data_8DCW # _model_server_result.job_id iTkcJCWgvzN9UZ3qp2XSgw _model_server_result.datetime_utc '2024-10-19 12:22:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dcw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":207}' # _entry.id 8DCW # _exptl.entry_id 8DCW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DCW _cell.length_a 78.78 _cell.length_b 78.78 _cell.length_c 37.57 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 A O SER 60 A SER 60 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc2 A O CYS 64 A CYS 64 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc3 A OG SER 72 A SER 72 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc4 A O ARG 73 A ARG 73 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc5 B NA NA . A NA 201 1_555 J O HOH . A HOH 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc6 B NA NA . A NA 201 1_555 J O HOH . A HOH 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEN doub 70 n y C1 C6 BEN sing 71 n y C1 C BEN sing 72 n n C2 C3 BEN sing 73 n y C2 H2 BEN sing 74 n n C3 C4 BEN doub 75 n y C3 H3 BEN sing 76 n n C4 C5 BEN sing 77 n y C4 H4 BEN sing 78 n n C5 C6 BEN doub 79 n y C5 H5 BEN sing 80 n n C6 H6 BEN sing 81 n n C N1 BEN doub 82 e n C N2 BEN sing 83 n n N1 HN1 BEN sing 84 n n N2 HN21 BEN sing 85 n n N2 HN22 BEN sing 86 n n # _atom_sites.entry_id 8DCW _atom_sites.fract_transf_matrix[1][1] 0.012694 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012694 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 201 201 NA NA . C 3 CL A 1 202 202 CL CL . D 3 CL A 1 203 203 CL CL . E 3 CL A 1 204 204 CL CL . F 3 CL A 1 205 205 CL CL . G 3 CL A 1 206 206 CL CL . H 4 BEN A 1 207 207 BEN BEN . I 5 NDG A 1 208 208 NDG NDG . J 6 HOH A 1 301 511 HOH HOH . J 6 HOH A 2 302 504 HOH HOH . J 6 HOH A 3 303 400 HOH HOH . J 6 HOH A 4 304 502 HOH HOH . J 6 HOH A 5 305 509 HOH HOH . J 6 HOH A 6 306 422 HOH HOH . J 6 HOH A 7 307 434 HOH HOH . J 6 HOH A 8 308 342 HOH HOH . J 6 HOH A 9 309 458 HOH HOH . J 6 HOH A 10 310 514 HOH HOH . J 6 HOH A 11 311 414 HOH HOH . J 6 HOH A 12 312 401 HOH HOH . J 6 HOH A 13 313 416 HOH HOH . J 6 HOH A 14 314 490 HOH HOH . J 6 HOH A 15 315 309 HOH HOH . J 6 HOH A 16 316 394 HOH HOH . J 6 HOH A 17 317 498 HOH HOH . J 6 HOH A 18 318 427 HOH HOH . J 6 HOH A 19 319 435 HOH HOH . J 6 HOH A 20 320 424 HOH HOH . J 6 HOH A 21 321 517 HOH HOH . J 6 HOH A 22 322 333 HOH HOH . J 6 HOH A 23 323 346 HOH HOH . J 6 HOH A 24 324 412 HOH HOH . J 6 HOH A 25 325 360 HOH HOH . J 6 HOH A 26 326 373 HOH HOH . J 6 HOH A 27 327 464 HOH HOH . J 6 HOH A 28 328 446 HOH HOH . J 6 HOH A 29 329 507 HOH HOH . J 6 HOH A 30 330 453 HOH HOH . J 6 HOH A 31 331 380 HOH HOH . J 6 HOH A 32 332 493 HOH HOH . J 6 HOH A 33 333 500 HOH HOH . J 6 HOH A 34 334 353 HOH HOH . J 6 HOH A 35 335 447 HOH HOH . J 6 HOH A 36 336 352 HOH HOH . J 6 HOH A 37 337 316 HOH HOH . J 6 HOH A 38 338 384 HOH HOH . J 6 HOH A 39 339 322 HOH HOH . J 6 HOH A 40 340 377 HOH HOH . J 6 HOH A 41 341 499 HOH HOH . J 6 HOH A 42 342 415 HOH HOH . J 6 HOH A 43 343 339 HOH HOH . J 6 HOH A 44 344 503 HOH HOH . J 6 HOH A 45 345 501 HOH HOH . J 6 HOH A 46 346 399 HOH HOH . J 6 HOH A 47 347 363 HOH HOH . J 6 HOH A 48 348 468 HOH HOH . J 6 HOH A 49 349 491 HOH HOH . J 6 HOH A 50 350 324 HOH HOH . J 6 HOH A 51 351 408 HOH HOH . J 6 HOH A 52 352 395 HOH HOH . J 6 HOH A 53 353 362 HOH HOH . J 6 HOH A 54 354 304 HOH HOH . J 6 HOH A 55 355 466 HOH HOH . J 6 HOH A 56 356 341 HOH HOH . J 6 HOH A 57 357 452 HOH HOH . J 6 HOH A 58 358 331 HOH HOH . J 6 HOH A 59 359 335 HOH HOH . J 6 HOH A 60 360 473 HOH HOH . J 6 HOH A 61 361 402 HOH HOH . J 6 HOH A 62 362 479 HOH HOH . J 6 HOH A 63 363 438 HOH HOH . J 6 HOH A 64 364 508 HOH HOH . J 6 HOH A 65 365 495 HOH HOH . J 6 HOH A 66 366 387 HOH HOH . J 6 HOH A 67 367 321 HOH HOH . J 6 HOH A 68 368 355 HOH HOH . J 6 HOH A 69 369 506 HOH HOH . J 6 HOH A 70 370 305 HOH HOH . J 6 HOH A 71 371 325 HOH HOH . J 6 HOH A 72 372 345 HOH HOH . J 6 HOH A 73 373 381 HOH HOH . J 6 HOH A 74 374 302 HOH HOH . J 6 HOH A 75 375 518 HOH HOH . J 6 HOH A 76 376 338 HOH HOH . J 6 HOH A 77 377 317 HOH HOH . J 6 HOH A 78 378 358 HOH HOH . J 6 HOH A 79 379 391 HOH HOH . J 6 HOH A 80 380 433 HOH HOH . J 6 HOH A 81 381 463 HOH HOH . J 6 HOH A 82 382 326 HOH HOH . J 6 HOH A 83 383 406 HOH HOH . J 6 HOH A 84 384 348 HOH HOH . J 6 HOH A 85 385 392 HOH HOH . J 6 HOH A 86 386 409 HOH HOH . J 6 HOH A 87 387 334 HOH HOH . J 6 HOH A 88 388 301 HOH HOH . J 6 HOH A 89 389 311 HOH HOH . J 6 HOH A 90 390 439 HOH HOH . J 6 HOH A 91 391 306 HOH HOH . J 6 HOH A 92 392 460 HOH HOH . J 6 HOH A 93 393 429 HOH HOH . J 6 HOH A 94 394 340 HOH HOH . J 6 HOH A 95 395 410 HOH HOH . J 6 HOH A 96 396 426 HOH HOH . J 6 HOH A 97 397 313 HOH HOH . J 6 HOH A 98 398 337 HOH HOH . J 6 HOH A 99 399 383 HOH HOH . J 6 HOH A 100 400 368 HOH HOH . J 6 HOH A 101 401 398 HOH HOH . J 6 HOH A 102 402 471 HOH HOH . J 6 HOH A 103 403 390 HOH HOH . J 6 HOH A 104 404 307 HOH HOH . J 6 HOH A 105 405 329 HOH HOH . J 6 HOH A 106 406 385 HOH HOH . J 6 HOH A 107 407 308 HOH HOH . J 6 HOH A 108 408 310 HOH HOH . J 6 HOH A 109 409 328 HOH HOH . J 6 HOH A 110 410 319 HOH HOH . J 6 HOH A 111 411 359 HOH HOH . J 6 HOH A 112 412 318 HOH HOH . J 6 HOH A 113 413 432 HOH HOH . J 6 HOH A 114 414 315 HOH HOH . J 6 HOH A 115 415 314 HOH HOH . J 6 HOH A 116 416 474 HOH HOH . J 6 HOH A 117 417 354 HOH HOH . J 6 HOH A 118 418 382 HOH HOH . J 6 HOH A 119 419 327 HOH HOH . J 6 HOH A 120 420 397 HOH HOH . J 6 HOH A 121 421 361 HOH HOH . J 6 HOH A 122 422 484 HOH HOH . J 6 HOH A 123 423 378 HOH HOH . J 6 HOH A 124 424 320 HOH HOH . J 6 HOH A 125 425 407 HOH HOH . J 6 HOH A 126 426 386 HOH HOH . J 6 HOH A 127 427 516 HOH HOH . J 6 HOH A 128 428 356 HOH HOH . J 6 HOH A 129 429 465 HOH HOH . J 6 HOH A 130 430 496 HOH HOH . J 6 HOH A 131 431 303 HOH HOH . J 6 HOH A 132 432 396 HOH HOH . J 6 HOH A 133 433 411 HOH HOH . J 6 HOH A 134 434 379 HOH HOH . J 6 HOH A 135 435 443 HOH HOH . J 6 HOH A 136 436 336 HOH HOH . J 6 HOH A 137 437 371 HOH HOH . J 6 HOH A 138 438 442 HOH HOH . J 6 HOH A 139 439 445 HOH HOH . J 6 HOH A 140 440 497 HOH HOH . J 6 HOH A 141 441 431 HOH HOH . J 6 HOH A 142 442 470 HOH HOH . J 6 HOH A 143 443 350 HOH HOH . J 6 HOH A 144 444 436 HOH HOH . J 6 HOH A 145 445 455 HOH HOH . J 6 HOH A 146 446 454 HOH HOH . J 6 HOH A 147 447 489 HOH HOH . J 6 HOH A 148 448 347 HOH HOH . J 6 HOH A 149 449 475 HOH HOH . J 6 HOH A 150 450 323 HOH HOH . J 6 HOH A 151 451 478 HOH HOH . J 6 HOH A 152 452 357 HOH HOH . J 6 HOH A 153 453 450 HOH HOH . J 6 HOH A 154 454 413 HOH HOH . J 6 HOH A 155 455 351 HOH HOH . J 6 HOH A 156 456 393 HOH HOH . J 6 HOH A 157 457 430 HOH HOH . J 6 HOH A 158 458 332 HOH HOH . J 6 HOH A 159 459 420 HOH HOH . J 6 HOH A 160 460 505 HOH HOH . J 6 HOH A 161 461 440 HOH HOH . J 6 HOH A 162 462 482 HOH HOH . J 6 HOH A 163 463 488 HOH HOH . J 6 HOH A 164 464 485 HOH HOH . J 6 HOH A 165 465 492 HOH HOH . J 6 HOH A 166 466 477 HOH HOH . J 6 HOH A 167 467 459 HOH HOH . J 6 HOH A 168 468 349 HOH HOH . J 6 HOH A 169 469 437 HOH HOH . J 6 HOH A 170 470 404 HOH HOH . J 6 HOH A 171 471 448 HOH HOH . J 6 HOH A 172 472 388 HOH HOH . J 6 HOH A 173 473 417 HOH HOH . J 6 HOH A 174 474 483 HOH HOH . J 6 HOH A 175 475 343 HOH HOH . J 6 HOH A 176 476 449 HOH HOH . J 6 HOH A 177 477 476 HOH HOH . J 6 HOH A 178 478 369 HOH HOH . J 6 HOH A 179 479 428 HOH HOH . J 6 HOH A 180 480 481 HOH HOH . J 6 HOH A 181 481 480 HOH HOH . J 6 HOH A 182 482 403 HOH HOH . J 6 HOH A 183 483 372 HOH HOH . J 6 HOH A 184 484 472 HOH HOH . J 6 HOH A 185 485 389 HOH HOH . J 6 HOH A 186 486 444 HOH HOH . J 6 HOH A 187 487 494 HOH HOH . J 6 HOH A 188 488 423 HOH HOH . J 6 HOH A 189 489 469 HOH HOH . J 6 HOH A 190 490 421 HOH HOH . J 6 HOH A 191 491 457 HOH HOH . J 6 HOH A 192 492 418 HOH HOH . J 6 HOH A 193 493 425 HOH HOH . J 6 HOH A 194 494 461 HOH HOH . J 6 HOH A 195 495 376 HOH HOH . J 6 HOH A 196 496 441 HOH HOH . J 6 HOH A 197 497 330 HOH HOH . J 6 HOH A 198 498 510 HOH HOH . J 6 HOH A 199 499 374 HOH HOH . J 6 HOH A 200 500 486 HOH HOH . J 6 HOH A 201 501 467 HOH HOH . J 6 HOH A 202 502 375 HOH HOH . J 6 HOH A 203 503 370 HOH HOH . J 6 HOH A 204 504 462 HOH HOH . J 6 HOH A 205 505 364 HOH HOH . J 6 HOH A 206 506 451 HOH HOH . J 6 HOH A 207 507 456 HOH HOH . J 6 HOH A 208 508 405 HOH HOH . J 6 HOH A 209 509 487 HOH HOH . J 6 HOH A 210 510 515 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . H 4 -8.099 -23.733 -9.421 0.95 18.42 ? C1 BEN 207 A 1 HETATM 2 C C2 BEN . . . H 4 -9.053 -22.784 -9.774 0.95 19.78 ? C2 BEN 207 A 1 HETATM 3 C C3 BEN . . . H 4 -9.617 -21.968 -8.803 0.95 20.51 ? C3 BEN 207 A 1 HETATM 4 C C4 BEN . . . H 4 -9.238 -22.098 -7.481 0.95 19.59 ? C4 BEN 207 A 1 HETATM 5 C C5 BEN . . . H 4 -8.303 -23.046 -7.122 0.95 19.16 ? C5 BEN 207 A 1 HETATM 6 C C6 BEN . . . H 4 -7.723 -23.849 -8.087 0.95 19.37 ? C6 BEN 207 A 1 HETATM 7 C C BEN . . . H 4 -7.471 -24.601 -10.448 0.95 18.2 ? C BEN 207 A 1 HETATM 8 N N1 BEN . . . H 4 -8.096 -25.045 -11.485 0.95 17.55 ? N1 BEN 207 A 1 HETATM 9 N N2 BEN . . . H 4 -6.171 -24.941 -10.265 0.95 18.15 ? N2 BEN 207 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #