data_8D8P
#
_model_server_result.job_id            61yL8mxitZ3RKbvHIXtUpQ 
_model_server_result.datetime_utc      '2025-06-25 15:30:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8d8p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":502}' 
#
_entry.id    8D8P 
#
_exptl.entry_id    8D8P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              256.424 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PALMITIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8D8P 
_cell.length_a            57.545 
_cell.length_b            203.38 
_cell.length_c            316.351 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8D8P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        22 
_symmetry.space_group_name_Hall    'F 2 2' 
_symmetry.space_group_name_H-M     'F 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 378 A CYS 378 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc2 B SG CYS 378 B CYS 378 1_555 K FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
#
_chem_comp.formula           'C16 H32 O2' 
_chem_comp.formula_weight    256.424 
_chem_comp.id                PLM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PALMITIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PLM sing 342 n n 
C1 O2 PLM doub 343 n n 
C1 C2 PLM sing 344 n n 
O1 H PLM sing 345 n n 
C2 C3 PLM sing 346 n n 
C2 H21 PLM sing 347 n n 
C2 H22 PLM sing 348 n n 
C3 C4 PLM sing 349 n n 
C3 H31 PLM sing 350 n n 
C3 H32 PLM sing 351 n n 
C4 C5 PLM sing 352 n n 
C4 H41 PLM sing 353 n n 
C4 H42 PLM sing 354 n n 
C5 C6 PLM sing 355 n n 
C5 H51 PLM sing 356 n n 
C5 H52 PLM sing 357 n n 
C6 C7 PLM sing 358 n n 
C6 H61 PLM sing 359 n n 
C6 H62 PLM sing 360 n n 
C7 C8 PLM sing 361 n n 
C7 H71 PLM sing 362 n n 
C7 H72 PLM sing 363 n n 
C8 C9 PLM sing 364 n n 
C8 H81 PLM sing 365 n n 
C8 H82 PLM sing 366 n n 
C9 CA PLM sing 367 n n 
C9 H91 PLM sing 368 n n 
C9 H92 PLM sing 369 n n 
CA CB PLM sing 370 n n 
CA HA1 PLM sing 371 n n 
CA HA2 PLM sing 372 n n 
CB CC PLM sing 373 n n 
CB HB1 PLM sing 374 n n 
CB HB2 PLM sing 375 n n 
CC CD PLM sing 376 n n 
CC HC1 PLM sing 377 n n 
CC HC2 PLM sing 378 n n 
CD CE PLM sing 379 n n 
CD HD1 PLM sing 380 n n 
CD HD2 PLM sing 381 n n 
CE CF PLM sing 382 n n 
CE HE1 PLM sing 383 n n 
CE HE2 PLM sing 384 n n 
CF CG PLM sing 385 n n 
CF HF1 PLM sing 386 n n 
CF HF2 PLM sing 387 n n 
CG HG1 PLM sing 388 n n 
CG HG2 PLM sing 389 n n 
CG HG3 PLM sing 390 n n 
#
_atom_sites.entry_id                     8D8P 
_atom_sites.fract_transf_matrix[1][1]    0.017378 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004917 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003161 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 501 501 HEM HEM . 
D 3 PLM A 1 502 601 PLM PLM . 
E 4 SO4 A 1 503 3 SO4 SO4 . 
F 4 SO4 A 1 504 4 SO4 SO4 . 
G 4 SO4 A 1 505 5 SO4 SO4 . 
H 4 SO4 A 1 506 7 SO4 SO4 . 
I 4 SO4 A 1 507 11 SO4 SO4 . 
J 4 SO4 A 1 508 12 SO4 SO4 . 
K 2 HEM B 1 501 501 HEM HEM . 
L 3 PLM B 1 502 601 PLM PLM . 
M 4 SO4 B 1 503 1 SO4 SO4 . 
N 4 SO4 B 1 504 2 SO4 SO4 . 
O 4 SO4 B 1 505 6 SO4 SO4 . 
P 4 SO4 B 1 506 9 SO4 SO4 . 
Q 4 SO4 B 1 507 13 SO4 SO4 . 
R 4 SO4 B 1 508 14 SO4 SO4 . 
S 5 HOH A 1 601 7 HOH HOH . 
S 5 HOH A 2 602 16 HOH HOH . 
S 5 HOH A 3 603 9 HOH HOH . 
S 5 HOH A 4 604 15 HOH HOH . 
S 5 HOH A 5 605 27 HOH HOH . 
S 5 HOH A 6 606 17 HOH HOH . 
S 5 HOH A 7 607 10 HOH HOH . 
S 5 HOH A 8 608 11 HOH HOH . 
S 5 HOH A 9 609 12 HOH HOH . 
S 5 HOH A 10 610 31 HOH HOH . 
S 5 HOH A 11 611 4 HOH HOH . 
S 5 HOH A 12 612 13 HOH HOH . 
S 5 HOH A 13 613 32 HOH HOH . 
S 5 HOH A 14 614 30 HOH HOH . 
S 5 HOH A 15 615 14 HOH HOH . 
S 5 HOH A 16 616 28 HOH HOH . 
S 5 HOH A 17 617 8 HOH HOH . 
T 5 HOH B 1 601 25 HOH HOH . 
T 5 HOH B 2 602 29 HOH HOH . 
T 5 HOH B 3 603 1 HOH HOH . 
T 5 HOH B 4 604 5 HOH HOH . 
T 5 HOH B 5 605 23 HOH HOH . 
T 5 HOH B 6 606 34 HOH HOH . 
T 5 HOH B 7 607 19 HOH HOH . 
T 5 HOH B 8 608 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PLM . . . L 3 16.6 -34.584 -56.151 1 65.83 ? C1 PLM 502 B 1 
HETATM 2 O O1 PLM . . . L 3 17.762 -34.871 -56.546 1 67.45 ? O1 PLM 502 B 1 
HETATM 3 O O2 PLM . . . L 3 15.869 -35.201 -55.331 1 66.61 ? O2 PLM 502 B 1 
HETATM 4 C C2 PLM . . . L 3 15.998 -33.29 -56.791 1 68.62 ? C2 PLM 502 B 1 
HETATM 5 C C3 PLM . . . L 3 15.363 -33.504 -58.154 1 69.36 ? C3 PLM 502 B 1 
HETATM 6 C C4 PLM . . . L 3 14.145 -34.429 -58.11 1 65.46 ? C4 PLM 502 B 1 
HETATM 7 C C5 PLM . . . L 3 13.747 -34.972 -59.477 1 60.81 ? C5 PLM 502 B 1 
HETATM 8 C C6 PLM . . . L 3 12.502 -35.861 -59.459 1 61.08 ? C6 PLM 502 B 1 
HETATM 9 C C7 PLM . . . L 3 12.036 -36.261 -60.86 1 68.12 ? C7 PLM 502 B 1 
HETATM 10 C C8 PLM . . . L 3 10.566 -36.671 -60.952 1 68.7 ? C8 PLM 502 B 1 
HETATM 11 C C9 PLM . . . L 3 10.319 -37.804 -61.96 1 66.46 ? C9 PLM 502 B 1 
HETATM 12 C CA PLM . . . L 3 9.277 -38.82 -61.499 1 63.67 ? CA PLM 502 B 1 
HETATM 13 C CB PLM . . . L 3 8.04 -38.871 -62.403 1 64.58 ? CB PLM 502 B 1 
HETATM 14 C CC PLM . . . L 3 6.729 -38.619 -61.651 1 69.69 ? CC PLM 502 B 1 
HETATM 15 C CD PLM . . . L 3 5.755 -39.801 -61.637 1 66.85 ? CD PLM 502 B 1 
HETATM 16 C CE PLM . . . L 3 5.97 -40.813 -62.766 1 64.05 ? CE PLM 502 B 1 
HETATM 17 C CF PLM . . . L 3 5.575 -42.242 -62.374 1 63.29 ? CF PLM 502 B 1 
HETATM 18 C CG PLM . . . L 3 5.186 -43.12 -63.57 1 58.31 ? CG PLM 502 B 1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           434 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           18 
#