data_8DAR
#
_model_server_result.job_id            AZTFP8mK0fEsQMjq4vERwQ 
_model_server_result.datetime_utc      '2024-10-10 14:26:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dar 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":901}' 
#
_entry.id    8DAR 
#
_exptl.entry_id    8DAR 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DAR 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DAR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 K N N 
? 4 M N N 
? 4 O N N 
? 4 Q N N 
? 4 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 G SG CYS 140 G CYS 137 1_555 U ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc2 G NE2 HIS 142 G HIS 139 1_555 U ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc3 G SG CYS 148 G CYS 145 1_555 U ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc4 G SG CYS 151 G CYS 148 1_555 U ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc5 G SG CYS 207 G CYS 204 1_555 V ZN ZN . G ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc6 G NE2 HIS 211 G HIS 208 1_555 V ZN ZN . G ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc7 G SG CYS 219 G CYS 216 1_555 V ZN ZN . G ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc8 G SG CYS 222 G CYS 219 1_555 V ZN ZN . G ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     8DAR 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 4 ATP A 1 901 901 ATP ATP . 
J 5 ADP A 1 902 902 ADP ADP . 
K 4 ATP B 1 901 901 ATP ATP . 
L 5 ADP B 1 902 902 ADP ADP . 
M 4 ATP C 1 901 901 ATP ATP . 
N 5 ADP C 1 902 902 ADP ADP . 
O 4 ATP D 1 901 901 ATP ATP . 
P 5 ADP D 1 902 902 ADP ADP . 
Q 4 ATP E 1 901 901 ATP ATP . 
R 5 ADP E 1 902 902 ADP ADP . 
S 4 ATP F 1 901 901 ATP ATP . 
T 5 ADP F 1 902 902 ADP ADP . 
U 6 ZN G 1 601 601 ZN ZN . 
V 6 ZN G 1 602 602 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . Q 4 182.971 191.447 181.475 1 38.98 ? PG ATP 901 E 1 
HETATM 2 O O1G ATP . . . Q 4 184.277 192.145 181.317 1 38.98 ? O1G ATP 901 E 1 
HETATM 3 O O2G ATP . . . Q 4 181.839 192.36 181.944 1 38.98 ? O2G ATP 901 E 1 
HETATM 4 O O3G ATP . . . Q 4 183.036 190.225 182.395 1 38.98 ? O3G ATP 901 E 1 
HETATM 5 P PB ATP . . . Q 4 183.052 190.348 178.686 1 38.98 ? PB ATP 901 E 1 
HETATM 6 O O1B ATP . . . Q 4 184.267 191.077 178.294 1 38.98 ? O1B ATP 901 E 1 
HETATM 7 O O2B ATP . . . Q 4 183.206 188.837 178.79 1 38.98 ? O2B ATP 901 E 1 
HETATM 8 O O3B ATP . . . Q 4 182.465 190.868 180.067 1 38.98 ? O3B ATP 901 E 1 
HETATM 9 P PA ATP . . . Q 4 180.274 190.779 177.79 1 38.98 ? PA ATP 901 E 1 
HETATM 10 O O1A ATP . . . Q 4 179.879 191.543 178.989 1 38.98 ? O1A ATP 901 E 1 
HETATM 11 O O2A ATP . . . Q 4 179.677 189.383 177.686 1 38.98 ? O2A ATP 901 E 1 
HETATM 12 O O3A ATP . . . Q 4 181.845 190.627 177.688 1 38.98 ? O3A ATP 901 E 1 
HETATM 13 O O5' ATP . . . Q 4 179.906 191.576 176.478 1 38.98 ? O5' ATP 901 E 1 
HETATM 14 C C5' ATP . . . Q 4 179.861 190.925 175.193 1 38.98 ? C5' ATP 901 E 1 
HETATM 15 C C4' ATP . . . Q 4 178.98 191.732 174.281 1 38.98 ? C4' ATP 901 E 1 
HETATM 16 O O4' ATP . . . Q 4 178.756 190.927 173.101 1 38.98 ? O4' ATP 901 E 1 
HETATM 17 C C3' ATP . . . Q 4 177.591 191.891 174.887 1 38.98 ? C3' ATP 901 E 1 
HETATM 18 O O3' ATP . . . Q 4 176.95 192.89 174.108 1 38.98 ? O3' ATP 901 E 1 
HETATM 19 C C2' ATP . . . Q 4 176.931 190.579 174.487 1 38.98 ? C2' ATP 901 E 1 
HETATM 20 O O2' ATP . . . Q 4 175.54 190.847 174.392 1 38.98 ? O2' ATP 901 E 1 
HETATM 21 C C1' ATP . . . Q 4 177.411 190.498 173.045 1 38.98 ? C1' ATP 901 E 1 
HETATM 22 N N9 ATP . . . Q 4 177.424 189.126 172.551 1 38.98 ? N9 ATP 901 E 1 
HETATM 23 C C8 ATP . . . Q 4 176.387 188.452 171.96 1 38.98 ? C8 ATP 901 E 1 
HETATM 24 N N7 ATP . . . Q 4 176.68 187.226 171.603 1 38.98 ? N7 ATP 901 E 1 
HETATM 25 C C5 ATP . . . Q 4 178.004 187.082 171.986 1 38.98 ? C5 ATP 901 E 1 
HETATM 26 C C6 ATP . . . Q 4 178.908 186.009 171.888 1 38.98 ? C6 ATP 901 E 1 
HETATM 27 N N6 ATP . . . Q 4 178.603 184.825 171.351 1 38.98 ? N6 ATP 901 E 1 
HETATM 28 N N1 ATP . . . Q 4 180.155 186.194 172.366 1 38.98 ? N1 ATP 901 E 1 
HETATM 29 C C2 ATP . . . Q 4 180.469 187.375 172.903 1 38.98 ? C2 ATP 901 E 1 
HETATM 30 N N3 ATP . . . Q 4 179.703 188.457 173.051 1 38.98 ? N3 ATP 901 E 1 
HETATM 31 C C4 ATP . . . Q 4 178.476 188.246 172.569 1 38.98 ? C4 ATP 901 E 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#