data_8DCO # _model_server_result.job_id o8N6zc8N947x-L4wgQ27Kg _model_server_result.datetime_utc '2024-10-10 18:27:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dco # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 8DCO # _exptl.entry_id 8DCO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DCO _cell.length_a 73.609 _cell.length_b 73.609 _cell.length_c 152.346 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DCO _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8DCO _atom_sites.fract_transf_matrix[1][1] 0.013585 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013585 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDP A 1 201 201 GDP GDP . D 3 CL A 1 202 1 CL CL . E 4 EDO A 1 203 1 EDO EDO . F 2 GDP B 1 201 201 GDP GDP . G 5 HOH A 1 301 237 HOH HOH . G 5 HOH A 2 302 143 HOH HOH . G 5 HOH A 3 303 269 HOH HOH . G 5 HOH A 4 304 243 HOH HOH . G 5 HOH A 5 305 298 HOH HOH . G 5 HOH A 6 306 226 HOH HOH . G 5 HOH A 7 307 292 HOH HOH . G 5 HOH A 8 308 175 HOH HOH . G 5 HOH A 9 309 197 HOH HOH . G 5 HOH A 10 310 20 HOH HOH . G 5 HOH A 11 311 267 HOH HOH . G 5 HOH A 12 312 188 HOH HOH . G 5 HOH A 13 313 184 HOH HOH . G 5 HOH A 14 314 244 HOH HOH . G 5 HOH A 15 315 28 HOH HOH . G 5 HOH A 16 316 83 HOH HOH . G 5 HOH A 17 317 189 HOH HOH . G 5 HOH A 18 318 285 HOH HOH . G 5 HOH A 19 319 27 HOH HOH . G 5 HOH A 20 320 228 HOH HOH . G 5 HOH A 21 321 234 HOH HOH . G 5 HOH A 22 322 276 HOH HOH . G 5 HOH A 23 323 149 HOH HOH . G 5 HOH A 24 324 9 HOH HOH . G 5 HOH A 25 325 120 HOH HOH . G 5 HOH A 26 326 236 HOH HOH . G 5 HOH A 27 327 288 HOH HOH . G 5 HOH A 28 328 110 HOH HOH . G 5 HOH A 29 329 19 HOH HOH . G 5 HOH A 30 330 192 HOH HOH . G 5 HOH A 31 331 93 HOH HOH . G 5 HOH A 32 332 39 HOH HOH . G 5 HOH A 33 333 36 HOH HOH . G 5 HOH A 34 334 69 HOH HOH . G 5 HOH A 35 335 42 HOH HOH . G 5 HOH A 36 336 272 HOH HOH . G 5 HOH A 37 337 173 HOH HOH . G 5 HOH A 38 338 296 HOH HOH . G 5 HOH A 39 339 26 HOH HOH . G 5 HOH A 40 340 150 HOH HOH . G 5 HOH A 41 341 165 HOH HOH . G 5 HOH A 42 342 77 HOH HOH . G 5 HOH A 43 343 136 HOH HOH . G 5 HOH A 44 344 18 HOH HOH . G 5 HOH A 45 345 148 HOH HOH . G 5 HOH A 46 346 159 HOH HOH . G 5 HOH A 47 347 221 HOH HOH . G 5 HOH A 48 348 300 HOH HOH . G 5 HOH A 49 349 114 HOH HOH . G 5 HOH A 50 350 16 HOH HOH . G 5 HOH A 51 351 31 HOH HOH . G 5 HOH A 52 352 238 HOH HOH . G 5 HOH A 53 353 164 HOH HOH . G 5 HOH A 54 354 301 HOH HOH . G 5 HOH A 55 355 60 HOH HOH . G 5 HOH A 56 356 222 HOH HOH . G 5 HOH A 57 357 29 HOH HOH . G 5 HOH A 58 358 89 HOH HOH . G 5 HOH A 59 359 172 HOH HOH . G 5 HOH A 60 360 140 HOH HOH . G 5 HOH A 61 361 232 HOH HOH . G 5 HOH A 62 362 242 HOH HOH . G 5 HOH A 63 363 33 HOH HOH . G 5 HOH A 64 364 146 HOH HOH . G 5 HOH A 65 365 65 HOH HOH . G 5 HOH A 66 366 177 HOH HOH . G 5 HOH A 67 367 95 HOH HOH . G 5 HOH A 68 368 178 HOH HOH . G 5 HOH A 69 369 170 HOH HOH . G 5 HOH A 70 370 37 HOH HOH . G 5 HOH A 71 371 223 HOH HOH . G 5 HOH A 72 372 116 HOH HOH . G 5 HOH A 73 373 82 HOH HOH . G 5 HOH A 74 374 290 HOH HOH . G 5 HOH A 75 375 45 HOH HOH . G 5 HOH A 76 376 3 HOH HOH . G 5 HOH A 77 377 124 HOH HOH . G 5 HOH A 78 378 34 HOH HOH . G 5 HOH A 79 379 52 HOH HOH . G 5 HOH A 80 380 293 HOH HOH . G 5 HOH A 81 381 206 HOH HOH . G 5 HOH A 82 382 51 HOH HOH . G 5 HOH A 83 383 201 HOH HOH . G 5 HOH A 84 384 209 HOH HOH . G 5 HOH A 85 385 299 HOH HOH . G 5 HOH A 86 386 79 HOH HOH . G 5 HOH A 87 387 32 HOH HOH . G 5 HOH A 88 388 161 HOH HOH . G 5 HOH A 89 389 241 HOH HOH . G 5 HOH A 90 390 17 HOH HOH . G 5 HOH A 91 391 138 HOH HOH . G 5 HOH A 92 392 155 HOH HOH . G 5 HOH A 93 393 279 HOH HOH . G 5 HOH A 94 394 23 HOH HOH . G 5 HOH A 95 395 121 HOH HOH . G 5 HOH A 96 396 186 HOH HOH . G 5 HOH A 97 397 235 HOH HOH . G 5 HOH A 98 398 169 HOH HOH . G 5 HOH A 99 399 96 HOH HOH . G 5 HOH A 100 400 70 HOH HOH . G 5 HOH A 101 401 263 HOH HOH . G 5 HOH A 102 402 101 HOH HOH . G 5 HOH A 103 403 262 HOH HOH . G 5 HOH A 104 404 61 HOH HOH . G 5 HOH A 105 405 125 HOH HOH . G 5 HOH A 106 406 50 HOH HOH . G 5 HOH A 107 407 25 HOH HOH . G 5 HOH A 108 408 87 HOH HOH . G 5 HOH A 109 409 190 HOH HOH . G 5 HOH A 110 410 314 HOH HOH . G 5 HOH A 111 411 229 HOH HOH . G 5 HOH A 112 412 297 HOH HOH . G 5 HOH A 113 413 104 HOH HOH . G 5 HOH A 114 414 84 HOH HOH . G 5 HOH A 115 415 230 HOH HOH . G 5 HOH A 116 416 67 HOH HOH . G 5 HOH A 117 417 40 HOH HOH . G 5 HOH A 118 418 270 HOH HOH . G 5 HOH A 119 419 291 HOH HOH . G 5 HOH A 120 420 203 HOH HOH . G 5 HOH A 121 421 162 HOH HOH . G 5 HOH A 122 422 275 HOH HOH . G 5 HOH A 123 423 280 HOH HOH . G 5 HOH A 124 424 181 HOH HOH . G 5 HOH A 125 425 86 HOH HOH . G 5 HOH A 126 426 239 HOH HOH . G 5 HOH A 127 427 225 HOH HOH . G 5 HOH A 128 428 75 HOH HOH . G 5 HOH A 129 429 313 HOH HOH . G 5 HOH A 130 430 205 HOH HOH . G 5 HOH A 131 431 227 HOH HOH . G 5 HOH A 132 432 266 HOH HOH . G 5 HOH A 133 433 274 HOH HOH . G 5 HOH A 134 434 283 HOH HOH . G 5 HOH A 135 435 194 HOH HOH . G 5 HOH A 136 436 207 HOH HOH . G 5 HOH A 137 437 268 HOH HOH . G 5 HOH A 138 438 145 HOH HOH . G 5 HOH A 139 439 224 HOH HOH . G 5 HOH A 140 440 271 HOH HOH . G 5 HOH A 141 441 88 HOH HOH . G 5 HOH A 142 442 282 HOH HOH . G 5 HOH A 143 443 265 HOH HOH . G 5 HOH A 144 444 273 HOH HOH . G 5 HOH A 145 445 260 HOH HOH . G 5 HOH A 146 446 261 HOH HOH . G 5 HOH A 147 447 294 HOH HOH . G 5 HOH A 148 448 316 HOH HOH . G 5 HOH A 149 449 92 HOH HOH . G 5 HOH A 150 450 295 HOH HOH . G 5 HOH A 151 451 119 HOH HOH . G 5 HOH A 152 452 264 HOH HOH . G 5 HOH A 153 453 126 HOH HOH . G 5 HOH A 154 454 231 HOH HOH . G 5 HOH A 155 455 157 HOH HOH . G 5 HOH A 156 456 160 HOH HOH . G 5 HOH A 157 457 278 HOH HOH . G 5 HOH A 158 458 152 HOH HOH . G 5 HOH A 159 459 102 HOH HOH . G 5 HOH A 160 460 220 HOH HOH . G 5 HOH A 161 461 211 HOH HOH . G 5 HOH A 162 462 204 HOH HOH . G 5 HOH A 163 463 212 HOH HOH . G 5 HOH A 164 464 289 HOH HOH . H 5 HOH B 1 301 248 HOH HOH . H 5 HOH B 2 302 81 HOH HOH . H 5 HOH B 3 303 215 HOH HOH . H 5 HOH B 4 304 217 HOH HOH . H 5 HOH B 5 305 315 HOH HOH . H 5 HOH B 6 306 85 HOH HOH . H 5 HOH B 7 307 255 HOH HOH . H 5 HOH B 8 308 253 HOH HOH . H 5 HOH B 9 309 180 HOH HOH . H 5 HOH B 10 310 71 HOH HOH . H 5 HOH B 11 311 2 HOH HOH . H 5 HOH B 12 312 1 HOH HOH . H 5 HOH B 13 313 219 HOH HOH . H 5 HOH B 14 314 310 HOH HOH . H 5 HOH B 15 315 187 HOH HOH . H 5 HOH B 16 316 233 HOH HOH . H 5 HOH B 17 317 49 HOH HOH . H 5 HOH B 18 318 133 HOH HOH . H 5 HOH B 19 319 309 HOH HOH . H 5 HOH B 20 320 73 HOH HOH . H 5 HOH B 21 321 108 HOH HOH . H 5 HOH B 22 322 245 HOH HOH . H 5 HOH B 23 323 44 HOH HOH . H 5 HOH B 24 324 5 HOH HOH . H 5 HOH B 25 325 91 HOH HOH . H 5 HOH B 26 326 144 HOH HOH . H 5 HOH B 27 327 303 HOH HOH . H 5 HOH B 28 328 174 HOH HOH . H 5 HOH B 29 329 130 HOH HOH . H 5 HOH B 30 330 112 HOH HOH . H 5 HOH B 31 331 63 HOH HOH . H 5 HOH B 32 332 58 HOH HOH . H 5 HOH B 33 333 158 HOH HOH . H 5 HOH B 34 334 4 HOH HOH . H 5 HOH B 35 335 216 HOH HOH . H 5 HOH B 36 336 168 HOH HOH . H 5 HOH B 37 337 54 HOH HOH . H 5 HOH B 38 338 48 HOH HOH . H 5 HOH B 39 339 163 HOH HOH . H 5 HOH B 40 340 154 HOH HOH . H 5 HOH B 41 341 254 HOH HOH . H 5 HOH B 42 342 115 HOH HOH . H 5 HOH B 43 343 90 HOH HOH . H 5 HOH B 44 344 196 HOH HOH . H 5 HOH B 45 345 107 HOH HOH . H 5 HOH B 46 346 15 HOH HOH . H 5 HOH B 47 347 312 HOH HOH . H 5 HOH B 48 348 56 HOH HOH . H 5 HOH B 49 349 64 HOH HOH . H 5 HOH B 50 350 302 HOH HOH . H 5 HOH B 51 351 6 HOH HOH . H 5 HOH B 52 352 72 HOH HOH . H 5 HOH B 53 353 43 HOH HOH . H 5 HOH B 54 354 7 HOH HOH . H 5 HOH B 55 355 284 HOH HOH . H 5 HOH B 56 356 111 HOH HOH . H 5 HOH B 57 357 30 HOH HOH . H 5 HOH B 58 358 142 HOH HOH . H 5 HOH B 59 359 78 HOH HOH . H 5 HOH B 60 360 46 HOH HOH . H 5 HOH B 61 361 250 HOH HOH . H 5 HOH B 62 362 304 HOH HOH . H 5 HOH B 63 363 176 HOH HOH . H 5 HOH B 64 364 38 HOH HOH . H 5 HOH B 65 365 94 HOH HOH . H 5 HOH B 66 366 11 HOH HOH . H 5 HOH B 67 367 47 HOH HOH . H 5 HOH B 68 368 257 HOH HOH . H 5 HOH B 69 369 106 HOH HOH . H 5 HOH B 70 370 105 HOH HOH . H 5 HOH B 71 371 259 HOH HOH . H 5 HOH B 72 372 74 HOH HOH . H 5 HOH B 73 373 185 HOH HOH . H 5 HOH B 74 374 103 HOH HOH . H 5 HOH B 75 375 182 HOH HOH . H 5 HOH B 76 376 53 HOH HOH . H 5 HOH B 77 377 305 HOH HOH . H 5 HOH B 78 378 123 HOH HOH . H 5 HOH B 79 379 277 HOH HOH . H 5 HOH B 80 380 247 HOH HOH . H 5 HOH B 81 381 195 HOH HOH . H 5 HOH B 82 382 57 HOH HOH . H 5 HOH B 83 383 55 HOH HOH . H 5 HOH B 84 384 80 HOH HOH . H 5 HOH B 85 385 13 HOH HOH . H 5 HOH B 86 386 8 HOH HOH . H 5 HOH B 87 387 135 HOH HOH . H 5 HOH B 88 388 167 HOH HOH . H 5 HOH B 89 389 76 HOH HOH . H 5 HOH B 90 390 62 HOH HOH . H 5 HOH B 91 391 68 HOH HOH . H 5 HOH B 92 392 24 HOH HOH . H 5 HOH B 93 393 41 HOH HOH . H 5 HOH B 94 394 59 HOH HOH . H 5 HOH B 95 395 218 HOH HOH . H 5 HOH B 96 396 153 HOH HOH . H 5 HOH B 97 397 12 HOH HOH . H 5 HOH B 98 398 287 HOH HOH . H 5 HOH B 99 399 214 HOH HOH . H 5 HOH B 100 400 306 HOH HOH . H 5 HOH B 101 401 127 HOH HOH . H 5 HOH B 102 402 246 HOH HOH . H 5 HOH B 103 403 256 HOH HOH . H 5 HOH B 104 404 281 HOH HOH . H 5 HOH B 105 405 286 HOH HOH . H 5 HOH B 106 406 252 HOH HOH . H 5 HOH B 107 407 251 HOH HOH . H 5 HOH B 108 408 208 HOH HOH . H 5 HOH B 109 409 156 HOH HOH . H 5 HOH B 110 410 166 HOH HOH . H 5 HOH B 111 411 137 HOH HOH . H 5 HOH B 112 412 193 HOH HOH . H 5 HOH B 113 413 258 HOH HOH . H 5 HOH B 114 414 210 HOH HOH . H 5 HOH B 115 415 249 HOH HOH . H 5 HOH B 116 416 307 HOH HOH . H 5 HOH B 117 417 308 HOH HOH . H 5 HOH B 118 418 179 HOH HOH . H 5 HOH B 119 419 311 HOH HOH . H 5 HOH B 120 420 213 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 42.685 -26.971 -25.373 1 53.09 ? C1 EDO 203 A 1 HETATM 2 O O1 EDO . . . E 4 42.637 -25.565 -25.426 1 50.11 ? O1 EDO 203 A 1 HETATM 3 C C2 EDO . . . E 4 41.828 -27.493 -24.289 1 51.17 ? C2 EDO 203 A 1 HETATM 4 O O2 EDO . . . E 4 40.478 -27.782 -24.667 1 46.97 ? O2 EDO 203 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #