data_8DAL # _model_server_result.job_id qVm3aGgTJXwQPe7kifPylA _model_server_result.datetime_utc '2024-11-14 13:36:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dal # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8DAL # _exptl.entry_id 8DAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 215.004 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-bromo-3-hydroxy-4-oxo-1,4-dihydropyridine-2-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8DAL _cell.length_a 75.403 _cell.length_b 75.403 _cell.length_c 120.436 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall 'P 62 2 (x,y,z+1/3)' _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 47 A HIS 41 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc2 A OE1 GLU 74 A GLU 80 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc3 A OD2 ASP 102 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc4 A OD1 ASP 102 A ASP 108 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc5 A OE2 GLU 113 A GLU 119 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc6 A O ILE 114 A ILE 120 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc7 B O01 R6O . A R6O 201 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc8 B O11 R6O . A R6O 201 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc9 B N05 R6O . A R6O 201 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc10 B O01 R6O . A R6O 201 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc11 D MN MN . A MN 203 1_555 E O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc12 D MN MN . A MN 203 1_555 E O HOH . A HOH 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? # _chem_comp.formula 'C6 H3 Br N2 O2' _chem_comp.formula_weight 215.004 _chem_comp.id R6O _chem_comp.mon_nstd_flag . _chem_comp.name 6-bromo-3-hydroxy-4-oxo-1,4-dihydropyridine-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR08 C07 R6O sing 277 n n N06 C07 R6O sing 278 n n N06 C03 R6O sing 279 n n N05 C04 R6O trip 280 n n C07 C09 R6O doub 281 n n C04 C03 R6O sing 282 n n C03 C02 R6O doub 283 n n C09 C10 R6O sing 284 n n C02 C10 R6O sing 285 n n C02 O01 R6O sing 286 n n C10 O11 R6O doub 287 n n C09 H091 R6O sing 288 n n N06 H061 R6O sing 289 n n O01 H1 R6O sing 290 n n # _atom_sites.entry_id 8DAL _atom_sites.fract_transf_matrix[1][1] 0.013262 _atom_sites.fract_transf_matrix[1][2] 0.007657 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008303 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 R6O A 1 201 200 R6O NIT . C 3 MN A 1 202 301 MN MN . D 3 MN A 1 203 302 MN MN . E 4 HOH A 1 301 94 HOH HOH . E 4 HOH A 2 302 71 HOH HOH . E 4 HOH A 3 303 24 HOH HOH . E 4 HOH A 4 304 89 HOH HOH . E 4 HOH A 5 305 50 HOH HOH . E 4 HOH A 6 306 69 HOH HOH . E 4 HOH A 7 307 74 HOH HOH . E 4 HOH A 8 308 1 HOH HOH . E 4 HOH A 9 309 70 HOH HOH . E 4 HOH A 10 310 2 HOH HOH . E 4 HOH A 11 311 14 HOH HOH . E 4 HOH A 12 312 25 HOH HOH . E 4 HOH A 13 313 42 HOH HOH . E 4 HOH A 14 314 61 HOH HOH . E 4 HOH A 15 315 54 HOH HOH . E 4 HOH A 16 316 20 HOH HOH . E 4 HOH A 17 317 4 HOH HOH . E 4 HOH A 18 318 84 HOH HOH . E 4 HOH A 19 319 91 HOH HOH . E 4 HOH A 20 320 90 HOH HOH . E 4 HOH A 21 321 9 HOH HOH . E 4 HOH A 22 322 22 HOH HOH . E 4 HOH A 23 323 40 HOH HOH . E 4 HOH A 24 324 6 HOH HOH . E 4 HOH A 25 325 3 HOH HOH . E 4 HOH A 26 326 51 HOH HOH . E 4 HOH A 27 327 72 HOH HOH . E 4 HOH A 28 328 111 HOH HOH . E 4 HOH A 29 329 35 HOH HOH . E 4 HOH A 30 330 19 HOH HOH . E 4 HOH A 31 331 15 HOH HOH . E 4 HOH A 32 332 108 HOH HOH . E 4 HOH A 33 333 87 HOH HOH . E 4 HOH A 34 334 16 HOH HOH . E 4 HOH A 35 335 98 HOH HOH . E 4 HOH A 36 336 79 HOH HOH . E 4 HOH A 37 337 48 HOH HOH . E 4 HOH A 38 338 46 HOH HOH . E 4 HOH A 39 339 83 HOH HOH . E 4 HOH A 40 340 10 HOH HOH . E 4 HOH A 41 341 112 HOH HOH . E 4 HOH A 42 342 11 HOH HOH . E 4 HOH A 43 343 66 HOH HOH . E 4 HOH A 44 344 29 HOH HOH . E 4 HOH A 45 345 68 HOH HOH . E 4 HOH A 46 346 43 HOH HOH . E 4 HOH A 47 347 80 HOH HOH . E 4 HOH A 48 348 38 HOH HOH . E 4 HOH A 49 349 8 HOH HOH . E 4 HOH A 50 350 7 HOH HOH . E 4 HOH A 51 351 18 HOH HOH . E 4 HOH A 52 352 34 HOH HOH . E 4 HOH A 53 353 27 HOH HOH . E 4 HOH A 54 354 102 HOH HOH . E 4 HOH A 55 355 114 HOH HOH . E 4 HOH A 56 356 28 HOH HOH . E 4 HOH A 57 357 39 HOH HOH . E 4 HOH A 58 358 31 HOH HOH . E 4 HOH A 59 359 32 HOH HOH . E 4 HOH A 60 360 37 HOH HOH . E 4 HOH A 61 361 12 HOH HOH . E 4 HOH A 62 362 100 HOH HOH . E 4 HOH A 63 363 101 HOH HOH . E 4 HOH A 64 364 81 HOH HOH . E 4 HOH A 65 365 21 HOH HOH . E 4 HOH A 66 366 5 HOH HOH . E 4 HOH A 67 367 36 HOH HOH . E 4 HOH A 68 368 95 HOH HOH . E 4 HOH A 69 369 13 HOH HOH . E 4 HOH A 70 370 85 HOH HOH . E 4 HOH A 71 371 59 HOH HOH . E 4 HOH A 72 372 115 HOH HOH . E 4 HOH A 73 373 30 HOH HOH . E 4 HOH A 74 374 60 HOH HOH . E 4 HOH A 75 375 107 HOH HOH . E 4 HOH A 76 376 106 HOH HOH . E 4 HOH A 77 377 64 HOH HOH . E 4 HOH A 78 378 26 HOH HOH . E 4 HOH A 79 379 109 HOH HOH . E 4 HOH A 80 380 78 HOH HOH . E 4 HOH A 81 381 88 HOH HOH . E 4 HOH A 82 382 110 HOH HOH . E 4 HOH A 83 383 104 HOH HOH . E 4 HOH A 84 384 93 HOH HOH . E 4 HOH A 85 385 23 HOH HOH . E 4 HOH A 86 386 82 HOH HOH . E 4 HOH A 87 387 97 HOH HOH . E 4 HOH A 88 388 41 HOH HOH . E 4 HOH A 89 389 92 HOH HOH . E 4 HOH A 90 390 103 HOH HOH . E 4 HOH A 91 391 99 HOH HOH . E 4 HOH A 92 392 86 HOH HOH . E 4 HOH A 93 393 105 HOH HOH . E 4 HOH A 94 394 57 HOH HOH . E 4 HOH A 95 395 113 HOH HOH . E 4 HOH A 96 396 56 HOH HOH . E 4 HOH A 97 397 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 R6O . . . B 2 19.667 17.231 -13.418 1 42.12 ? C02 R6O 201 A 1 HETATM 2 C C03 R6O . . . B 2 19.348 17.006 -14.893 1 46.51 ? C03 R6O 201 A 1 HETATM 3 C C04 R6O . . . B 2 18.153 16.162 -15.315 1 46.02 ? C04 R6O 201 A 1 HETATM 4 C C07 R6O . . . B 2 21.363 18.445 -15.554 1 58.41 ? C07 R6O 201 A 1 HETATM 5 C C09 R6O . . . B 2 21.692 18.678 -14.084 1 50.75 ? C09 R6O 201 A 1 HETATM 6 C C10 R6O . . . B 2 20.838 18.068 -13.031 1 43.94 ? C10 R6O 201 A 1 HETATM 7 N N05 R6O . . . B 2 17.267 15.536 -15.623 1 50.96 ? N05 R6O 201 A 1 HETATM 8 N N06 R6O . . . B 2 20.197 17.614 -15.936 1 55.79 ? N06 R6O 201 A 1 HETATM 9 O O01 R6O . . . B 2 18.871 16.66 -12.425 1 42.1 -1 O01 R6O 201 A 1 HETATM 10 O O11 R6O . . . B 2 21.097 18.249 -11.892 1 41.28 ? O11 R6O 201 A 1 HETATM 11 BR BR08 R6O . . . B 2 22.48 19.245 -16.923 1 76.77 ? BR08 R6O 201 A 1 HETATM 12 H H091 R6O . . . B 2 22.545 19.285 -13.807 1 61.16 ? H091 R6O 201 A 1 HETATM 13 H H061 R6O . . . B 2 19.986 17.465 -16.903 1 67.2 ? H061 R6O 201 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 13 #