data_8DAU # _model_server_result.job_id AItX5WpOY8no_Fm2q8qSbQ _model_server_result.datetime_utc '2024-10-19 11:42:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dau # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":901}' # _entry.id 8DAU # _exptl.entry_id 8DAU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DAU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DAU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details undecameric _pdbx_struct_assembly.oligomeric_count 11 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 N N N ? 5 P N N ? 5 R N N ? 5 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 I NZ LYS 48 I LYS 48 1_555 J C GLY 76 J GLY 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale2 J NZ LYS 48 J LYS 148 1_555 K C GLY 76 K GLY 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? metalc ? metalc1 G SG CYS 140 G CYS 137 1_555 X ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc2 G NE2 HIS 142 G HIS 139 1_555 X ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc3 G SG CYS 148 G CYS 145 1_555 X ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc4 G SG CYS 151 G CYS 148 1_555 X ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc5 G SG CYS 207 G CYS 204 1_555 Y ZN ZN . G ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc6 G NE2 HIS 211 G HIS 208 1_555 Y ZN ZN . G ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc7 G SG CYS 219 G CYS 216 1_555 Y ZN ZN . G ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc8 G SG CYS 222 G CYS 219 1_555 Y ZN ZN . G ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8DAU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 5 ATP A 1 901 901 ATP ATP . M 6 ADP A 1 902 902 ADP ADP . N 5 ATP B 1 901 901 ATP ATP . O 6 ADP B 1 902 902 ADP ADP . P 5 ATP C 1 901 901 ATP ATP . Q 6 ADP C 1 902 902 ADP ADP . R 5 ATP D 1 901 901 ATP ATP . S 6 ADP D 1 902 902 ADP ADP . T 6 ADP E 1 901 901 ADP ADP . U 6 ADP E 1 902 902 ADP ADP . V 5 ATP F 1 901 901 ATP ATP . W 6 ADP F 1 902 902 ADP ADP . X 7 ZN G 1 601 601 ZN ZN . Y 7 ZN G 1 602 602 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . L 5 210.185 234.86 200.385 1 105.6 ? PG ATP 901 A 1 HETATM 2 O O1G ATP . . . L 5 210.477 233.717 199.476 1 105.6 ? O1G ATP 901 A 1 HETATM 3 O O2G ATP . . . L 5 210.444 234.558 201.863 1 105.6 ? O2G ATP 901 A 1 HETATM 4 O O3G ATP . . . L 5 208.769 235.419 200.234 1 105.6 ? O3G ATP 901 A 1 HETATM 5 P PB ATP . . . L 5 212.419 236.438 199.179 1 105.6 ? PB ATP 901 A 1 HETATM 6 O O1B ATP . . . L 5 213.512 235.473 199.4 1 105.6 ? O1B ATP 901 A 1 HETATM 7 O O2B ATP . . . L 5 211.948 236.608 197.735 1 105.6 ? O2B ATP 901 A 1 HETATM 8 O O3B ATP . . . L 5 211.142 236.094 200.056 1 105.6 ? O3B ATP 901 A 1 HETATM 9 P PA ATP . . . L 5 213.088 238.535 201.126 1 105.6 ? PA ATP 901 A 1 HETATM 10 O O1A ATP . . . L 5 214.249 237.901 201.781 1 105.6 ? O1A ATP 901 A 1 HETATM 11 O O2A ATP . . . L 5 211.788 238.477 201.92 1 105.6 ? O2A ATP 901 A 1 HETATM 12 O O3A ATP . . . L 5 212.799 237.882 199.724 1 105.6 ? O3A ATP 901 A 1 HETATM 13 O O5' ATP . . . L 5 213.379 240.039 200.746 1 105.6 ? O5' ATP 901 A 1 HETATM 14 C C5' ATP . . . L 5 213.583 241.042 201.762 1 105.6 ? C5' ATP 901 A 1 HETATM 15 C C4' ATP . . . L 5 214.99 240.924 202.278 1 105.6 ? C4' ATP 901 A 1 HETATM 16 O O4' ATP . . . L 5 215.823 241.699 201.387 1 105.6 ? O4' ATP 901 A 1 HETATM 17 C C3' ATP . . . L 5 215.128 241.64 203.614 1 105.6 ? C3' ATP 901 A 1 HETATM 18 O O3' ATP . . . L 5 216.409 241.282 204.114 1 105.6 ? O3' ATP 901 A 1 HETATM 19 C C2' ATP . . . L 5 215.248 243.092 203.171 1 105.6 ? C2' ATP 901 A 1 HETATM 20 O O2' ATP . . . L 5 216.03 243.738 204.165 1 105.6 ? O2' ATP 901 A 1 HETATM 21 C C1' ATP . . . L 5 216.197 242.925 201.988 1 105.6 ? C1' ATP 901 A 1 HETATM 22 N N9 ATP . . . L 5 215.991 243.965 200.988 1 105.6 ? N9 ATP 901 A 1 HETATM 23 C C8 ATP . . . L 5 215.779 245.299 201.22 1 105.6 ? C8 ATP 901 A 1 HETATM 24 N N7 ATP . . . L 5 215.626 246.015 200.133 1 105.6 ? N7 ATP 901 A 1 HETATM 25 C C5 ATP . . . L 5 215.746 245.087 199.111 1 105.6 ? C5 ATP 901 A 1 HETATM 26 C C6 ATP . . . L 5 215.68 245.204 197.71 1 105.6 ? C6 ATP 901 A 1 HETATM 27 N N6 ATP . . . L 5 215.469 246.358 197.069 1 105.6 ? N6 ATP 901 A 1 HETATM 28 N N1 ATP . . . L 5 215.841 244.082 196.977 1 105.6 ? N1 ATP 901 A 1 HETATM 29 C C2 ATP . . . L 5 216.052 242.926 197.611 1 105.6 ? C2 ATP 901 A 1 HETATM 30 N N3 ATP . . . L 5 216.134 242.694 198.922 1 105.6 ? N3 ATP 901 A 1 HETATM 31 C C4 ATP . . . L 5 215.972 243.82 199.622 1 105.6 ? C4 ATP 901 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #