data_8DB1 # _model_server_result.job_id jEy4utV4FRvTDaJ2C859tA _model_server_result.datetime_utc '2025-01-25 13:30:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8db1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 8DB1 # _exptl.entry_id 8DB1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.225 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRYPTOPHAN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DB1 _cell.length_a 89.644 _cell.length_b 107.211 _cell.length_c 178.984 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DB1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F 1 1 B,G 2 1 C,H 3 1 D,I 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H12 N2 O2' _chem_comp.formula_weight 204.225 _chem_comp.id TRP _chem_comp.mon_nstd_flag y _chem_comp.name TRYPTOPHAN _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TRP sing 306 n n N H TRP sing 307 n n N H2 TRP sing 308 n n CA C TRP sing 309 n n CA CB TRP sing 310 n n CA HA TRP sing 311 n n C O TRP doub 312 n n C OXT TRP sing 313 n n CB CG TRP sing 314 n n CB HB2 TRP sing 315 n n CB HB3 TRP sing 316 n n CG CD1 TRP doub 317 n y CG CD2 TRP sing 318 n y CD1 NE1 TRP sing 319 n y CD1 HD1 TRP sing 320 n n CD2 CE2 TRP doub 321 n y CD2 CE3 TRP sing 322 n y NE1 CE2 TRP sing 323 n y NE1 HE1 TRP sing 324 n n CE2 CZ2 TRP sing 325 n y CE3 CZ3 TRP doub 326 n y CE3 HE3 TRP sing 327 n n CZ2 CH2 TRP doub 328 n y CZ2 HZ2 TRP sing 329 n n CZ3 CH2 TRP sing 330 n y CZ3 HZ3 TRP sing 331 n n CH2 HH2 TRP sing 332 n n OXT HXT TRP sing 333 n n # _atom_sites.entry_id 8DB1 _atom_sites.fract_transf_matrix[1][1] 0.011155 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009327 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005587 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 TRP A 1 501 501 TRP LTW . F 3 HOH A 1 601 16 HOH HOH . F 3 HOH A 2 602 26 HOH HOH . F 3 HOH A 3 603 7 HOH HOH . F 3 HOH A 4 604 13 HOH HOH . F 3 HOH A 5 605 29 HOH HOH . F 3 HOH A 6 606 11 HOH HOH . F 3 HOH A 7 607 1 HOH HOH . F 3 HOH A 8 608 19 HOH HOH . F 3 HOH A 9 609 14 HOH HOH . F 3 HOH A 10 610 2 HOH HOH . G 3 HOH B 1 501 27 HOH HOH . G 3 HOH B 2 502 17 HOH HOH . G 3 HOH B 3 503 9 HOH HOH . G 3 HOH B 4 504 3 HOH HOH . G 3 HOH B 5 505 15 HOH HOH . G 3 HOH B 6 506 22 HOH HOH . G 3 HOH B 7 507 8 HOH HOH . G 3 HOH B 8 508 12 HOH HOH . G 3 HOH B 9 509 23 HOH HOH . G 3 HOH B 10 510 28 HOH HOH . H 3 HOH C 1 501 24 HOH HOH . H 3 HOH C 2 502 20 HOH HOH . H 3 HOH C 3 503 18 HOH HOH . H 3 HOH C 4 504 6 HOH HOH . H 3 HOH C 5 505 4 HOH HOH . H 3 HOH C 6 506 30 HOH HOH . I 3 HOH D 1 501 5 HOH HOH . I 3 HOH D 2 502 25 HOH HOH . I 3 HOH D 3 503 21 HOH HOH . I 3 HOH D 4 504 31 HOH HOH . I 3 HOH D 5 505 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TRP . . . E 2 22.86 -17.774 -10.868 0.96 45.52 ? N TRP 501 A 1 HETATM 2 C CA TRP . . . E 2 22.157 -19.005 -11.16 0.96 42.58 ? CA TRP 501 A 1 HETATM 3 C C TRP . . . E 2 23.173 -20.105 -11.445 0.96 48.57 ? C TRP 501 A 1 HETATM 4 O O TRP . . . E 2 22.754 -21.252 -11.777 0.96 53.36 -1 O TRP 501 A 1 HETATM 5 C CB TRP . . . E 2 21.259 -18.804 -12.373 0.96 40.75 ? CB TRP 501 A 1 HETATM 6 C CG TRP . . . E 2 21.989 -18.256 -13.595 0.96 42.33 ? CG TRP 501 A 1 HETATM 7 C CD1 TRP . . . E 2 22.039 -16.933 -13.993 0.96 43.12 ? CD1 TRP 501 A 1 HETATM 8 C CD2 TRP . . . E 2 22.715 -19.008 -14.537 0.96 47.72 ? CD2 TRP 501 A 1 HETATM 9 N NE1 TRP . . . E 2 22.753 -16.857 -15.111 0.96 43.67 ? NE1 TRP 501 A 1 HETATM 10 C CE2 TRP . . . E 2 23.179 -18.107 -15.467 0.96 48.8 ? CE2 TRP 501 A 1 HETATM 11 C CE3 TRP . . . E 2 23.012 -20.393 -14.661 0.96 50.13 ? CE3 TRP 501 A 1 HETATM 12 C CZ2 TRP . . . E 2 23.971 -18.558 -16.557 0.96 52.25 ? CZ2 TRP 501 A 1 HETATM 13 C CZ3 TRP . . . E 2 23.785 -20.836 -15.73 0.96 53.78 ? CZ3 TRP 501 A 1 HETATM 14 C CH2 TRP . . . E 2 24.26 -19.915 -16.674 0.96 55.73 ? CH2 TRP 501 A 1 HETATM 15 O OXT TRP . . . E 2 24.413 -19.869 -11.356 0.96 46.95 ? OXT TRP 501 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 71 _model_server_stats.query_time_ms 535 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #