data_8DCT # _model_server_result.job_id wrJeevJjeLsdqGcWZferJg _model_server_result.datetime_utc '2025-01-11 10:04:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dct # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8DCT # _exptl.entry_id 8DCT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DCT _cell.length_a 79.23 _cell.length_b 79.23 _cell.length_c 37.52 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DCT _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc1 A O SER 60 A SER 60 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc2 A O CYS 64 A CYS 64 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc3 A OG SER 72 A SER 72 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc4 A O ARG 73 A ARG 73 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc5 B NA NA . A NA 201 1_555 J O HOH . A HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc6 B NA NA . A NA 201 1_555 J O HOH . A HOH 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8DCT _atom_sites.fract_transf_matrix[1][1] 0.012621 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026652 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 201 201 NA NA . C 3 CL A 1 202 202 CL CL . D 3 CL A 1 203 203 CL CL . E 3 CL A 1 204 204 CL CL . F 3 CL A 1 205 205 CL CL . G 3 CL A 1 206 206 CL CL . H 4 BEN A 1 207 207 BEN BEN . I 5 NDG A 1 208 208 NDG NDG . J 6 HOH A 1 301 504 HOH HOH . J 6 HOH A 2 302 520 HOH HOH . J 6 HOH A 3 303 508 HOH HOH . J 6 HOH A 4 304 511 HOH HOH . J 6 HOH A 5 305 357 HOH HOH . J 6 HOH A 6 306 502 HOH HOH . J 6 HOH A 7 307 499 HOH HOH . J 6 HOH A 8 308 518 HOH HOH . J 6 HOH A 9 309 383 HOH HOH . J 6 HOH A 10 310 490 HOH HOH . J 6 HOH A 11 311 342 HOH HOH . J 6 HOH A 12 312 443 HOH HOH . J 6 HOH A 13 313 457 HOH HOH . J 6 HOH A 14 314 446 HOH HOH . J 6 HOH A 15 315 406 HOH HOH . J 6 HOH A 16 316 389 HOH HOH . J 6 HOH A 17 317 460 HOH HOH . J 6 HOH A 18 318 387 HOH HOH . J 6 HOH A 19 319 516 HOH HOH . J 6 HOH A 20 320 507 HOH HOH . J 6 HOH A 21 321 341 HOH HOH . J 6 HOH A 22 322 463 HOH HOH . J 6 HOH A 23 323 316 HOH HOH . J 6 HOH A 24 324 363 HOH HOH . J 6 HOH A 25 325 482 HOH HOH . J 6 HOH A 26 326 500 HOH HOH . J 6 HOH A 27 327 354 HOH HOH . J 6 HOH A 28 328 328 HOH HOH . J 6 HOH A 29 329 305 HOH HOH . J 6 HOH A 30 330 394 HOH HOH . J 6 HOH A 31 331 464 HOH HOH . J 6 HOH A 32 332 381 HOH HOH . J 6 HOH A 33 333 309 HOH HOH . J 6 HOH A 34 334 331 HOH HOH . J 6 HOH A 35 335 339 HOH HOH . J 6 HOH A 36 336 380 HOH HOH . J 6 HOH A 37 337 417 HOH HOH . J 6 HOH A 38 338 378 HOH HOH . J 6 HOH A 39 339 317 HOH HOH . J 6 HOH A 40 340 311 HOH HOH . J 6 HOH A 41 341 353 HOH HOH . J 6 HOH A 42 342 313 HOH HOH . J 6 HOH A 43 343 322 HOH HOH . J 6 HOH A 44 344 498 HOH HOH . J 6 HOH A 45 345 399 HOH HOH . J 6 HOH A 46 346 453 HOH HOH . J 6 HOH A 47 347 514 HOH HOH . J 6 HOH A 48 348 401 HOH HOH . J 6 HOH A 49 349 495 HOH HOH . J 6 HOH A 50 350 355 HOH HOH . J 6 HOH A 51 351 477 HOH HOH . J 6 HOH A 52 352 400 HOH HOH . J 6 HOH A 53 353 479 HOH HOH . J 6 HOH A 54 354 304 HOH HOH . J 6 HOH A 55 355 373 HOH HOH . J 6 HOH A 56 356 345 HOH HOH . J 6 HOH A 57 357 468 HOH HOH . J 6 HOH A 58 358 368 HOH HOH . J 6 HOH A 59 359 416 HOH HOH . J 6 HOH A 60 360 484 HOH HOH . J 6 HOH A 61 361 435 HOH HOH . J 6 HOH A 62 362 494 HOH HOH . J 6 HOH A 63 363 358 HOH HOH . J 6 HOH A 64 364 359 HOH HOH . J 6 HOH A 65 365 333 HOH HOH . J 6 HOH A 66 366 321 HOH HOH . J 6 HOH A 67 367 360 HOH HOH . J 6 HOH A 68 368 306 HOH HOH . J 6 HOH A 69 369 415 HOH HOH . J 6 HOH A 70 370 329 HOH HOH . J 6 HOH A 71 371 379 HOH HOH . J 6 HOH A 72 372 422 HOH HOH . J 6 HOH A 73 373 334 HOH HOH . J 6 HOH A 74 374 302 HOH HOH . J 6 HOH A 75 375 314 HOH HOH . J 6 HOH A 76 376 403 HOH HOH . J 6 HOH A 77 377 346 HOH HOH . J 6 HOH A 78 378 434 HOH HOH . J 6 HOH A 79 379 409 HOH HOH . J 6 HOH A 80 380 503 HOH HOH . J 6 HOH A 81 381 407 HOH HOH . J 6 HOH A 82 382 426 HOH HOH . J 6 HOH A 83 383 352 HOH HOH . J 6 HOH A 84 384 338 HOH HOH . J 6 HOH A 85 385 485 HOH HOH . J 6 HOH A 86 386 393 HOH HOH . J 6 HOH A 87 387 361 HOH HOH . J 6 HOH A 88 388 488 HOH HOH . J 6 HOH A 89 389 436 HOH HOH . J 6 HOH A 90 390 395 HOH HOH . J 6 HOH A 91 391 509 HOH HOH . J 6 HOH A 92 392 492 HOH HOH . J 6 HOH A 93 393 377 HOH HOH . J 6 HOH A 94 394 447 HOH HOH . J 6 HOH A 95 395 324 HOH HOH . J 6 HOH A 96 396 374 HOH HOH . J 6 HOH A 97 397 323 HOH HOH . J 6 HOH A 98 398 493 HOH HOH . J 6 HOH A 99 399 303 HOH HOH . J 6 HOH A 100 400 336 HOH HOH . J 6 HOH A 101 401 440 HOH HOH . J 6 HOH A 102 402 326 HOH HOH . J 6 HOH A 103 403 438 HOH HOH . J 6 HOH A 104 404 325 HOH HOH . J 6 HOH A 105 405 465 HOH HOH . J 6 HOH A 106 406 382 HOH HOH . J 6 HOH A 107 407 348 HOH HOH . J 6 HOH A 108 408 335 HOH HOH . J 6 HOH A 109 409 471 HOH HOH . J 6 HOH A 110 410 320 HOH HOH . J 6 HOH A 111 411 307 HOH HOH . J 6 HOH A 112 412 356 HOH HOH . J 6 HOH A 113 413 432 HOH HOH . J 6 HOH A 114 414 472 HOH HOH . J 6 HOH A 115 415 448 HOH HOH . J 6 HOH A 116 416 308 HOH HOH . J 6 HOH A 117 417 505 HOH HOH . J 6 HOH A 118 418 319 HOH HOH . J 6 HOH A 119 419 424 HOH HOH . J 6 HOH A 120 420 469 HOH HOH . J 6 HOH A 121 421 369 HOH HOH . J 6 HOH A 122 422 452 HOH HOH . J 6 HOH A 123 423 301 HOH HOH . J 6 HOH A 124 424 337 HOH HOH . J 6 HOH A 125 425 421 HOH HOH . J 6 HOH A 126 426 385 HOH HOH . J 6 HOH A 127 427 411 HOH HOH . J 6 HOH A 128 428 376 HOH HOH . J 6 HOH A 129 429 473 HOH HOH . J 6 HOH A 130 430 445 HOH HOH . J 6 HOH A 131 431 428 HOH HOH . J 6 HOH A 132 432 433 HOH HOH . J 6 HOH A 133 433 497 HOH HOH . J 6 HOH A 134 434 458 HOH HOH . J 6 HOH A 135 435 459 HOH HOH . J 6 HOH A 136 436 310 HOH HOH . J 6 HOH A 137 437 519 HOH HOH . J 6 HOH A 138 438 410 HOH HOH . J 6 HOH A 139 439 455 HOH HOH . J 6 HOH A 140 440 327 HOH HOH . J 6 HOH A 141 441 390 HOH HOH . J 6 HOH A 142 442 429 HOH HOH . J 6 HOH A 143 443 491 HOH HOH . J 6 HOH A 144 444 413 HOH HOH . J 6 HOH A 145 445 470 HOH HOH . J 6 HOH A 146 446 404 HOH HOH . J 6 HOH A 147 447 386 HOH HOH . J 6 HOH A 148 448 483 HOH HOH . J 6 HOH A 149 449 315 HOH HOH . J 6 HOH A 150 450 442 HOH HOH . J 6 HOH A 151 451 466 HOH HOH . J 6 HOH A 152 452 371 HOH HOH . J 6 HOH A 153 453 476 HOH HOH . J 6 HOH A 154 454 396 HOH HOH . J 6 HOH A 155 455 430 HOH HOH . J 6 HOH A 156 456 318 HOH HOH . J 6 HOH A 157 457 351 HOH HOH . J 6 HOH A 158 458 388 HOH HOH . J 6 HOH A 159 459 349 HOH HOH . J 6 HOH A 160 460 489 HOH HOH . J 6 HOH A 161 461 450 HOH HOH . J 6 HOH A 162 462 481 HOH HOH . J 6 HOH A 163 463 474 HOH HOH . J 6 HOH A 164 464 408 HOH HOH . J 6 HOH A 165 465 384 HOH HOH . J 6 HOH A 166 466 420 HOH HOH . J 6 HOH A 167 467 414 HOH HOH . J 6 HOH A 168 468 392 HOH HOH . J 6 HOH A 169 469 362 HOH HOH . J 6 HOH A 170 470 347 HOH HOH . J 6 HOH A 171 471 412 HOH HOH . J 6 HOH A 172 472 350 HOH HOH . J 6 HOH A 173 473 372 HOH HOH . J 6 HOH A 174 474 437 HOH HOH . J 6 HOH A 175 475 449 HOH HOH . J 6 HOH A 176 476 425 HOH HOH . J 6 HOH A 177 477 478 HOH HOH . J 6 HOH A 178 478 391 HOH HOH . J 6 HOH A 179 479 439 HOH HOH . J 6 HOH A 180 480 431 HOH HOH . J 6 HOH A 181 481 451 HOH HOH . J 6 HOH A 182 482 332 HOH HOH . J 6 HOH A 183 483 343 HOH HOH . J 6 HOH A 184 484 398 HOH HOH . J 6 HOH A 185 485 397 HOH HOH . J 6 HOH A 186 486 480 HOH HOH . J 6 HOH A 187 487 475 HOH HOH . J 6 HOH A 188 488 496 HOH HOH . J 6 HOH A 189 489 454 HOH HOH . J 6 HOH A 190 490 444 HOH HOH . J 6 HOH A 191 491 340 HOH HOH . J 6 HOH A 192 492 427 HOH HOH . J 6 HOH A 193 493 501 HOH HOH . J 6 HOH A 194 494 521 HOH HOH . J 6 HOH A 195 495 506 HOH HOH . J 6 HOH A 196 496 510 HOH HOH . J 6 HOH A 197 497 330 HOH HOH . J 6 HOH A 198 498 441 HOH HOH . J 6 HOH A 199 499 402 HOH HOH . J 6 HOH A 200 500 418 HOH HOH . J 6 HOH A 201 501 461 HOH HOH . J 6 HOH A 202 502 486 HOH HOH . J 6 HOH A 203 503 423 HOH HOH . J 6 HOH A 204 504 370 HOH HOH . J 6 HOH A 205 505 462 HOH HOH . J 6 HOH A 206 506 487 HOH HOH . J 6 HOH A 207 507 375 HOH HOH . J 6 HOH A 208 508 364 HOH HOH . J 6 HOH A 209 509 517 HOH HOH . J 6 HOH A 210 510 405 HOH HOH . J 6 HOH A 211 511 467 HOH HOH . J 6 HOH A 212 512 456 HOH HOH . J 6 HOH A 213 513 515 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -7.946 _atom_site.Cartn_y -14.46 _atom_site.Cartn_z 12.649 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.12 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #