data_8DAF # _model_server_result.job_id K1ba55uSyvJoUIDCYleBRg _model_server_result.datetime_utc '2024-10-17 05:40:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8daf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 8DAF # _exptl.entry_id 8DAF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 550.752 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '10-[(3aR,6S,6aR)-3-phenyl-3a-(1-phenylethenyl)-6-(sulfamoylamino)-1,3a,4,5,6,6a-hexahydropentalen-2-yl]decanoic acid (non-preferred name)' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8DAF _cell.length_a 73.428 _cell.length_b 73.428 _cell.length_c 194.184 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DAF _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I 1 1 B,D,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # _chem_comp.formula 'C32 H42 N2 O4 S' _chem_comp.formula_weight 550.752 _chem_comp.id IUW _chem_comp.mon_nstd_flag . _chem_comp.name '10-[(3aR,6S,6aR)-3-phenyl-3a-(1-phenylethenyl)-6-(sulfamoylamino)-1,3a,4,5,6,6a-hexahydropentalen-2-yl]decanoic acid (non-preferred name)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C30 C31 IUW doub 173 n y C30 C29 IUW sing 174 n y C31 C26 IUW sing 175 n y O37 S34 IUW doub 176 n n C38 C39 IUW sing 177 n n C38 C32 IUW sing 178 n n C29 C28 IUW doub 179 n y N33 S34 IUW sing 180 n n N33 C32 IUW sing 181 n n C13 C12 IUW sing 182 n n C13 C14 IUW sing 183 n n S34 O35 IUW doub 184 n n S34 N36 IUW sing 185 n n C39 C09 IUW sing 186 n n C26 C25 IUW sing 187 n n C26 C27 IUW doub 188 n y C12 C25 IUW doub 189 n n C12 C11 IUW sing 190 n n C32 C10 IUW sing 191 n n C25 C09 IUW sing 192 n n C14 C15 IUW sing 193 n n C28 C27 IUW sing 194 n y C11 C10 IUW sing 195 n n C09 C10 IUW sing 196 n n C09 C02 IUW sing 197 n n C15 C16 IUW sing 198 n n C02 C01 IUW doub 199 n n C02 C03 IUW sing 200 n n C16 C17 IUW sing 201 n n C17 C18 IUW sing 202 n n C03 C08 IUW doub 203 n y C03 C04 IUW sing 204 n y C08 C07 IUW sing 205 n y C04 C05 IUW doub 206 n y C18 C19 IUW sing 207 n n C07 C06 IUW doub 208 n y C05 C06 IUW sing 209 n y C19 C20 IUW sing 210 n n C20 C21 IUW sing 211 n n O23 C22 IUW doub 212 n n C21 C22 IUW sing 213 n n C22 O24 IUW sing 214 n n C10 H101 IUW sing 215 n n C13 H132 IUW sing 216 n n C13 H131 IUW sing 217 n n C15 H152 IUW sing 218 n n C15 H151 IUW sing 219 n n C17 H171 IUW sing 220 n n C17 H172 IUW sing 221 n n C20 H202 IUW sing 222 n n C20 H201 IUW sing 223 n n C21 H212 IUW sing 224 n n C21 H211 IUW sing 225 n n C28 H281 IUW sing 226 n n C01 H012 IUW sing 227 n n C01 H011 IUW sing 228 n n C04 H041 IUW sing 229 n n C05 H051 IUW sing 230 n n C06 H061 IUW sing 231 n n C07 H071 IUW sing 232 n n C08 H081 IUW sing 233 n n C11 H112 IUW sing 234 n n C11 H111 IUW sing 235 n n C14 H141 IUW sing 236 n n C14 H142 IUW sing 237 n n C16 H162 IUW sing 238 n n C16 H161 IUW sing 239 n n C18 H182 IUW sing 240 n n C18 H181 IUW sing 241 n n C19 H191 IUW sing 242 n n C19 H192 IUW sing 243 n n C27 H271 IUW sing 244 n n C29 H291 IUW sing 245 n n C30 H301 IUW sing 246 n n C31 H311 IUW sing 247 n n C32 H321 IUW sing 248 n n C38 H381 IUW sing 249 n n C38 H382 IUW sing 250 n n C39 H391 IUW sing 251 n n C39 H392 IUW sing 252 n n N33 H331 IUW sing 253 n n N36 H362 IUW sing 254 n n N36 H361 IUW sing 255 n n O24 H3 IUW sing 256 n n # _atom_sites.entry_id 8DAF _atom_sites.fract_transf_matrix[1][1] 0.013619 _atom_sites.fract_transf_matrix[1][2] 0.007863 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00515 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 IUW A 1 501 462 IUW IUW . F 4 PEF A 1 502 463 PEF PEF . G 3 IUW B 1 501 460 IUW IUW . H 4 PEF B 1 502 461 PEF PEF . I 5 HOH A 1 601 9 HOH HOH . I 5 HOH A 2 602 6 HOH HOH . I 5 HOH A 3 603 12 HOH HOH . I 5 HOH A 4 604 1 HOH HOH . I 5 HOH A 5 605 11 HOH HOH . I 5 HOH A 6 606 13 HOH HOH . I 5 HOH A 7 607 7 HOH HOH . I 5 HOH A 8 608 4 HOH HOH . I 5 HOH A 9 609 10 HOH HOH . I 5 HOH A 10 610 8 HOH HOH . J 5 HOH B 1 601 2 HOH HOH . J 5 HOH B 2 602 5 HOH HOH . J 5 HOH B 3 603 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 IUW . A . E 3 2.103 -10.238 -14.625 0.45 78.31 ? C10 IUW 501 A 1 HETATM 2 C C13 IUW . A . E 3 4.966 -8.768 -16.544 0.45 77.98 ? C13 IUW 501 A 1 HETATM 3 C C15 IUW . A . E 3 6.592 -6.965 -15.886 0.45 76.84 ? C15 IUW 501 A 1 HETATM 4 C C17 IUW . A . E 3 8.657 -5.78 -15.144 0.45 74.01 ? C17 IUW 501 A 1 HETATM 5 C C20 IUW . A . E 3 11.048 -5.961 -12.357 0.45 73.73 ? C20 IUW 501 A 1 HETATM 6 C C21 IUW . A . E 3 12.062 -7.045 -12.246 0.45 74.19 ? C21 IUW 501 A 1 HETATM 7 C C22 IUW . A . E 3 11.683 -8.116 -11.172 0.45 71.53 ? C22 IUW 501 A 1 HETATM 8 C C26 IUW . A . E 3 4.368 -11.805 -17.186 0.45 76.85 ? C26 IUW 501 A 1 HETATM 9 C C28 IUW . A . E 3 4.538 -12.347 -19.53 0.45 71.41 ? C28 IUW 501 A 1 HETATM 10 C C01 IUW . A . E 3 3.982 -13.524 -14.086 0.45 75.43 ? C01 IUW 501 A 1 HETATM 11 C C02 IUW . A . E 3 3.664 -12.269 -13.903 0.45 79.27 ? C02 IUW 501 A 1 HETATM 12 C C03 IUW . A . E 3 4.08 -11.689 -12.592 0.45 75.32 ? C03 IUW 501 A 1 HETATM 13 C C04 IUW . A . E 3 4.64 -10.42 -12.454 0.45 75.11 ? C04 IUW 501 A 1 HETATM 14 C C05 IUW . A . E 3 5.026 -9.926 -11.227 0.45 72.87 ? C05 IUW 501 A 1 HETATM 15 C C06 IUW . A . E 3 4.887 -10.671 -10.093 0.45 75.05 ? C06 IUW 501 A 1 HETATM 16 C C07 IUW . A . E 3 4.355 -11.922 -10.202 0.45 70.94 ? C07 IUW 501 A 1 HETATM 17 C C08 IUW . A . E 3 3.967 -12.416 -11.419 0.45 72.29 ? C08 IUW 501 A 1 HETATM 18 C C09 IUW . A . E 3 2.913 -11.52 -15.029 0.45 78.39 ? C09 IUW 501 A 1 HETATM 19 C C11 IUW . A . E 3 2.915 -9.072 -15.175 0.45 78.92 ? C11 IUW 501 A 1 HETATM 20 C C12 IUW . A . E 3 4.072 -9.7 -15.853 0.45 78.71 ? C12 IUW 501 A 1 HETATM 21 C C14 IUW . A . E 3 5.594 -7.92 -15.397 0.45 80.8 ? C14 IUW 501 A 1 HETATM 22 C C16 IUW . A . E 3 7.284 -6.294 -14.726 0.45 74.32 ? C16 IUW 501 A 1 HETATM 23 C C18 IUW . A . E 3 9.34 -5.103 -14.003 0.45 70.91 ? C18 IUW 501 A 1 HETATM 24 C C19 IUW . A . E 3 10.749 -5.605 -13.822 0.45 74.54 ? C19 IUW 501 A 1 HETATM 25 C C25 IUW . A . E 3 3.858 -10.998 -16.084 0.45 75.91 ? C25 IUW 501 A 1 HETATM 26 C C27 IUW . A . E 3 4.045 -11.558 -18.514 0.45 77.02 ? C27 IUW 501 A 1 HETATM 27 C C29 IUW . A . E 3 5.359 -13.409 -19.269 0.45 71.6 ? C29 IUW 501 A 1 HETATM 28 C C30 IUW . A . E 3 5.683 -13.67 -17.966 0.45 74.39 ? C30 IUW 501 A 1 HETATM 29 C C31 IUW . A . E 3 5.2 -12.891 -16.951 0.45 74.36 ? C31 IUW 501 A 1 HETATM 30 C C32 IUW . A . E 3 0.709 -10.351 -15.317 0.45 75.67 ? C32 IUW 501 A 1 HETATM 31 C C38 IUW . A . E 3 0.936 -11.41 -16.395 0.45 71.95 ? C38 IUW 501 A 1 HETATM 32 C C39 IUW . A . E 3 1.836 -12.372 -15.705 0.45 74.4 ? C39 IUW 501 A 1 HETATM 33 N N33 IUW . A . E 3 0.071 -9.142 -15.856 0.45 75.83 ? N33 IUW 501 A 1 HETATM 34 N N36 IUW . A . E 3 0.259 -7.801 -13.76 0.45 76.04 ? N36 IUW 501 A 1 HETATM 35 O O23 IUW . A . E 3 12.53 -9.017 -10.926 0.45 71.51 ? O23 IUW 501 A 1 HETATM 36 O O24 IUW . A . E 3 10.568 -8.001 -10.622 0.45 70.28 ? O24 IUW 501 A 1 HETATM 37 O O35 IUW . A . E 3 -1.933 -8.452 -14.621 0.45 71.48 ? O35 IUW 501 A 1 HETATM 38 O O37 IUW . A . E 3 -0.572 -6.718 -15.778 0.45 64.08 ? O37 IUW 501 A 1 HETATM 39 S S34 IUW . A . E 3 -0.679 -7.94 -15.048 0.45 86.27 ? S34 IUW 501 A 1 HETATM 40 H H101 IUW . A . E 3 1.991 -10.185 -13.663 0.45 94.56 ? H101 IUW 501 A 1 HETATM 41 H H132 IUW . A . E 3 4.492 -8.216 -17.186 0.45 94.16 ? H132 IUW 501 A 1 HETATM 42 H H131 IUW . A . E 3 5.641 -9.229 -17.067 0.45 94.16 ? H131 IUW 501 A 1 HETATM 43 H H152 IUW . A . E 3 6.172 -6.313 -16.469 0.45 92.8 ? H152 IUW 501 A 1 HETATM 44 H H151 IUW . A . E 3 7.228 -7.414 -16.464 0.45 92.8 ? H151 IUW 501 A 1 HETATM 45 H H171 IUW . A . E 3 8.566 -5.201 -15.917 0.45 89.4 ? H171 IUW 501 A 1 HETATM 46 H H172 IUW . A . E 3 9.181 -6.511 -15.507 0.45 89.4 ? H172 IUW 501 A 1 HETATM 47 H H202 IUW . A . E 3 10.233 -6.217 -11.897 0.45 89.07 ? H202 IUW 501 A 1 HETATM 48 H H201 IUW . A . E 3 11.343 -5.176 -11.87 0.45 89.07 ? H201 IUW 501 A 1 HETATM 49 H H212 IUW . A . E 3 12.184 -7.449 -13.12 0.45 89.62 ? H212 IUW 501 A 1 HETATM 50 H H211 IUW . A . E 3 12.926 -6.646 -12.056 0.45 89.62 ? H211 IUW 501 A 1 HETATM 51 H H281 IUW . A . E 3 4.316 -12.166 -20.415 0.45 86.29 ? H281 IUW 501 A 1 HETATM 52 H H012 IUW . A . E 3 3.796 -14.021 -14.847 0.45 91.11 ? H012 IUW 501 A 1 HETATM 53 H H011 IUW . A . E 3 4.434 -14.07 -13.485 0.45 91.11 ? H011 IUW 501 A 1 HETATM 54 H H041 IUW . A . E 3 4.77 -9.867 -13.191 0.45 90.73 ? H041 IUW 501 A 1 HETATM 55 H H051 IUW . A . E 3 5.389 -9.072 -11.158 0.45 88.04 ? H051 IUW 501 A 1 HETATM 56 H H061 IUW . A . E 3 5.147 -10.338 -9.264 0.45 90.65 ? H061 IUW 501 A 1 HETATM 57 H H071 IUW . A . E 3 4.258 -12.439 -9.435 0.45 85.72 ? H071 IUW 501 A 1 HETATM 58 H H081 IUW . A . E 3 3.615 -13.276 -11.444 0.45 87.34 ? H081 IUW 501 A 1 HETATM 59 H H112 IUW . A . E 3 3.208 -8.449 -14.493 0.45 95.3 ? H112 IUW 501 A 1 HETATM 60 H H111 IUW . A . E 3 2.417 -8.51 -15.789 0.45 95.3 ? H111 IUW 501 A 1 HETATM 61 H H141 IUW . A . E 3 5.997 -8.484 -14.719 0.45 97.56 ? H141 IUW 501 A 1 HETATM 62 H H142 IUW . A . E 3 4.914 -7.443 -14.896 0.45 97.56 ? H142 IUW 501 A 1 HETATM 63 H H162 IUW . A . E 3 6.747 -5.571 -14.367 0.45 89.78 ? H162 IUW 501 A 1 HETATM 64 H H161 IUW . A . E 3 7.364 -6.896 -13.969 0.45 89.78 ? H161 IUW 501 A 1 HETATM 65 H H182 IUW . A . E 3 9.334 -4.141 -14.129 0.45 85.68 ? H182 IUW 501 A 1 HETATM 66 H H181 IUW . A . E 3 8.829 -5.22 -13.187 0.45 85.68 ? H181 IUW 501 A 1 HETATM 67 H H191 IUW . A . E 3 11.376 -4.943 -14.152 0.45 90.04 ? H191 IUW 501 A 1 HETATM 68 H H192 IUW . A . E 3 10.901 -6.368 -14.401 0.45 90.04 ? H192 IUW 501 A 1 HETATM 69 H H271 IUW . A . E 3 3.487 -10.85 -18.74 0.45 93.02 ? H271 IUW 501 A 1 HETATM 70 H H291 IUW . A . E 3 5.689 -13.94 -19.958 0.45 86.51 ? H291 IUW 501 A 1 HETATM 71 H H301 IUW . A . E 3 6.24 -14.389 -17.772 0.45 89.86 ? H301 IUW 501 A 1 HETATM 72 H H311 IUW . A . E 3 5.435 -13.092 -16.074 0.45 89.82 ? H311 IUW 501 A 1 HETATM 73 H H321 IUW . A . E 3 0.108 -10.687 -14.633 0.45 91.39 ? H321 IUW 501 A 1 HETATM 74 H H381 IUW . A . E 3 0.105 -11.807 -16.699 0.45 86.93 ? H381 IUW 501 A 1 HETATM 75 H H382 IUW . A . E 3 1.317 -11.033 -17.203 0.45 86.93 ? H382 IUW 501 A 1 HETATM 76 H H391 IUW . A . E 3 1.338 -12.91 -15.071 0.45 89.87 ? H391 IUW 501 A 1 HETATM 77 H H392 IUW . A . E 3 2.209 -13.004 -16.339 0.45 89.87 ? H392 IUW 501 A 1 HETATM 78 H H331 IUW . A . E 3 0.137 -9.128 -16.714 0.45 91.58 ? H331 IUW 501 A 1 HETATM 79 H H362 IUW . A . E 3 0.163 -8.245 -13.036 0.45 91.84 ? H362 IUW 501 A 1 HETATM 80 H H361 IUW . A . E 3 1.059 -7.492 -13.765 0.45 91.84 ? H361 IUW 501 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 80 #