data_8DAI # _model_server_result.job_id 4JCE5ADX6j0qsidOxFRtgw _model_server_result.datetime_utc '2024-11-26 23:10:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dai # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 8DAI # _exptl.entry_id 8DAI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DAI _cell.length_a 34.251 _cell.length_b 45.357 _cell.length_c 98.845 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DAI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 151 A TYR 151 1_555 A N CSD 152 A CSD 152 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A C TYR 151 A TYR 151 1_555 A N CSD 152 A CSD 152 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C TYR 151 A TYR 151 1_555 A N CSD 152 A CSD 152 1_555 ? ? ? ? C ? ? ? ? ? ? ? 1.317 ? covale ? covale4 A C CSD 152 A CSD 152 1_555 A N PHE 153 A PHE 153 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.305 ? covale ? covale5 A C CSD 152 A CSD 152 1_555 A N PHE 153 A PHE 153 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 A C CSD 152 A CSD 152 1_555 A N PHE 153 A PHE 153 1_555 ? C ? ? ? ? ? ? ? ? ? ? 1.322 ? metalc ? metalc1 A NH1 ARG 52 A ARG 52 1_555 E MN MN . A MN 204 1_455 ? A ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc2 A OD2 ASP 70 A ASP 70 1_555 E MN MN . A MN 204 4_466 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc3 A OD1 ASP 87 A ASP 87 1_555 E MN MN . A MN 204 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc4 A O ASP 116 A ASP 116 1_555 D MN MN . A MN 203 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc5 A O ASP 116 A ASP 116 1_555 D MN MN . A MN 203 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc6 A OD1 ASP 127 A ASP 127 1_555 G MN MN . A MN 206 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc7 A ND1 HIS 149 A HIS 149 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc8 A O ARG 159 A ARG 159 1_555 D MN MN . A MN 203 1_655 ? B ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc9 D MN MN . A MN 203 1_555 H O HOH . A HOH 328 3_645 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc10 D MN MN . A MN 203 1_555 H O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc11 D MN MN . A MN 203 1_555 H O HOH . A HOH 422 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.967 ? metalc ? metalc12 E MN MN . A MN 204 1_555 H O HOH . A HOH 371 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.202 ? metalc ? metalc13 E MN MN . A MN 204 1_555 H O HOH . A HOH 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc14 F MN MN . A MN 205 1_555 H O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc15 F MN MN . A MN 205 1_555 H O HOH . A HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc16 F MN MN . A MN 205 1_555 H O HOH . A HOH 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc17 F MN MN . A MN 205 1_555 H O HOH . A HOH 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc18 G MN MN . A MN 206 1_555 H O HOH . A HOH 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc19 G MN MN . A MN 206 1_555 H O HOH . A HOH 435 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.121 ? metalc ? metalc20 G MN MN . A MN 206 1_555 H O HOH . A HOH 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc21 G MN MN . A MN 206 1_555 H O HOH . A HOH 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc22 G MN MN . A MN 206 1_555 H O HOH . A HOH 469 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.418 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8DAI _atom_sites.fract_transf_matrix[1][1] 0.029196 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010117 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 R6F A 1 201 201 R6F TFM . C 3 NAP A 1 202 202 NAP NAP . D 4 MN A 1 203 203 MN MN . E 4 MN A 1 204 205 MN MN . F 4 MN A 1 205 1 MN MN . G 4 MN A 1 206 2 MN MN . H 5 HOH A 1 301 3 HOH HOH . H 5 HOH A 2 302 117 HOH HOH . H 5 HOH A 3 303 131 HOH HOH . H 5 HOH A 4 304 8 HOH HOH . H 5 HOH A 5 305 10 HOH HOH . H 5 HOH A 6 306 111 HOH HOH . H 5 HOH A 7 307 113 HOH HOH . H 5 HOH A 8 308 139 HOH HOH . H 5 HOH A 9 309 2 HOH HOH . H 5 HOH A 10 310 173 HOH HOH . H 5 HOH A 11 311 169 HOH HOH . H 5 HOH A 12 312 1 HOH HOH . H 5 HOH A 13 313 6 HOH HOH . H 5 HOH A 14 314 147 HOH HOH . H 5 HOH A 15 315 5 HOH HOH . H 5 HOH A 16 316 180 HOH HOH . H 5 HOH A 17 317 11 HOH HOH . H 5 HOH A 18 318 171 HOH HOH . H 5 HOH A 19 319 12 HOH HOH . H 5 HOH A 20 320 58 HOH HOH . H 5 HOH A 21 321 67 HOH HOH . H 5 HOH A 22 322 14 HOH HOH . H 5 HOH A 23 323 26 HOH HOH . H 5 HOH A 24 324 48 HOH HOH . H 5 HOH A 25 325 4 HOH HOH . H 5 HOH A 26 326 13 HOH HOH . H 5 HOH A 27 327 19 HOH HOH . H 5 HOH A 28 328 29 HOH HOH . H 5 HOH A 29 329 15 HOH HOH . H 5 HOH A 30 330 166 HOH HOH . H 5 HOH A 31 331 40 HOH HOH . H 5 HOH A 32 332 16 HOH HOH . H 5 HOH A 33 333 21 HOH HOH . H 5 HOH A 34 334 164 HOH HOH . H 5 HOH A 35 335 49 HOH HOH . H 5 HOH A 36 336 47 HOH HOH . H 5 HOH A 37 337 24 HOH HOH . H 5 HOH A 38 338 88 HOH HOH . H 5 HOH A 39 339 54 HOH HOH . H 5 HOH A 40 340 25 HOH HOH . H 5 HOH A 41 341 82 HOH HOH . H 5 HOH A 42 342 45 HOH HOH . H 5 HOH A 43 343 28 HOH HOH . H 5 HOH A 44 344 18 HOH HOH . H 5 HOH A 45 345 50 HOH HOH . H 5 HOH A 46 346 63 HOH HOH . H 5 HOH A 47 347 46 HOH HOH . H 5 HOH A 48 348 27 HOH HOH . H 5 HOH A 49 349 120 HOH HOH . H 5 HOH A 50 350 31 HOH HOH . H 5 HOH A 51 351 80 HOH HOH . H 5 HOH A 52 352 142 HOH HOH . H 5 HOH A 53 353 59 HOH HOH . H 5 HOH A 54 354 33 HOH HOH . H 5 HOH A 55 355 23 HOH HOH . H 5 HOH A 56 356 182 HOH HOH . H 5 HOH A 57 357 39 HOH HOH . H 5 HOH A 58 358 78 HOH HOH . H 5 HOH A 59 359 36 HOH HOH . H 5 HOH A 60 360 44 HOH HOH . H 5 HOH A 61 361 53 HOH HOH . H 5 HOH A 62 362 38 HOH HOH . H 5 HOH A 63 363 116 HOH HOH . H 5 HOH A 64 364 134 HOH HOH . H 5 HOH A 65 365 93 HOH HOH . H 5 HOH A 66 366 20 HOH HOH . H 5 HOH A 67 367 65 HOH HOH . H 5 HOH A 68 368 148 HOH HOH . H 5 HOH A 69 369 154 HOH HOH . H 5 HOH A 70 370 34 HOH HOH . H 5 HOH A 71 371 114 HOH HOH . H 5 HOH A 72 372 163 HOH HOH . H 5 HOH A 73 373 57 HOH HOH . H 5 HOH A 74 374 62 HOH HOH . H 5 HOH A 75 375 90 HOH HOH . H 5 HOH A 76 376 55 HOH HOH . H 5 HOH A 77 377 138 HOH HOH . H 5 HOH A 78 378 170 HOH HOH . H 5 HOH A 79 379 76 HOH HOH . H 5 HOH A 80 380 52 HOH HOH . H 5 HOH A 81 381 41 HOH HOH . H 5 HOH A 82 