 701 ACT ACT . H 4 GOL A 1 207 801 GOL GOL . I 4 GOL A 1 208 901 GOL GOL . J 4 GOL A 1 209 1001 GOL GOL . K 4 GOL A 1 210 1101 GOL GOL . L 5 MLA A 1 211 1201 MLA MAL . M 5 MLA A 1 212 1301 MLA MAL . N 4 GOL A 1 213 1401 GOL GOL . O 6 HOH A 1 301 48 HOH HOH . O 6 HOH A 2 302 15 HOH HOH . O 6 HOH A 3 303 40 HOH HOH . O 6 HOH A 4 304 29 HOH HOH . O 6 HOH A 5 305 42 HOH HOH . O 6 HOH A 6 306 8 HOH HOH . O 6 HOH A 7 307 22 HOH HOH . O 6 HOH A 8 308 20 HOH HOH . O 6 HOH A 9 309 39 HOH HOH . O 6 HOH A 10 310 25 HOH HOH . O 6 HOH A 11 311 49 HOH HOH . O 6 HOH A 12 312 27 HOH HOH . O 6 HOH A 13 313 11 HOH HOH . O 6 HOH A 14 314 19 HOH HOH . O 6 HOH A 15 315 36 HOH HOH . O 6 HOH A 16 316 4 HOH HOH . O 6 HOH A 17 317 28 HOH HOH . O 6 HOH A 18 318 10 HOH HOH . O 6 HOH A 19 319 7 HOH HOH . O 6 HOH A 20 320 24 HOH HOH . O 6 HOH A 21 321 2 HOH HOH . O 6 HOH A 22 322 26 HOH HOH . O 6 HOH A 23 323 12 HOH HOH . O 6 HOH A 24 324 30 HOH HOH . O 6 HOH A 25 325 3 HOH HOH . O 6 HOH A 26 326 21 HOH HOH . O 6 HOH A 27 327 41 HOH HOH . O 6 HOH A 28 328 1 HOH HOH . O 6 HOH A 29 329 6 HOH HOH . O 6 HOH A 30 330 31 HOH HOH . O 6 HOH A 31 331 32 HOH HOH . O 6 HOH A 32 332 14 HOH HOH . O 6 HOH A 33 333 13 HOH HOH . O 6 HOH A 34 334 35 HOH HOH . O 6 HOH A 35 335 23 HOH HOH . O 6 HOH A 36 336 38 HOH HOH . O 6 HOH A 37 337 9 HOH HOH . O 6 HOH A 38 338 5 HOH HOH . O 6 HOH A 39 339 16 HOH HOH . O 6 HOH A 40 340 37 HOH HOH . O 6 HOH A 41 341 46 HOH HOH . O 6 HOH A 42 342 47 HOH HOH . O 6 HOH A 43 343 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 RH6 . . . C 3 10.675 -0.084 18.174 1 18.12 ? C13 RH6 202 A 1 HETATM 2 C C15 RH6 . . . C 3 12.162 -1.313 16.519 1 18.14 ? C15 RH6 202 A 1 HETATM 3 C C20 RH6 . . . C 3 9.014 1.173 19.412 1 15.93 ? C20 RH6 202 A 1 HETATM 4 C C21 RH6 . . . C 3 8.052 2.178 19.535 1 20.58 ? C21 RH6 202 A 1 HETATM 5 C C01 RH6 . . . C 3 7.268 2.31 20.679 1 24.31 ? C01 RH6 202 A 1 HETATM 6 C C02 RH6 . . . C 3 7.396 1.437 21.785 1 19.15 ? C02 RH6 202 A 1 HETATM 7 C C04 RH6 . . . C 3 5.466 2.501 23.05 1 28.18 ? C04 RH6 202 A 1 HETATM 8 C C05 RH6 . . . C 3 5.903 3.848 23.63 1 35.69 ? C05 RH6 202 A 1 HETATM 9 C C06 RH6 . . . C 3 6.868 0.748 24.169 1 24.15 ? C06 RH6 202 A 1 HETATM 10 C C07 RH6 . . . C 3 6.331 -0.675 24.006 1 22.96 ? C07 RH6 202 A 1 HETATM 11 C C08 RH6 . . . C 3 8.38 0.43 21.626 1 19.05 ? C08 RH6 202 A 1 HETATM 12 C C09 RH6 . . . C 3 9.179 0.281 20.483 1 19.17 ? C09 RH6 202 A 1 HETATM 13 C C11 RH6 . . . C 3 10.804 -0.921 19.315 1 17.91 ? C11 RH6 202 A 1 HETATM 14 C C14 RH6 . . . C 3 11.354 -0.29 16.855 1 18.97 ? C14 RH6 202 A 1 HETATM 15 C C16 RH6 . . . C 3 12.763 -1.383 15.174 1 16.31 ? C16 RH6 202 A 1 HETATM 16 C C19 RH6 . . . C 3 9.811 1.02 18.278 1 19.01 ? C19 RH6 202 A 1 HETATM 17 N N03 RH6 . . . C 3 6.588 1.561 22.983 1 22.42 ? N03 RH6 202 A 1 HETATM 18 O O10 RH6 . . . C 3 10.082 -0.689 20.408 1 19.14 ? O10 RH6 202 A 1 HETATM 19 O O12 RH6 . . . C 3 11.571 -1.864 19.327 1 20.16 ? O12 RH6 202 A 1 HETATM 20 H H1 RH6 . . . C 3 12.343 -1.98 17.14 1 21.77 ? H1 RH6 202 A 1 HETATM 21 H H2 RH6 . . . C 3 7.932 2.775 18.834 1 24.7 ? H2 RH6 202 A 1 HETATM 22 H H3 RH6 . . . C 3 6.64 2.994 20.717 1 29.17 ? H3 RH6 202 A 1 HETATM 23 H H4 RH6 . . . C 3 5.125 2.635 22.185 1 33.82 ? H4 RH6 202 A 1 HETATM 24 H H5 RH6 . . . C 3 4.792 2.137 23.593 1 33.82 ? H5 RH6 202 A 1 HETATM 25 H H6 RH6 . . . C 3 6.839 3.874 23.689 1 42.83 ? H6 RH6 202 A 1 HETATM 26 H H7 RH6 . . . C 3 5.532 3.955 24.486 1 42.83 ? H7 RH6 202 A 1 HETATM 27 H H8 RH6 . . . C 3 5.604 4.541 23.071 1 42.83 ? H8 RH6 202 A 1 HETATM 28 H H9 RH6 . . . C 3 6.462 1.146 24.917 1 28.98 ? H9 RH6 202 A 1 HETATM 29 H H10 RH6 . . . C 3 7.796 0.713 24.305 1 28.98 ? H10 RH6 202 A 1 HETATM 30 H H11 RH6 . . . C 3 5.393 -0.662 24.038 1 27.55 ? H11 RH6 202 A 1 HETATM 31 H H12 RH6 . . . C 3 6.661 -1.215 24.7 1 27.55 ? H12 RH6 202 A 1 HETATM 32 H H13 RH6 . . . C 3 6.611 -1.022 23.18 1 27.55 ? H13 RH6 202 A 1 HETATM 33 H H14 RH6 . . . C 3 8.505 -0.17 22.324 1 22.86 ? H14 RH6 202 A 1 HETATM 34 H H15 RH6 . . . C 3 11.195 0.359 16.209 1 22.76 ? H15 RH6 202 A 1 HETATM 35 H H17 RH6 . . . C 3 12.634 -0.688 14.571 1 19.57 ? H17 RH6 202 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #