data_8DAT
#
_model_server_result.job_id            hQEg4xthHc7yNRRmlbaUqg 
_model_server_result.datetime_utc      '2024-12-26 18:56:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dat 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":901}' 
#
_entry.id    8DAT 
#
_exptl.entry_id    8DAT 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DAT 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DAT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    undecameric 
_pdbx_struct_assembly.oligomeric_count      11 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 L N N 
? 5 N N N 
? 5 R N N 
? 5 T N N 
? 5 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 I NZ LYS 48 J LYS 148 1_555 J C GLY 76 K GLY 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale2 J NZ LYS 48 K LYS 248 1_555 K C GLY 76 L GLY 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? 
metalc ? metalc1 G SG CYS 140 G CYS 137 1_555 X ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc2 G NE2 HIS 142 G HIS 139 1_555 X ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc3 G SG CYS 148 G CYS 145 1_555 X ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc4 G SG CYS 151 G CYS 148 1_555 X ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc5 G SG CYS 207 G CYS 204 1_555 Y ZN ZN . G ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc6 G NE2 HIS 211 G HIS 208 1_555 Y ZN ZN . G ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
metalc ? metalc7 G SG CYS 219 G CYS 216 1_555 Y ZN ZN . G ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc8 G SG CYS 222 G CYS 219 1_555 Y ZN ZN . G ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     8DAT 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
L 5 ATP A 1 901 901 ATP ATP . 
M 6 ADP A 1 902 902 ADP ADP . 
N 5 ATP B 1 901 901 ATP ATP . 
O 6 ADP B 1 902 902 ADP ADP . 
P 6 ADP C 1 901 901 ADP ADP . 
Q 6 ADP C 1 902 902 ADP ADP . 
R 5 ATP D 1 901 901 ATP ATP . 
S 6 ADP D 1 902 902 ADP ADP . 
T 5 ATP E 1 901 901 ATP ATP . 
U 6 ADP E 1 902 902 ADP ADP . 
V 5 ATP F 1 901 901 ATP ATP . 
W 6 ADP F 1 902 902 ADP ADP . 
X 7 ZN G 1 601 601 ZN ZN . 
Y 7 ZN G 1 602 602 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . V 5 189.488 222.379 180.222 1 106.34 ? PG ATP 901 F 1 
HETATM 2 O O1G ATP . . . V 5 190.587 221.387 180.061 1 106.34 ? O1G ATP 901 F 1 
HETATM 3 O O2G ATP . . . V 5 189.706 223.352 181.382 1 106.34 ? O2G ATP 901 F 1 
HETATM 4 O O3G ATP . . . V 5 188.099 221.748 180.354 1 106.34 ? O3G ATP 901 F 1 
HETATM 5 P PB ATP . . . V 5 189.923 223.386 177.442 1 106.34 ? PB ATP 901 F 1 
HETATM 6 O O1B ATP . . . V 5 191.362 223.076 177.368 1 106.34 ? O1B ATP 901 F 1 
HETATM 7 O O2B ATP . . . V 5 189.004 222.52 176.582 1 106.34 ? O2B ATP 901 F 1 
HETATM 8 O O3B ATP . . . V 5 189.383 223.312 178.932 1 106.34 ? O3B ATP 901 F 1 
HETATM 9 P PA ATP . . . V 5 188.62 226.028 177.55 1 106.34 ? PA ATP 901 F 1 
HETATM 10 O O1A ATP . . . V 5 188.503 226.054 179.021 1 106.34 ? O1A ATP 901 F 1 
HETATM 11 O O2A ATP . . . V 5 187.312 225.818 176.794 1 106.34 ? O2A ATP 901 F 1 
HETATM 12 O O3A ATP . . . V 5 189.621 224.903 177.069 1 106.34 ? O3A ATP 901 F 1 
HETATM 13 O O5' ATP . . . V 5 189.297 227.349 177.016 1 106.34 ? O5' ATP 901 F 1 
HETATM 14 C C5' ATP . . . V 5 189.138 227.772 175.646 1 106.34 ? C5' ATP 901 F 1 
HETATM 15 C C4' ATP . . . V 5 189.339 229.261 175.602 1 106.34 ? C4' ATP 901 F 1 
HETATM 16 O O4' ATP . . . V 5 189.153 229.666 174.226 1 106.34 ? O4' ATP 901 F 1 
HETATM 17 C C3' ATP . . . V 5 188.222 229.969 176.363 1 106.34 ? C3' ATP 901 F 1 
HETATM 18 O O3' ATP . . . V 5 188.685 231.291 176.598 1 106.34 ? O3' ATP 901 F 1 
HETATM 19 C C2' ATP . . . V 5 187.141 230.093 175.297 1 106.34 ? C2' ATP 901 F 1 
HETATM 20 O O2' ATP . . . V 5 186.418 231.275 175.606 1 106.34 ? O2' ATP 901 F 1 
HETATM 21 C C1' ATP . . . V 5 188.006 230.482 174.107 1 106.34 ? C1' ATP 901 F 1 
HETATM 22 N N9 ATP . . . V 5 187.369 230.136 172.843 1 106.34 ? N9 ATP 901 F 1 
HETATM 23 C C8 ATP . . . V 5 186.425 230.872 172.175 1 106.34 ? C8 ATP 901 F 1 
HETATM 24 N N7 ATP . . . V 5 186.018 230.329 171.054 1 106.34 ? N7 ATP 901 F 1 
HETATM 25 C C5 ATP . . . V 5 186.745 229.152 170.977 1 106.34 ? C5 ATP 901 F 1 
HETATM 26 C C6 ATP . . . V 5 186.778 228.117 170.024 1 106.34 ? C6 ATP 901 F 1 
HETATM 27 N N6 ATP . . . V 5 186.029 228.103 168.916 1 106.34 ? N6 ATP 901 F 1 
HETATM 28 N N1 ATP . . . V 5 187.616 227.083 170.248 1 106.34 ? N1 ATP 901 F 1 
HETATM 29 C C2 ATP . . . V 5 188.366 227.091 171.352 1 106.34 ? C2 ATP 901 F 1 
HETATM 30 N N3 ATP . . . V 5 188.42 228.008 172.32 1 106.34 ? N3 ATP 901 F 1 
HETATM 31 C C4 ATP . . . V 5 187.583 229.02 172.073 1 106.34 ? C4 ATP 901 F 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    67 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#