382 143 HOH HOH . H 5 HOH A 83 383 179 HOH HOH . H 5 HOH A 84 384 159 HOH HOH . H 5 HOH A 85 385 32 HOH HOH . H 5 HOH A 86 386 178 HOH HOH . H 5 HOH A 87 387 84 HOH HOH . H 5 HOH A 88 388 37 HOH HOH . H 5 HOH A 89 389 81 HOH HOH . H 5 HOH A 90 390 133 HOH HOH . H 5 HOH A 91 391 61 HOH HOH . H 5 HOH A 92 392 98 HOH HOH . H 5 HOH A 93 393 177 HOH HOH . H 5 HOH A 94 394 43 HOH HOH . H 5 HOH A 95 395 22 HOH HOH . H 5 HOH A 96 396 77 HOH HOH . H 5 HOH A 97 397 158 HOH HOH . H 5 HOH A 98 398 66 HOH HOH . H 5 HOH A 99 399 128 HOH HOH . H 5 HOH A 100 400 119 HOH HOH . H 5 HOH A 101 401 51 HOH HOH . H 5 HOH A 102 402 107 HOH HOH . H 5 HOH A 103 403 56 HOH HOH . H 5 HOH A 104 404 151 HOH HOH . H 5 HOH A 105 405 86 HOH HOH . H 5 HOH A 106 406 7 HOH HOH . H 5 HOH A 107 407 17 HOH HOH . H 5 HOH A 108 408 110 HOH HOH . H 5 HOH A 109 409 79 HOH HOH . H 5 HOH A 110 410 70 HOH HOH . H 5 HOH A 111 411 71 HOH HOH . H 5 HOH A 112 412 87 HOH HOH . H 5 HOH A 113 413 73 HOH HOH . H 5 HOH A 114 414 112 HOH HOH . H 5 HOH A 115 415 95 HOH HOH . H 5 HOH A 116 416 64 HOH HOH . H 5 HOH A 117 417 129 HOH HOH . H 5 HOH A 118 418 83 HOH HOH . H 5 HOH A 119 419 153 HOH HOH . H 5 HOH A 120 420 35 HOH HOH . H 5 HOH A 121 421 72 HOH HOH . H 5 HOH A 122 422 99 HOH HOH . H 5 HOH A 123 423 130 HOH HOH . H 5 HOH A 124 424 89 HOH HOH . H 5 HOH A 125 425 75 HOH HOH . H 5 HOH A 126 426 127 HOH HOH . H 5 HOH A 127 427 96 HOH HOH . H 5 HOH A 128 428 91 HOH HOH . H 5 HOH A 129 429 168 HOH HOH . H 5 HOH A 130 430 74 HOH HOH . H 5 HOH A 131 431 108 HOH HOH . H 5 HOH A 132 432 92 HOH HOH . H 5 HOH A 133 433 85 HOH HOH . H 5 HOH A 134 434 68 HOH HOH . H 5 HOH A 135 435 102 HOH HOH . H 5 HOH A 136 436 146 HOH HOH . H 5 HOH A 137 437 141 HOH HOH . H 5 HOH A 138 438 144 HOH HOH . H 5 HOH A 139 439 104 HOH HOH . H 5 HOH A 140 440 100 HOH HOH . H 5 HOH A 141 441 94 HOH HOH . H 5 HOH A 142 442 176 HOH HOH . H 5 HOH A 143 443 101 HOH HOH . H 5 HOH A 144 444 97 HOH HOH . H 5 HOH A 145 445 109 HOH HOH . H 5 HOH A 146 446 155 HOH HOH . H 5 HOH A 147 447 69 HOH HOH . H 5 HOH A 148 448 183 HOH HOH . H 5 HOH A 149 449 135 HOH HOH . H 5 HOH A 150 450 124 HOH HOH . H 5 HOH A 151 451 118 HOH HOH . H 5 HOH A 152 452 145 HOH HOH . H 5 HOH A 153 453 152 HOH HOH . H 5 HOH A 154 454 106 HOH HOH . H 5 HOH A 155 455 156 HOH HOH . H 5 HOH A 156 456 160 HOH HOH . H 5 HOH A 157 457 125 HOH HOH . H 5 HOH A 158 458 185 HOH HOH . H 5 HOH A 159 459 103 HOH HOH . H 5 HOH A 160 460 181 HOH HOH . H 5 HOH A 161 461 150 HOH HOH . H 5 HOH A 162 462 9 HOH HOH . H 5 HOH A 163 463 126 HOH HOH . H 5 HOH A 164 464 140 HOH HOH . H 5 HOH A 165 465 105 HOH HOH . H 5 HOH A 166 466 162 HOH HOH . H 5 HOH A 167 467 137 HOH HOH . H 5 HOH A 168 468 132 HOH HOH . H 5 HOH A 169 469 184 HOH HOH . H 5 HOH A 170 470 165 HOH HOH . H 5 HOH A 171 471 175 HOH HOH . H 5 HOH A 172 472 174 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 38.92 _atom_site.Cartn_y 38.637 _atom_site.Cartn_z 34.585 _atom_site.occupancy 0.24 _atom_site.B_iso_or_equiv 40.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 205 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #