data_8DAR # _model_server_result.job_id EcnyXZGPu_i6-Z6v98KkEA _model_server_result.datetime_utc '2024-10-10 14:28:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dar # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":901}' # _entry.id 8DAR # _exptl.entry_id 8DAR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DAR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DAR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 K N N ? 4 M N N ? 4 O N N ? 4 Q N N ? 4 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G SG CYS 140 G CYS 137 1_555 U ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc2 G NE2 HIS 142 G HIS 139 1_555 U ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc3 G SG CYS 148 G CYS 145 1_555 U ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc4 G SG CYS 151 G CYS 148 1_555 U ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc5 G SG CYS 207 G CYS 204 1_555 V ZN ZN . G ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc6 G NE2 HIS 211 G HIS 208 1_555 V ZN ZN . G ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc7 G SG CYS 219 G CYS 216 1_555 V ZN ZN . G ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc8 G SG CYS 222 G CYS 219 1_555 V ZN ZN . G ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 8DAR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 ATP A 1 901 901 ATP ATP . J 5 ADP A 1 902 902 ADP ADP . K 4 ATP B 1 901 901 ATP ATP . L 5 ADP B 1 902 902 ADP ADP . M 4 ATP C 1 901 901 ATP ATP . N 5 ADP C 1 902 902 ADP ADP . O 4 ATP D 1 901 901 ATP ATP . P 5 ADP D 1 902 902 ADP ADP . Q 4 ATP E 1 901 901 ATP ATP . R 5 ADP E 1 902 902 ADP ADP . S 4 ATP F 1 901 901 ATP ATP . T 5 ADP F 1 902 902 ADP ADP . U 6 ZN G 1 601 601 ZN ZN . V 6 ZN G 1 602 602 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . I 4 211.105 234.892 200.191 1 38.6 ? PG ATP 901 A 1 HETATM 2 O O1G ATP . . . I 4 209.878 234.755 199.358 1 38.6 ? O1G ATP 901 A 1 HETATM 3 O O2G ATP . . . I 4 212.091 233.734 200.032 1 38.6 ? O2G ATP 901 A 1 HETATM 4 O O3G ATP . . . I 4 210.809 235.101 201.678 1 38.6 ? O3G ATP 901 A 1 HETATM 5 P PB ATP . . . I 4 213.181 236.588 198.869 1 38.6 ? PB ATP 901 A 1 HETATM 6 O O1B ATP . . . I 4 214.142 235.483 198.74 1 38.6 ? O1B ATP 901 A 1 HETATM 7 O O2B ATP . . . I 4 212.641 237.149 197.561 1 38.6 ? O2B ATP 901 A 1 HETATM 8 O O3B ATP . . . I 4 211.937 236.188 199.764 1 38.6 ? O3B ATP 901 A 1 HETATM 9 P PA ATP . . . I 4 213.317 238.736 200.879 1 38.6 ? PA ATP 901 A 1 HETATM 10 O O1A ATP . . . I 4 212.525 237.981 201.869 1 38.6 ? O1A ATP 901 A 1 HETATM 11 O O2A ATP . . . I 4 212.611 239.935 200.265 1 38.6 ? O2A ATP 901 A 1 HETATM 12 O O3A ATP . . . I 4 213.784 237.81 199.69 1 38.6 ? O3A ATP 901 A 1 HETATM 13 O O5' ATP . . . I 4 214.678 239.229 201.502 1 38.6 ? O5' ATP 901 A 1 HETATM 14 C C5' ATP . . . I 4 215.521 240.172 200.809 1 38.6 ? C5' ATP 901 A 1 HETATM 15 C C4' ATP . . . I 4 216.325 240.93 201.827 1 38.6 ? C4' ATP 901 A 1 HETATM 16 O O4' ATP . . . I 4 216.931 242.042 201.13 1 38.6 ? O4' ATP 901 A 1 HETATM 17 C C3' ATP . . . I 4 215.404 241.591 202.845 1 38.6 ? C3' ATP 901 A 1 HETATM 18 O O3' ATP . . . I 4 216.25 242.025 203.899 1 38.6 ? O3' ATP 901 A 1 HETATM 19 C C2' ATP . . . I 4 214.989 242.856 202.107 1 38.6 ? C2' ATP 901 A 1 HETATM 20 O O2' ATP . . . I 4 214.722 243.826 203.109 1 38.6 ? O2' ATP 901 A 1 HETATM 21 C C1' ATP . . . I 4 216.34 243.261 201.534 1 38.6 ? C1' ATP 901 A 1 HETATM 22 N N9 ATP . . . I 4 216.204 244.084 200.337 1 38.6 ? N9 ATP 901 A 1 HETATM 23 C C8 ATP . . . I 4 216.077 245.448 200.284 1 38.6 ? C8 ATP 901 A 1 HETATM 24 N N7 ATP . . . I 4 215.983 245.931 199.07 1 38.6 ? N7 ATP 901 A 1 HETATM 25 C C5 ATP . . . I 4 216.051 244.806 198.265 1 38.6 ? C5 ATP 901 A 1 HETATM 26 C C6 ATP . . . I 4 216.006 244.634 196.87 1 38.6 ? C6 ATP 901 A 1 HETATM 27 N N6 ATP . . . I 4 215.876 245.64 196 1 38.6 ? N6 ATP 901 A 1 HETATM 28 N N1 ATP . . . I 4 216.103 243.378 196.389 1 38.6 ? N1 ATP 901 A 1 HETATM 29 C C2 ATP . . . I 4 216.235 242.368 197.253 1 38.6 ? C2 ATP 901 A 1 HETATM 30 N N3 ATP . . . I 4 216.288 242.407 198.585 1 38.6 ? N3 ATP 901 A 1 HETATM 31 C C4 ATP . . . I 4 216.191 243.661 199.032 1 38.6 ? C4 ATP 901 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #