data_8DAU
#
_model_server_result.job_id            XWaa5x2Pa4mgOU0BZXTnBg 
_model_server_result.datetime_utc      '2024-10-19 11:47:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dau 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":902}' 
#
_entry.id    8DAU 
#
_exptl.entry_id    8DAU 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DAU 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DAU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    undecameric 
_pdbx_struct_assembly.oligomeric_count      11 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 M N N 
? 6 O N N 
? 6 Q N N 
? 6 S N N 
? 6 T N N 
? 6 U N N 
? 6 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 I NZ LYS 48 I LYS 48 1_555 J C GLY 76 J GLY 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? 
covale ? covale2 J NZ LYS 48 J LYS 148 1_555 K C GLY 76 K GLY 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? 
metalc ? metalc1 G SG CYS 140 G CYS 137 1_555 X ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc2 G NE2 HIS 142 G HIS 139 1_555 X ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc3 G SG CYS 148 G CYS 145 1_555 X ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc4 G SG CYS 151 G CYS 148 1_555 X ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc5 G SG CYS 207 G CYS 204 1_555 Y ZN ZN . G ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc6 G NE2 HIS 211 G HIS 208 1_555 Y ZN ZN . G ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc7 G SG CYS 219 G CYS 216 1_555 Y ZN ZN . G ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc8 G SG CYS 222 G CYS 219 1_555 Y ZN ZN . G ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8DAU 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
L 5 ATP A 1 901 901 ATP ATP . 
M 6 ADP A 1 902 902 ADP ADP . 
N 5 ATP B 1 901 901 ATP ATP . 
O 6 ADP B 1 902 902 ADP ADP . 
P 5 ATP C 1 901 901 ATP ATP . 
Q 6 ADP C 1 902 902 ADP ADP . 
R 5 ATP D 1 901 901 ATP ATP . 
S 6 ADP D 1 902 902 ADP ADP . 
T 6 ADP E 1 901 901 ADP ADP . 
U 6 ADP E 1 902 902 ADP ADP . 
V 5 ATP F 1 901 901 ATP ATP . 
W 6 ADP F 1 902 902 ADP ADP . 
X 7 ZN G 1 601 601 ZN ZN . 
Y 7 ZN G 1 602 602 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . M 6 237.486 233.32 175.602 1 147.88 ? PB ADP 902 A 1 
HETATM 2 O O1B ADP . . . M 6 238.452 232.982 174.494 1 147.88 ? O1B ADP 902 A 1 
HETATM 3 O O2B ADP . . . M 6 236.827 234.668 175.454 1 147.88 ? O2B ADP 902 A 1 
HETATM 4 O O3B ADP . . . M 6 236.542 232.196 175.95 1 147.88 ? O3B ADP 902 A 1 
HETATM 5 P PA ADP . . . M 6 237.829 234.159 178.25 1 147.88 ? PA ADP 902 A 1 
HETATM 6 O O1A ADP . . . M 6 236.409 234.587 177.977 1 147.88 ? O1A ADP 902 A 1 
HETATM 7 O O2A ADP . . . M 6 238.103 233.214 179.394 1 147.88 ? O2A ADP 902 A 1 
HETATM 8 O O3A ADP . . . M 6 238.412 233.479 176.91 1 147.88 ? O3A ADP 902 A 1 
HETATM 9 O O5' ADP . . . M 6 238.75 235.464 178.459 1 147.88 ? O5' ADP 902 A 1 
HETATM 10 C C5' ADP . . . M 6 239.172 236.265 177.359 1 147.88 ? C5' ADP 902 A 1 
HETATM 11 C C4' ADP . . . M 6 240.095 237.376 177.847 1 147.88 ? C4' ADP 902 A 1 
HETATM 12 O O4' ADP . . . M 6 240.681 238.043 176.727 1 147.88 ? O4' ADP 902 A 1 
HETATM 13 C C3' ADP . . . M 6 239.353 238.42 178.668 1 147.88 ? C3' ADP 902 A 1 
HETATM 14 O O3' ADP . . . M 6 239.813 238.408 180.023 1 147.88 ? O3' ADP 902 A 1 
HETATM 15 C C2' ADP . . . M 6 239.649 239.758 178.014 1 147.88 ? C2' ADP 902 A 1 
HETATM 16 O O2' ADP . . . M 6 240.259 240.665 178.938 1 147.88 ? O2' ADP 902 A 1 
HETATM 17 C C1' ADP . . . M 6 240.593 239.464 176.855 1 147.88 ? C1' ADP 902 A 1 
HETATM 18 N N9 ADP . . . M 6 240.11 240.015 175.565 1 147.88 ? N9 ADP 902 A 1 
HETATM 19 C C8 ADP . . . M 6 239.421 241.154 175.355 1 147.88 ? C8 ADP 902 A 1 
HETATM 20 N N7 ADP . . . M 6 239.166 241.32 174.031 1 147.88 ? N7 ADP 902 A 1 
HETATM 21 C C5 ADP . . . M 6 239.709 240.279 173.374 1 147.88 ? C5 ADP 902 A 1 
HETATM 22 C C6 ADP . . . M 6 239.817 239.828 171.968 1 147.88 ? C6 ADP 902 A 1 
HETATM 23 N N6 ADP . . . M 6 239.278 240.539 170.952 1 147.88 ? N6 ADP 902 A 1 
HETATM 24 N N1 ADP . . . M 6 240.475 238.673 171.727 1 147.88 ? N1 ADP 902 A 1 
HETATM 25 C C2 ADP . . . M 6 241.024 237.942 172.714 1 147.88 ? C2 ADP 902 A 1 
HETATM 26 N N3 ADP . . . M 6 240.961 238.295 174.007 1 147.88 ? N3 ADP 902 A 1 
HETATM 27 C C4 ADP . . . M 6 240.335 239.43 174.392 1 147.88 ? C4 ADP 902 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    54 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           27 
#