data_8DCG # _model_server_result.job_id J9Hg7ZfwynSN5ZmnWfoXLg _model_server_result.datetime_utc '2024-11-16 01:57:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dcg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":504}' # _entry.id 8DCG # _exptl.entry_id 8DCG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 25 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DCG _cell.length_a 143.56 _cell.length_b 143.56 _cell.length_c 80.301 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DCG _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall 'P 4cw' _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,JA 1 1 B,D,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,KA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 V N N ? 4 W N N ? 4 X N N ? 4 Y N N ? 4 Z N N ? 4 AA N N ? 4 BA N N ? 4 CA N N ? 4 DA N N ? 4 EA N N ? 4 FA N N ? 4 GA N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC A 502 SUC 2 n C FRU 2 C 2 FRU A 502 SUC 2 n D GLC 1 D 1 GLC B 502 SUC 2 n D FRU 2 D 2 FRU B 502 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 254 A HIS 234 1_555 E P 5GP . A 5GP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.653 ? covale ? covale2 B NE2 HIS 254 B HIS 234 1_555 U P 5GP . B 5GP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.652 ? covale ? covale3 C C1 GLC . C GLC 1 1_555 C O2 FRU . C FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale4 D C1 GLC . D GLC 1 1_555 D O2 FRU . D FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 378 n n S O2 SO4 doub 379 n n S O3 SO4 sing 380 n n S O4 SO4 sing 381 n n # _atom_sites.entry_id 8DCG _atom_sites.fract_transf_matrix[1][1] 0.006966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006966 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5GP A 1 501 501 5GP 5GP . F 4 SO4 A 1 502 1 SO4 SO4 . G 4 SO4 A 1 503 2 SO4 SO4 . H 4 SO4 A 1 504 3 SO4 SO4 . I 4 SO4 A 1 505 6 SO4 SO4 . J 4 SO4 A 1 506 8 SO4 SO4 . K 4 SO4 A 1 507 9 SO4 SO4 . L 4 SO4 A 1 508 10 SO4 SO4 . M 4 SO4 A 1 509 13 SO4 SO4 . N 4 SO4 A 1 510 16 SO4 SO4 . O 4 SO4 A 1 511 20 SO4 SO4 . P 4 SO4 A 1 512 21 SO4 SO4 . Q 4 SO4 A 1 513 22 SO4 SO4 . R 4 SO4 A 1 514 23 SO4 SO4 . S 5 CL A 1 515 3 CL CL . T 5 CL A 1 516 4 CL CL . U 3 5GP B 1 501 501 5GP 5GP . V 4 SO4 B 1 502 4 SO4 SO4 . W 4 SO4 B 1 503 5 SO4 SO4 . X 4 SO4 B 1 504 7 SO4 SO4 . Y 4 SO4 B 1 505 11 SO4 SO4 . Z 4 SO4 B 1 506 12 SO4 SO4 . AA 4 SO4 B 1 507 14 SO4 SO4 . BA 4 SO4 B 1 508 15 SO4 SO4 . CA 4 SO4 B 1 509 17 SO4 SO4 . DA 4 SO4 B 1 510 18 SO4 SO4 . EA 4 SO4 B 1 511 19 SO4 SO4 . FA 4 SO4 B 1 512 24 SO4 SO4 . GA 4 SO4 B 1 513 25 SO4 SO4 . HA 5 CL B 1 514 1 CL CL . IA 5 CL B 1 515 2 CL CL . JA 6 HOH A 1 601 1 HOH HOH . JA 6 HOH A 2 602 5 HOH HOH . JA 6 HOH A 3 603 3 HOH HOH . JA 6 HOH A 4 604 48 HOH HOH . JA 6 HOH A 5 605 32 HOH HOH . JA 6 HOH A 6 606 70 HOH HOH . JA 6 HOH A 7 607 79 HOH HOH . JA 6 HOH A 8 608 77 HOH HOH . JA 6 HOH A 9 609 64 HOH HOH . JA 6 HOH A 10 610 25 HOH HOH . JA 6 HOH A 11 611 65 HOH HOH . JA 6 HOH A 12 612 47 HOH HOH . JA 6 HOH A 13 613 30 HOH HOH . JA 6 HOH A 14 614 27 HOH HOH . JA 6 HOH A 15 615 26 HOH HOH . JA 6 HOH A 16 616 72 HOH HOH . JA 6 HOH A 17 617 54 HOH HOH . JA 6 HOH A 18 618 53 HOH HOH . JA 6 HOH A 19 619 12 HOH HOH . JA 6 HOH A 20 620 56 HOH HOH . JA 6 HOH A 21 621 23 HOH HOH . JA 6 HOH A 22 622 24 HOH HOH . JA 6 HOH A 23 623 45 HOH HOH . JA 6 HOH A 24 624 39 HOH HOH . JA 6 HOH A 25 625 28 HOH HOH . JA 6 HOH A 26 626 80 HOH HOH . JA 6 HOH A 27 627 2 HOH HOH . JA 6 HOH A 28 628 9 HOH HOH . JA 6 HOH A 29 629 11 HOH HOH . JA 6 HOH A 30 630 52 HOH HOH . JA 6 HOH A 31 631 4 HOH HOH . JA 6 HOH A 32 632 29 HOH HOH . JA 6 HOH A 33 633 69 HOH HOH . JA 6 HOH A 34 634 10 HOH HOH . JA 6 HOH A 35 635 76 HOH HOH . JA 6 HOH A 36 636 18 HOH HOH . JA 6 HOH A 37 637 46 HOH HOH . JA 6 HOH A 38 638 8 HOH HOH . JA 6 HOH A 39 639 67 HOH HOH . JA 6 HOH A 40 640 66 HOH HOH . JA 6 HOH A 41 641 57 HOH HOH . JA 6 HOH A 42 642 68 HOH HOH . JA 6 HOH A 43 643 75 HOH HOH . JA 6 HOH A 44 644 74 HOH HOH . KA 6 HOH B 1 601 73 HOH HOH . KA 6 HOH B 2 602 38 HOH HOH . KA 6 HOH B 3 603 7 HOH HOH . KA 6 HOH B 4 604 34 HOH HOH . KA 6 HOH B 5 605 15 HOH HOH . KA 6 HOH B 6 606 63 HOH HOH . KA 6 HOH B 7 607 20 HOH HOH . KA 6 HOH B 8 608 21 HOH HOH . KA 6 HOH B 9 609 78 HOH HOH . KA 6 HOH B 10 610 16 HOH HOH . KA 6 HOH B 11 611 17 HOH HOH . KA 6 HOH B 12 612 40 HOH HOH . KA 6 HOH B 13 613 13 HOH HOH . KA 6 HOH B 14 614 49 HOH HOH . KA 6 HOH B 15 615 58 HOH HOH . KA 6 HOH B 16 616 62 HOH HOH . KA 6 HOH B 17 617 31 HOH HOH . KA 6 HOH B 18 618 33 HOH HOH . KA 6 HOH B 19 619 60 HOH HOH . KA 6 HOH B 20 620 14 HOH HOH . KA 6 HOH B 21 621 44 HOH HOH . KA 6 HOH B 22 622 42 HOH HOH . KA 6 HOH B 23 623 50 HOH HOH . KA 6 HOH B 24 624 36 HOH HOH . KA 6 HOH B 25 625 37 HOH HOH . KA 6 HOH B 26 626 6 HOH HOH . KA 6 HOH B 27 627 43 HOH HOH . KA 6 HOH B 28 628 19 HOH HOH . KA 6 HOH B 29 629 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . X 4 25.64 -28.345 -20.921 0.99 63.27 ? S SO4 504 B 1 HETATM 2 O O1 SO4 . . . X 4 25.561 -26.973 -21.4 0.73 59.28 ? O1 SO4 504 B 1 HETATM 3 O O2 SO4 . . . X 4 24.558 -29.115 -21.529 0.76 67.14 ? O2 SO4 504 B 1 HETATM 4 O O3 SO4 . . . X 4 25.527 -28.339 -19.46 0.83 66.99 ? O3 SO4 504 B 1 HETATM 5 O O4 SO4 . . . X 4 26.926 -28.948 -21.286 0.87 70.04 ? O4 SO4 504 B 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 5 #