data_8DAY # _model_server_result.job_id KG6jYurcCcqoOdi6P6Uszw _model_server_result.datetime_utc '2025-01-10 18:17:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8day # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 8DAY # _exptl.entry_id 8DAY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 181.189 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description TYROSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DAY _cell.length_a 90.066 _cell.length_b 107.717 _cell.length_c 180.722 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DAY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G 1 1 B,H 2 1 C,I 3 1 D,J 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H11 N O3' _chem_comp.formula_weight 181.189 _chem_comp.id TYR _chem_comp.mon_nstd_flag y _chem_comp.name TYROSINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TYR sing 359 n n N H TYR sing 360 n n N H2 TYR sing 361 n n CA C TYR sing 362 n n CA CB TYR sing 363 n n CA HA TYR sing 364 n n C O TYR doub 365 n n C OXT TYR sing 366 n n CB CG TYR sing 367 n n CB HB2 TYR sing 368 n n CB HB3 TYR sing 369 n n CG CD1 TYR doub 370 n y CG CD2 TYR sing 371 n y CD1 CE1 TYR sing 372 n y CD1 HD1 TYR sing 373 n n CD2 CE2 TYR doub 374 n y CD2 HD2 TYR sing 375 n n CE1 CZ TYR doub 376 n y CE1 HE1 TYR sing 377 n n CE2 CZ TYR sing 378 n y CE2 HE2 TYR sing 379 n n CZ OH TYR sing 380 n n OH HH TYR sing 381 n n OXT HXT TYR sing 382 n n # _atom_sites.entry_id 8DAY _atom_sites.fract_transf_matrix[1][1] 0.011103 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005533 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 TYR A 1 501 501 TYR LTY . F 3 DST A 1 502 502 DST DST . G 4 HOH A 1 601 10 HOH HOH . G 4 HOH A 2 602 37 HOH HOH . G 4 HOH A 3 603 29 HOH HOH . G 4 HOH A 4 604 12 HOH HOH . G 4 HOH A 5 605 30 HOH HOH . G 4 HOH A 6 606 7 HOH HOH . G 4 HOH A 7 607 8 HOH HOH . G 4 HOH A 8 608 19 HOH HOH . G 4 HOH A 9 609 20 HOH HOH . G 4 HOH A 10 610 28 HOH HOH . G 4 HOH A 11 611 31 HOH HOH . G 4 HOH A 12 612 33 HOH HOH . G 4 HOH A 13 613 5 HOH HOH . G 4 HOH A 14 614 41 HOH HOH . G 4 HOH A 15 615 46 HOH HOH . G 4 HOH A 16 616 16 HOH HOH . G 4 HOH A 17 617 40 HOH HOH . G 4 HOH A 18 618 22 HOH HOH . G 4 HOH A 19 619 52 HOH HOH . G 4 HOH A 20 620 47 HOH HOH . G 4 HOH A 21 621 43 HOH HOH . G 4 HOH A 22 622 6 HOH HOH . G 4 HOH A 23 623 3 HOH HOH . G 4 HOH A 24 624 34 HOH HOH . G 4 HOH A 25 625 9 HOH HOH . G 4 HOH A 26 626 25 HOH HOH . G 4 HOH A 27 627 45 HOH HOH . G 4 HOH A 28 628 49 HOH HOH . G 4 HOH A 29 629 36 HOH HOH . G 4 HOH A 30 630 51 HOH HOH . H 4 HOH B 1 501 24 HOH HOH . H 4 HOH B 2 502 21 HOH HOH . H 4 HOH B 3 503 26 HOH HOH . H 4 HOH B 4 504 38 HOH HOH . H 4 HOH B 5 505 27 HOH HOH . H 4 HOH B 6 506 23 HOH HOH . H 4 HOH B 7 507 14 HOH HOH . H 4 HOH B 8 508 15 HOH HOH . H 4 HOH B 9 509 4 HOH HOH . H 4 HOH B 10 510 42 HOH HOH . H 4 HOH B 11 511 50 HOH HOH . I 4 HOH C 1 501 1 HOH HOH . I 4 HOH C 2 502 11 HOH HOH . I 4 HOH C 3 503 44 HOH HOH . I 4 HOH C 4 504 18 HOH HOH . I 4 HOH C 5 505 17 HOH HOH . J 4 HOH D 1 501 39 HOH HOH . J 4 HOH D 2 502 2 HOH HOH . J 4 HOH D 3 503 13 HOH HOH . J 4 HOH D 4 504 35 HOH HOH . J 4 HOH D 5 505 32 HOH HOH . J 4 HOH D 6 506 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TYR . . . E 2 -22.102 -71.932 -79.344 1 41.78 ? N TYR 501 A 1 HETATM 2 C CA TYR . . . E 2 -21.556 -73.218 -78.968 1 51.11 ? CA TYR 501 A 1 HETATM 3 C C TYR . . . E 2 -22.692 -74.226 -78.784 1 56.34 ? C TYR 501 A 1 HETATM 4 O O TYR . . . E 2 -23.892 -73.845 -78.793 1 47.94 ? O TYR 501 A 1 HETATM 5 C CB TYR . . . E 2 -20.751 -73.07 -77.673 1 58.08 ? CB TYR 501 A 1 HETATM 6 C CG TYR . . . E 2 -21.621 -72.788 -76.441 1 55.51 ? CG TYR 501 A 1 HETATM 7 C CD1 TYR . . . E 2 -21.928 -71.482 -76.107 1 53.65 ? CD1 TYR 501 A 1 HETATM 8 C CD2 TYR . . . E 2 -22.098 -73.834 -75.66 1 62.89 ? CD2 TYR 501 A 1 HETATM 9 C CE1 TYR . . . E 2 -22.712 -71.221 -74.996 1 51.65 ? CE1 TYR 501 A 1 HETATM 10 C CE2 TYR . . . E 2 -22.885 -73.575 -74.549 1 69.93 ? CE2 TYR 501 A 1 HETATM 11 C CZ TYR . . . E 2 -23.191 -72.261 -74.219 1 67.02 ? CZ TYR 501 A 1 HETATM 12 O OH TYR . . . E 2 -23.988 -71.984 -73.097 0.92 75.42 ? OH TYR 501 A 1 HETATM 13 O OXT TYR . . . E 2 -22.418 -75.446 -78.615 1 59.33 -1 OXT TYR 501 A 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #