data_8DB2 # _model_server_result.job_id R8ZL97aCrbhuK_mIK3uplw _model_server_result.datetime_utc '2024-11-15 14:46:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8db2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8DB2 # _exptl.entry_id 8DB2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 257.328 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E)-3-[7-(diethylamino)-2-oxo-2H-1-benzopyran-3-yl]prop-2-enal,bound form' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DB2 _cell.length_a 29.075 _cell.length_b 66.292 _cell.length_c 63.618 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DB2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 108 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 108 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C16 _struct_conn.ptnr2_label_comp_id RH6 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RH6 _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.429 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H19 N O2' _chem_comp.formula_weight 257.328 _chem_comp.id RH6 _chem_comp.mon_nstd_flag . _chem_comp.name '(2E)-3-[7-(diethylamino)-2-oxo-2H-1-benzopyran-3-yl]prop-2-enal, bound form' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C15 RH6 sing 260 n n C15 C14 RH6 doub 261 e n C14 C13 RH6 sing 262 n n C19 C13 RH6 doub 263 n n C19 C20 RH6 sing 264 n n C13 C11 RH6 sing 265 n n O12 C11 RH6 doub 266 n n C20 C21 RH6 doub 267 n y C20 C09 RH6 sing 268 n y C21 C01 RH6 sing 269 n y C11 O10 RH6 sing 270 n n O10 C09 RH6 sing 271 n n C09 C08 RH6 doub 272 n y C01 C02 RH6 doub 273 n y C08 C02 RH6 sing 274 n y C02 N03 RH6 sing 275 n n N03 C04 RH6 sing 276 n n N03 C06 RH6 sing 277 n n C04 C05 RH6 sing 278 n n C07 C06 RH6 sing 279 n n C15 H1 RH6 sing 280 n n C21 H2 RH6 sing 281 n n C01 H3 RH6 sing 282 n n C04 H4 RH6 sing 283 n n C04 H5 RH6 sing 284 n n C05 H6 RH6 sing 285 n n C05 H7 RH6 sing 286 n n C05 H8 RH6 sing 287 n n C06 H9 RH6 sing 288 n n C06 H10 RH6 sing 289 n n C07 H11 RH6 sing 290 n n C07 H12 RH6 sing 291 n n C07 H13 RH6 sing 292 n n C08 H14 RH6 sing 293 n n C14 H15 RH6 sing 294 n n C16 H16 RH6 sing 295 n n C16 H17 RH6 sing 296 n n C16 H18 RH6 sing 297 n n C19 H19 RH6 sing 298 n n # _atom_sites.entry_id 8DB2 _atom_sites.fract_transf_matrix[1][1] 0.034394 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RH6 A 1 201 201 RH6 LIG . C 3 HOH A 1 301 68 HOH HOH . C 3 HOH A 2 302 22 HOH HOH . C 3 HOH A 3 303 28 HOH HOH . C 3 HOH A 4 304 25 HOH HOH . C 3 HOH A 5 305 54 HOH HOH . C 3 HOH A 6 306 26 HOH HOH . C 3 HOH A 7 307 57 HOH HOH . C 3 HOH A 8 308 48 HOH HOH . C 3 HOH A 9 309 44 HOH HOH . C 3 HOH A 10 310 12 HOH HOH . C 3 HOH A 11 311 13 HOH HOH . C 3 HOH A 12 312 38 HOH HOH . C 3 HOH A 13 313 17 HOH HOH . C 3 HOH A 14 314 55 HOH HOH . C 3 HOH A 15 315 1 HOH HOH . C 3 HOH A 16 316 11 HOH HOH . C 3 HOH A 17 317 10 HOH HOH . C 3 HOH A 18 318 72 HOH HOH . C 3 HOH A 19 319 71 HOH HOH . C 3 HOH A 20 320 47 HOH HOH . C 3 HOH A 21 321 67 HOH HOH . C 3 HOH A 22 322 36 HOH HOH . C 3 HOH A 23 323 70 HOH HOH . C 3 HOH A 24 324 32 HOH HOH . C 3 HOH A 25 325 2 HOH HOH . C 3 HOH A 26 326 50 HOH HOH . C 3 HOH A 27 327 5 HOH HOH . C 3 HOH A 28 328 56 HOH HOH . C 3 HOH A 29 329 14 HOH HOH . C 3 HOH A 30 330 8 HOH HOH . C 3 HOH A 31 331 16 HOH HOH . C 3 HOH A 32 332 45 HOH HOH . C 3 HOH A 33 333 6 HOH HOH . C 3 HOH A 34 334 63 HOH HOH . C 3 HOH A 35 335 21 HOH HOH . C 3 HOH A 36 336 64 HOH HOH . C 3 HOH A 37 337 42 HOH HOH . C 3 HOH A 38 338 69 HOH HOH . C 3 HOH A 39 339 34 HOH HOH . C 3 HOH A 40 340 19 HOH HOH . C 3 HOH A 41 341 65 HOH HOH . C 3 HOH A 42 342 23 HOH HOH . C 3 HOH A 43 343 29 HOH HOH . C 3 HOH A 44 344 4 HOH HOH . C 3 HOH A 45 345 20 HOH HOH . C 3 HOH A 46 346 24 HOH HOH . C 3 HOH A 47 347 7 HOH HOH . C 3 HOH A 48 348 9 HOH HOH . C 3 HOH A 49 349 31 HOH HOH . C 3 HOH A 50 350 27 HOH HOH . C 3 HOH A 51 351 3 HOH HOH . C 3 HOH A 52 352 53 HOH HOH . C 3 HOH A 53 353 18 HOH HOH . C 3 HOH A 54 354 49 HOH HOH . C 3 HOH A 55 355 66 HOH HOH . C 3 HOH A 56 356 60 HOH HOH . C 3 HOH A 57 357 41 HOH HOH . C 3 HOH A 58 358 46 HOH HOH . C 3 HOH A 59 359 33 HOH HOH . C 3 HOH A 60 360 35 HOH HOH . C 3 HOH A 61 361 58 HOH HOH . C 3 HOH A 62 362 51 HOH HOH . C 3 HOH A 63 363 62 HOH HOH . C 3 HOH A 64 364 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 RH6 . . . B 2 4.321 0.268 18.027 1 38.16 ? C13 RH6 201 A 1 HETATM 2 C C15 RH6 . . . B 2 3.22 1.572 16.13 1 33.33 ? C15 RH6 201 A 1 HETATM 3 C C20 RH6 . . . B 2 6.083 -0.911 19.209 1 40.05 ? C20 RH6 201 A 1 HETATM 4 C C21 RH6 . . . B 2 7.096 -1.868 19.281 1 41.21 ? C21 RH6 201 A 1 HETATM 5 C C01 RH6 . . . B 2 7.821 -2.029 20.465 1 40.58 ? C01 RH6 201 A 1 HETATM 6 C C02 RH6 . . . B 2 7.556 -1.229 21.605 1 41.34 ? C02 RH6 201 A 1 HETATM 7 C C04 RH6 . . . B 2 9.059 -2.678 22.957 1 45.79 ? C04 RH6 201 A 1 HETATM 8 C C05 RH6 . . . B 2 8.477 -3.524 24.082 1 41.17 ? C05 RH6 201 A 1 HETATM 9 C C06 RH6 . . . B 2 8.39 -0.5 23.968 1 45.46 ? C06 RH6 201 A 1 HETATM 10 C C07 RH6 . . . B 2 8.379 1.011 23.703 1 40.24 ? C07 RH6 201 A 1 HETATM 11 C C08 RH6 . . . B 2 6.511 -0.282 21.492 1 39.78 ? C08 RH6 201 A 1 HETATM 12 C C09 RH6 . . . B 2 5.792 -0.116 20.308 1 43.37 ? C09 RH6 201 A 1 HETATM 13 C C11 RH6 . . . B 2 4.109 1.067 19.291 1 40.31 ? C11 RH6 201 A 1 HETATM 14 C C14 RH6 . . . B 2 3.565 0.418 16.732 1 33.16 ? C14 RH6 201 A 1 HETATM 15 C C16 RH6 . . . B 2 2.476 1.551 14.868 1 31.71 ? C16 RH6 201 A 1 HETATM 16 C C19 RH6 . . . B 2 5.282 -0.686 18.011 1 39.42 ? C19 RH6 201 A 1 HETATM 17 N N03 RH6 . . . B 2 8.32 -1.426 22.824 1 39.57 ? N03 RH6 201 A 1 HETATM 18 O O10 RH6 . . . B 2 4.806 0.822 20.253 1 45.93 ? O10 RH6 201 A 1 HETATM 19 O O12 RH6 . . . B 2 3.225 1.85 19.104 1 35.97 ? O12 RH6 201 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 19 #