data_8DAZ
#
_model_server_result.job_id            Y3l2w60O-W6zA9WrZNgLhA 
_model_server_result.datetime_utc      '2025-01-10 18:19:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8daz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    8DAZ 
#
_exptl.entry_id    8DAZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              330.275 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'GERANYL S-THIOLODIPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DAZ 
_cell.length_a            89.832 
_cell.length_b            107.357 
_cell.length_c            179.301 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DAZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,H 1 1 
B,I 2 1 
C,F,G,J 3 1 
D,K 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H20 O6 P2 S' 
_chem_comp.formula_weight    330.275 
_chem_comp.id                GST 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'GERANYL S-THIOLODIPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'S-[(2E)-3,7-DIMETHYLOCTA-2,6-DIENYL] TRIHYDROGEN THIODIPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A GST sing 129 n n 
PA O2A GST doub 130 n n 
PA O3A GST sing 131 n n 
PA O1B GST sing 132 n n 
O1A H1A GST sing 133 n n 
O3A H3A GST sing 134 n n 
O1B PB GST sing 135 n n 
PB O2B GST doub 136 n n 
PB O3B GST sing 137 n n 
PB S1 GST sing 138 n n 
O3B H3B GST sing 139 n n 
S1 C1 GST sing 140 n n 
C1 C2 GST sing 141 n n 
C1 H11 GST sing 142 n n 
C1 H12 GST sing 143 n n 
C2 C3 GST doub 144 e n 
C2 H2 GST sing 145 n n 
C3 C10 GST sing 146 n n 
C3 C4 GST sing 147 n n 
C10 H101 GST sing 148 n n 
C10 H102 GST sing 149 n n 
C10 H103 GST sing 150 n n 
C4 C5 GST sing 151 n n 
C4 H41 GST sing 152 n n 
C4 H42 GST sing 153 n n 
C5 C6 GST sing 154 n n 
C5 H51 GST sing 155 n n 
C5 H52 GST sing 156 n n 
C6 C7 GST doub 157 n n 
C6 H6 GST sing 158 n n 
C7 C9 GST sing 159 n n 
C7 C8 GST sing 160 n n 
C9 H91 GST sing 161 n n 
C9 H92 GST sing 162 n n 
C9 H93 GST sing 163 n n 
C8 H81 GST sing 164 n n 
C8 H82 GST sing 165 n n 
C8 H83 GST sing 166 n n 
#
_atom_sites.entry_id                     8DAZ 
_atom_sites.fract_transf_matrix[1][1]    0.011132 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009315 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005577 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 TRP A 1 501 501 TRP LTW . 
F 3 GST C 1 501 501 GST GST . 
G 2 TRP C 1 502 502 TRP LTW . 
H 4 HOH A 1 601 6 HOH HOH . 
H 4 HOH A 2 602 34 HOH HOH . 
H 4 HOH A 3 603 61 HOH HOH . 
H 4 HOH A 4 604 71 HOH HOH . 
H 4 HOH A 5 605 51 HOH HOH . 
H 4 HOH A 6 606 87 HOH HOH . 
H 4 HOH A 7 607 45 HOH HOH . 
H 4 HOH A 8 608 67 HOH HOH . 
H 4 HOH A 9 609 69 HOH HOH . 
H 4 HOH A 10 610 24 HOH HOH . 
H 4 HOH A 11 611 65 HOH HOH . 
H 4 HOH A 12 612 64 HOH HOH . 
H 4 HOH A 13 613 98 HOH HOH . 
H 4 HOH A 14 614 83 HOH HOH . 
H 4 HOH A 15 615 30 HOH HOH . 
H 4 HOH A 16 616 81 HOH HOH . 
H 4 HOH A 17 617 13 HOH HOH . 
H 4 HOH A 18 618 50 HOH HOH . 
H 4 HOH A 19 619 7 HOH HOH . 
H 4 HOH A 20 620 18 HOH HOH . 
H 4 HOH A 21 621 90 HOH HOH . 
H 4 HOH A 22 622 33 HOH HOH . 
H 4 HOH A 23 623 26 HOH HOH . 
H 4 HOH A 24 624 28 HOH HOH . 
H 4 HOH A 25 625 47 HOH HOH . 
H 4 HOH A 26 626 52 HOH HOH . 
H 4 HOH A 27 627 94 HOH HOH . 
H 4 HOH A 28 628 4 HOH HOH . 
H 4 HOH A 29 629 57 HOH HOH . 
H 4 HOH A 30 630 92 HOH HOH . 
H 4 HOH A 31 631 53 HOH HOH . 
H 4 HOH A 32 632 78 HOH HOH . 
H 4 HOH A 33 633 41 HOH HOH . 
H 4 HOH A 34 634 91 HOH HOH . 
H 4 HOH A 35 635 37 HOH HOH . 
H 4 HOH A 36 636 38 HOH HOH . 
H 4 HOH A 37 637 93 HOH HOH . 
H 4 HOH A 38 638 23 HOH HOH . 
H 4 HOH A 39 639 103 HOH HOH . 
H 4 HOH A 40 640 70 HOH HOH . 
H 4 HOH A 41 641 8 HOH HOH . 
H 4 HOH A 42 642 5 HOH HOH . 
H 4 HOH A 43 643 107 HOH HOH . 
I 4 HOH B 1 501 43 HOH HOH . 
I 4 HOH B 2 502 27 HOH HOH . 
I 4 HOH B 3 503 75 HOH HOH . 
I 4 HOH B 4 504 14 HOH HOH . 
I 4 HOH B 5 505 36 HOH HOH . 
I 4 HOH B 6 506 60 HOH HOH . 
I 4 HOH B 7 507 49 HOH HOH . 
I 4 HOH B 8 508 32 HOH HOH . 
I 4 HOH B 9 509 95 HOH HOH . 
I 4 HOH B 10 510 104 HOH HOH . 
I 4 HOH B 11 511 84 HOH HOH . 
I 4 HOH B 12 512 80 HOH HOH . 
I 4 HOH B 13 513 31 HOH HOH . 
I 4 HOH B 14 514 17 HOH HOH . 
I 4 HOH B 15 515 68 HOH HOH . 
I 4 HOH B 16 516 19 HOH HOH . 
I 4 HOH B 17 517 79 HOH HOH . 
I 4 HOH B 18 518 16 HOH HOH . 
I 4 HOH B 19 519 12 HOH HOH . 
I 4 HOH B 20 520 102 HOH HOH . 
I 4 HOH B 21 521 76 HOH HOH . 
I 4 HOH B 22 522 20 HOH HOH . 
J 4 HOH C 1 601 59 HOH HOH . 
J 4 HOH C 2 602 44 HOH HOH . 
J 4 HOH C 3 603 40 HOH HOH . 
J 4 HOH C 4 604 89 HOH HOH . 
J 4 HOH C 5 605 99 HOH HOH . 
J 4 HOH C 6 606 62 HOH HOH . 
J 4 HOH C 7 607 73 HOH HOH . 
J 4 HOH C 8 608 86 HOH HOH . 
J 4 HOH C 9 609 58 HOH HOH . 
J 4 HOH C 10 610 1 HOH HOH . 
J 4 HOH C 11 611 101 HOH HOH . 
J 4 HOH C 12 612 39 HOH HOH . 
J 4 HOH C 13 613 10 HOH HOH . 
J 4 HOH C 14 614 63 HOH HOH . 
J 4 HOH C 15 615 97 HOH HOH . 
J 4 HOH C 16 616 105 HOH HOH . 
J 4 HOH C 17 617 54 HOH HOH . 
J 4 HOH C 18 618 9 HOH HOH . 
J 4 HOH C 19 619 74 HOH HOH . 
J 4 HOH C 20 620 56 HOH HOH . 
J 4 HOH C 21 621 15 HOH HOH . 
J 4 HOH C 22 622 100 HOH HOH . 
J 4 HOH C 23 623 3 HOH HOH . 
J 4 HOH C 24 624 2 HOH HOH . 
K 4 HOH D 1 501 29 HOH HOH . 
K 4 HOH D 2 502 11 HOH HOH . 
K 4 HOH D 3 503 55 HOH HOH . 
K 4 HOH D 4 504 85 HOH HOH . 
K 4 HOH D 5 505 48 HOH HOH . 
K 4 HOH D 6 506 35 HOH HOH . 
K 4 HOH D 7 507 96 HOH HOH . 
K 4 HOH D 8 508 21 HOH HOH . 
K 4 HOH D 9 509 72 HOH HOH . 
K 4 HOH D 10 510 82 HOH HOH . 
K 4 HOH D 11 511 88 HOH HOH . 
K 4 HOH D 12 512 42 HOH HOH . 
K 4 HOH D 13 513 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA GST . . . F 3 25.627 38.094 -30.375 0.76 101.52 ? PA GST 501 C 1 
HETATM 2 O O1A GST . . . F 3 25.415 37.245 -29.147 0.76 96.32 -1 O1A GST 501 C 1 
HETATM 3 O O2A GST . . . F 3 26.124 37.235 -31.509 0.76 104.08 -1 O2A GST 501 C 1 
HETATM 4 O O3A GST . . . F 3 26.625 39.185 -30.132 0.76 100.77 ? O3A GST 501 C 1 
HETATM 5 O O1B GST . . . F 3 24.269 38.901 -30.799 0.76 96.27 ? O1B GST 501 C 1 
HETATM 6 P PB GST . . . F 3 22.825 38.753 -30.051 0.76 89.78 ? PB GST 501 C 1 
HETATM 7 O O2B GST . . . F 3 22.339 37.34 -30.184 0.76 90.64 ? O2B GST 501 C 1 
HETATM 8 O O3B GST . . . F 3 22.971 39.139 -28.631 0.76 85.78 -1 O3B GST 501 C 1 
HETATM 9 S S1 GST . . . F 3 21.489 40.078 -31.003 0.76 90.44 ? S1 GST 501 C 1 
HETATM 10 C C1 GST . . . F 3 20.058 40.526 -30.028 0.76 79.16 ? C1 GST 501 C 1 
HETATM 11 C C2 GST . . . F 3 19.368 39.221 -29.919 0.76 71.66 ? C2 GST 501 C 1 
HETATM 12 C C3 GST . . . F 3 18.269 39.125 -29.247 0.76 71.1 ? C3 GST 501 C 1 
HETATM 13 C C10 GST . . . F 3 17.655 40.328 -28.579 0.76 74.25 ? C10 GST 501 C 1 
HETATM 14 C C4 GST . . . F 3 17.652 37.764 -29.166 0.76 71.06 ? C4 GST 501 C 1 
HETATM 15 C C5 GST . . . F 3 18.892 36.89 -29.14 0.76 70.14 ? C5 GST 501 C 1 
HETATM 16 C C6 GST . . . F 3 18.66 35.765 -30.091 0.76 61.71 ? C6 GST 501 C 1 
HETATM 17 C C7 GST . . . F 3 19.46 34.757 -30.038 0.76 51.2 ? C7 GST 501 C 1 
HETATM 18 C C9 GST . . . F 3 20.669 34.622 -29.122 0.76 40.91 ? C9 GST 501 C 1 
HETATM 19 C C8 GST . . . F 3 19.085 33.695 -30.994 0.76 48.99 ? C8 GST 501 C 1 
#
_model_server_stats.io_time_ms              87 
_model_server_stats.parse_time_ms           67 
_model_server_stats.create_model_time_ms    69 
_model_server_stats.query_time_ms           371 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           19 
#