data_8DCA # _model_server_result.job_id SfNKjc2CvMaDnkpbUYhEKw _model_server_result.datetime_utc '2024-11-16 02:18:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dca # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":511}' # _entry.id 8DCA # _exptl.entry_id 8DCA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DCA _cell.length_a 81.161 _cell.length_b 138.864 _cell.length_c 149.877 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DCA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J,K,L,M,N,O,X 1 1 B,D,P,Q,R,S,T,U,V,W,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 N N N ? 6 O N N ? 6 V N N ? 6 W N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC A 502 SUC 2 n C FRU 2 C 2 FRU A 502 SUC 2 n D GLC 1 D 1 GLC B 502 SUC 2 n D FRU 2 D 2 FRU B 502 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C1 GLC . C GLC 1 1_555 C O2 FRU . C FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? covale ? covale2 D C1 GLC . D GLC 1 1_555 D O2 FRU . D FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? metalc ? metalc1 A OD2 ASP 115 A ASP 95 1_555 O CO CO . A CO 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? metalc ? metalc2 A NE2 HIS 223 A HIS 203 1_555 O CO CO . A CO 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc3 A NE2 HIS 254 A HIS 234 1_555 N CO CO . A CO 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc4 A NE2 HIS 349 A HIS 329 1_555 N CO CO . A CO 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc5 E O1B GTP . A GTP 501 1_555 N CO CO . A CO 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc6 E O2A GTP . A GTP 501 1_555 N CO CO . A CO 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc7 E O3G GTP . A GTP 501 1_555 O CO CO . A CO 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc8 E O1B GTP . A GTP 501 1_555 O CO CO . A CO 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc9 N CO CO . A CO 510 1_555 X O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc10 B OD2 ASP 115 B ASP 95 1_555 V CO CO . B CO 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc11 B NE2 HIS 223 B HIS 203 1_555 V CO CO . B CO 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc12 B NE2 HIS 254 B HIS 234 1_555 W CO CO . B CO 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc13 B NE2 HIS 349 B HIS 329 1_555 W CO CO . B CO 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc14 P O1G GTP . B GTP 501 1_555 V CO CO . B CO 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc15 P O1B GTP . B GTP 501 1_555 V CO CO . B CO 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc16 P O1B GTP . B GTP 501 1_555 W CO CO . B CO 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc17 P O2A GTP . B GTP 501 1_555 W CO CO . B CO 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8DCA _atom_sites.fract_transf_matrix[1][1] 0.012321 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007201 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006672 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GTP A 1 501 501 GTP GTP . F 4 GOL A 1 502 503 GOL GOL . G 5 SO4 A 1 503 3 SO4 SO4 . H 5 SO4 A 1 504 4 SO4 SO4 . I 5 SO4 A 1 505 8 SO4 SO4 . J 5 SO4 A 1 506 13 SO4 SO4 . K 5 SO4 A 1 507 14 SO4 SO4 . L 5 SO4 A 1 508 16 SO4 SO4 . M 5 SO4 A 1 509 17 SO4 SO4 . N 6 CO A 1 510 1 CO CO . O 6 CO A 1 511 2 CO CO . P 3 GTP B 1 501 501 GTP GTP . Q 5 SO4 B 1 502 1 SO4 SO4 . R 5 SO4 B 1 503 2 SO4 SO4 . S 5 SO4 B 1 504 12 SO4 SO4 . T 5 SO4 B 1 505 18 SO4 SO4 . U 5 SO4 B 1 506 19 SO4 SO4 . V 6 CO B 1 507 3 CO CO . W 6 CO B 1 508 4 CO CO . X 7 HOH A 1 601 22 HOH HOH . X 7 HOH A 2 602 5 HOH HOH . X 7 HOH A 3 603 2 HOH HOH . X 7 HOH A 4 604 11 HOH HOH . X 7 HOH A 5 605 14 HOH HOH . X 7 HOH A 6 606 25 HOH HOH . Y 7 HOH B 1 601 13 HOH HOH . Y 7 HOH B 2 602 24 HOH HOH . Y 7 HOH B 3 603 4 HOH HOH . Y 7 HOH B 4 604 26 HOH HOH . Y 7 HOH B 5 605 21 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 6 _atom_site.Cartn_x 18.221 _atom_site.Cartn_y 10.944 _atom_site.Cartn_z 35.292 _atom_site.occupancy 0.66 _atom_site.B_iso_or_equiv 70.49 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 511 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 45 _model_server_stats.create_model_time_ms 70 _model_server_stats.query_time_ms 930 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #