data_8DD1 # _model_server_result.job_id sjHTLyznJKcLYcN00JyczQ _model_server_result.datetime_utc '2024-11-13 22:39:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dd1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8DD1 # _exptl.entry_id 8DD1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 485.551 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.9 _cell.angle_gamma 90 _cell.entry_id 8DD1 _cell.length_a 113.899 _cell.length_b 53.55 _cell.length_c 45.321 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DD1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C21 _struct_conn.ptnr2_label_comp_id K36 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id K36 _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.783 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H31 N3 O8 S' _chem_comp.formula_weight 485.551 _chem_comp.id K36 _chem_comp.mon_nstd_flag . _chem_comp.name '(1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms GC376 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C21 K36 sing 173 n n C21 C20 K36 sing 174 n n C20 C24 K36 sing 175 n n C20 N19 K36 sing 176 n n C24 C25 K36 sing 177 n n C26 C27 K36 sing 178 n n C26 C25 K36 sing 179 n n C27 N28 K36 sing 180 n n O18 C17 K36 doub 181 n n N19 C17 K36 sing 182 n n C25 C29 K36 sing 183 n n C29 N28 K36 sing 184 n n C29 O30 K36 doub 185 n n C17 C12 K36 sing 186 n n C13 C12 K36 sing 187 n n C13 C14 K36 sing 188 n n C12 N11 K36 sing 189 n n C15 C14 K36 sing 190 n n C14 C16 K36 sing 191 n n N11 C9 K36 sing 192 n n O10 C9 K36 doub 193 n n C9 O8 K36 sing 194 n n O8 C7 K36 sing 195 n n C7 H1 K36 sing 196 n n C7 H2 K36 sing 197 n n N11 H4 K36 sing 198 n n C12 H5 K36 sing 199 n n C13 H6 K36 sing 200 n n C13 H7 K36 sing 201 n n C14 H8 K36 sing 202 n n C15 H9 K36 sing 203 n n C15 H10 K36 sing 204 n n C15 H11 K36 sing 205 n n C16 H12 K36 sing 206 n n C16 H13 K36 sing 207 n n C16 H14 K36 sing 208 n n N19 H15 K36 sing 209 n n C20 H16 K36 sing 210 n n C21 H17 K36 sing 211 n n O22 H19 K36 sing 212 n n C24 H20 K36 sing 213 n n C24 H21 K36 sing 214 n n C25 H22 K36 sing 215 n n C26 H23 K36 sing 216 n n C26 H24 K36 sing 217 n n C27 H25 K36 sing 218 n n C27 H26 K36 sing 219 n n N28 H27 K36 sing 220 n n C7 C1 K36 sing 221 n n C1 C2 K36 sing 222 n y C2 C3 K36 doub 223 n y C3 C4 K36 sing 224 n y C4 C5 K36 doub 225 n y C5 C6 K36 sing 226 n y C6 C1 K36 doub 227 n y C21 S1 K36 sing 228 n n S1 O1 K36 doub 229 n n S1 O2 K36 doub 230 n n S1 O3 K36 sing 231 n n C2 H3 K36 sing 232 n n C3 H18 K36 sing 233 n n C4 H28 K36 sing 234 n n C5 H29 K36 sing 235 n n C6 H30 K36 sing 236 n n O3 H31 K36 sing 237 n n # _atom_sites.entry_id 8DD1 _atom_sites.fract_transf_matrix[1][1] 0.00878 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00185 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018674 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022549 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K36 A 1 401 401 K36 LIG . C 3 HOH A 1 501 6 HOH HOH . C 3 HOH A 2 502 209 HOH HOH . C 3 HOH A 3 503 4 HOH HOH . C 3 HOH A 4 504 202 HOH HOH . C 3 HOH A 5 505 215 HOH HOH . C 3 HOH A 6 506 73 HOH HOH . C 3 HOH A 7 507 102 HOH HOH . C 3 HOH A 8 508 97 HOH HOH . C 3 HOH A 9 509 104 HOH HOH . C 3 HOH A 10 510 69 HOH HOH . C 3 HOH A 11 511 66 HOH HOH . C 3 HOH A 12 512 150 HOH HOH . C 3 HOH A 13 513 70 HOH HOH . C 3 HOH A 14 514 99 HOH HOH . C 3 HOH A 15 515 40 HOH HOH . C 3 HOH A 16 516 14 HOH HOH . C 3 HOH A 17 517 42 HOH HOH . C 3 HOH A 18 518 43 HOH HOH . C 3 HOH A 19 519 201 HOH HOH . C 3 HOH A 20 520 3 HOH HOH . C 3 HOH A 21 521 6 HOH HOH . C 3 HOH A 22 522 19 HOH HOH . C 3 HOH A 23 523 4 HOH HOH . C 3 HOH A 24 524 20 HOH HOH . C 3 HOH A 25 525 57 HOH HOH . C 3 HOH A 26 526 64 HOH HOH . C 3 HOH A 27 527 67 HOH HOH . C 3 HOH A 28 528 59 HOH HOH . C 3 HOH A 29 529 71 HOH HOH . C 3 HOH A 30 530 63 HOH HOH . C 3 HOH A 31 531 124 HOH HOH . C 3 HOH A 32 532 36 HOH HOH . C 3 HOH A 33 533 67 HOH HOH . C 3 HOH A 34 534 105 HOH HOH . C 3 HOH A 35 535 196 HOH HOH . C 3 HOH A 36 536 29 HOH HOH . C 3 HOH A 37 537 103 HOH HOH . C 3 HOH A 38 538 18 HOH HOH . C 3 HOH A 39 539 1 HOH HOH . C 3 HOH A 40 540 111 HOH HOH . C 3 HOH A 41 541 39 HOH HOH . C 3 HOH A 42 542 2 HOH HOH . C 3 HOH A 43 543 195 HOH HOH . C 3 HOH A 44 544 32 HOH HOH . C 3 HOH A 45 545 26 HOH HOH . C 3 HOH A 46 546 1 HOH HOH . C 3 HOH A 47 547 112 HOH HOH . C 3 HOH A 48 548 32 HOH HOH . C 3 HOH A 49 549 31 HOH HOH . C 3 HOH A 50 550 45 HOH HOH . C 3 HOH A 51 551 68 HOH HOH . C 3 HOH A 52 552 16 HOH HOH . C 3 HOH A 53 553 6 HOH HOH . C 3 HOH A 54 554 214 HOH HOH . C 3 HOH A 55 555 173 HOH HOH . C 3 HOH A 56 556 82 HOH HOH . C 3 HOH A 57 557 45 HOH HOH . C 3 HOH A 58 558 25 HOH HOH . C 3 HOH A 59 559 11 HOH HOH . C 3 HOH A 60 560 147 HOH HOH . C 3 HOH A 61 561 10 HOH HOH . C 3 HOH A 62 562 106 HOH HOH . C 3 HOH A 63 563 60 HOH HOH . C 3 HOH A 64 564 92 HOH HOH . C 3 HOH A 65 565 14 HOH HOH . C 3 HOH A 66 566 18 HOH HOH . C 3 HOH A 67 567 44 HOH HOH . C 3 HOH A 68 568 9 HOH HOH . C 3 HOH A 69 569 134 HOH HOH . C 3 HOH A 70 570 65 HOH HOH . C 3 HOH A 71 571 64 HOH HOH . C 3 HOH A 72 572 90 HOH HOH . C 3 HOH A 73 573 87 HOH HOH . C 3 HOH A 74 574 148 HOH HOH . C 3 HOH A 75 575 100 HOH HOH . C 3 HOH A 76 576 15 HOH HOH . C 3 HOH A 77 577 171 HOH HOH . C 3 HOH A 78 578 34 HOH HOH . C 3 HOH A 79 579 175 HOH HOH . C 3 HOH A 80 580 4 HOH HOH . C 3 HOH A 81 581 48 HOH HOH . C 3 HOH A 82 582 160 HOH HOH . C 3 HOH A 83 583 51 HOH HOH . C 3 HOH A 84 584 61 HOH HOH . C 3 HOH A 85 585 86 HOH HOH . C 3 HOH A 86 586 56 HOH HOH . C 3 HOH A 87 587 60 HOH HOH . C 3 HOH A 88 588 100 HOH HOH . C 3 HOH A 89 589 117 HOH HOH . C 3 HOH A 90 590 110 HOH HOH . C 3 HOH A 91 591 17 HOH HOH . C 3 HOH A 92 592 57 HOH HOH . C 3 HOH A 93 593 69 HOH HOH . C 3 HOH A 94 594 79 HOH HOH . C 3 HOH A 95 595 24 HOH HOH . C 3 HOH A 96 596 49 HOH HOH . C 3 HOH A 97 597 33 HOH HOH . C 3 HOH A 98 598 12 HOH HOH . C 3 HOH A 99 599 43 HOH HOH . C 3 HOH A 100 600 9 HOH HOH . C 3 HOH A 101 601 19 HOH HOH . C 3 HOH A 102 602 55 HOH HOH . C 3 HOH A 103 603 7 HOH HOH . C 3 HOH A 104 604 20 HOH HOH . C 3 HOH A 105 605 3 HOH HOH . C 3 HOH A 106 606 78 HOH HOH . C 3 HOH A 107 607 21 HOH HOH . C 3 HOH A 108 608 165 HOH HOH . C 3 HOH A 109 609 128 HOH HOH . C 3 HOH A 110 610 198 HOH HOH . C 3 HOH A 111 611 27 HOH HOH . C 3 HOH A 112 612 117 HOH HOH . C 3 HOH A 113 613 29 HOH HOH . C 3 HOH A 114 614 17 HOH HOH . C 3 HOH A 115 615 80 HOH HOH . C 3 HOH A 116 616 23 HOH HOH . C 3 HOH A 117 617 38 HOH HOH . C 3 HOH A 118 618 122 HOH HOH . C 3 HOH A 119 619 8 HOH HOH . C 3 HOH A 120 620 81 HOH HOH . C 3 HOH A 121 621 28 HOH HOH . C 3 HOH A 122 622 190 HOH HOH . C 3 HOH A 123 623 127 HOH HOH . C 3 HOH A 124 624 213 HOH HOH . C 3 HOH A 125 625 189 HOH HOH . C 3 HOH A 126 626 144 HOH HOH . C 3 HOH A 127 627 43 HOH HOH . C 3 HOH A 128 628 18 HOH HOH . C 3 HOH A 129 629 179 HOH HOH . C 3 HOH A 130 630 74 HOH HOH . C 3 HOH A 131 631 56 HOH HOH . C 3 HOH A 132 632 200 HOH HOH . C 3 HOH A 133 633 212 HOH HOH . C 3 HOH A 134 634 2 HOH HOH . C 3 HOH A 135 635 65 HOH HOH . C 3 HOH A 136 636 168 HOH HOH . C 3 HOH A 137 637 216 HOH HOH . C 3 HOH A 138 638 101 HOH HOH . C 3 HOH A 139 639 210 HOH HOH . C 3 HOH A 140 640 152 HOH HOH . C 3 HOH A 141 641 106 HOH HOH . C 3 HOH A 142 642 116 HOH HOH . C 3 HOH A 143 643 125 HOH HOH . C 3 HOH A 144 644 100 HOH HOH . C 3 HOH A 145 645 77 HOH HOH . C 3 HOH A 146 646 40 HOH HOH . C 3 HOH A 147 647 88 HOH HOH . C 3 HOH A 148 648 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 K36 . . . B 2 9.529 4.301 22.297 1 44.04 ? C7 K36 401 A 1 HETATM 2 O O8 K36 . . . B 2 10.273 3.262 22.852 1 37.06 ? O8 K36 401 A 1 HETATM 3 C C9 K36 . . . B 2 10.431 2.143 22.038 1 51.11 ? C9 K36 401 A 1 HETATM 4 O O10 K36 . . . B 2 10.125 2.188 20.897 1 39.37 ? O10 K36 401 A 1 HETATM 5 C C1 K36 . . . B 2 8.037 4.058 22.5 1 49.69 ? C1 K36 401 A 1 HETATM 6 C C2 K36 . . . B 2 7.592 3.006 23.28 1 51.46 ? C2 K36 401 A 1 HETATM 7 C C3 K36 . . . B 2 6.238 2.795 23.453 1 47.99 ? C3 K36 401 A 1 HETATM 8 C C4 K36 . . . B 2 5.325 3.641 22.853 1 48.96 ? C4 K36 401 A 1 HETATM 9 C C5 K36 . . . B 2 5.769 4.692 22.076 1 41.15 ? C5 K36 401 A 1 HETATM 10 C C6 K36 . . . B 2 7.122 4.901 21.899 1 47.14 ? C6 K36 401 A 1 HETATM 11 N N11 K36 . . . B 2 10.971 0.935 22.621 1 34.79 ? N11 K36 401 A 1 HETATM 12 C C12 K36 . . . B 2 11.051 -0.29 21.86 1 44.81 ? C12 K36 401 A 1 HETATM 13 C C17 K36 . . . B 2 9.641 -0.76 21.546 1 39.63 ? C17 K36 401 A 1 HETATM 14 O O18 K36 . . . B 2 8.805 -0.722 22.373 1 41.72 ? O18 K36 401 A 1 HETATM 15 C C13 K36 . . . B 2 11.757 -1.367 22.675 1 44.79 ? C13 K36 401 A 1 HETATM 16 C C14 K36 . . . B 2 13.133 -0.867 23.093 1 39.95 ? C14 K36 401 A 1 HETATM 17 C C15 K36 . . . B 2 13.878 -1.984 23.817 1 38.39 ? C15 K36 401 A 1 HETATM 18 C C16 K36 . . . B 2 13.913 -0.462 21.847 1 41.71 ? C16 K36 401 A 1 HETATM 19 N N19 K36 . . . B 2 9.327 -1.245 20.225 1 25.08 ? N19 K36 401 A 1 HETATM 20 C C20 K36 . . . B 2 7.99 -1.691 19.922 1 30.77 ? C20 K36 401 A 1 HETATM 21 C C21 K36 . . . B 2 8.037 -3.097 19.382 1 27.99 ? C21 K36 401 A 1 HETATM 22 O O22 K36 . . . B 2 6.859 -3.84 19.373 1 35.39 ? O22 K36 401 A 1 HETATM 23 C C24 K36 . . . B 2 7.407 -0.781 18.837 1 37.46 ? C24 K36 401 A 1 HETATM 24 C C25 K36 . . . B 2 7.13 0.662 19.344 1 33.31 ? C25 K36 401 A 1 HETATM 25 C C26 K36 . . . B 2 5.92 0.641 20.202 1 36.53 ? C26 K36 401 A 1 HETATM 26 C C27 K36 . . . B 2 5.087 1.861 19.781 1 41.73 ? C27 K36 401 A 1 HETATM 27 N N28 K36 . . . B 2 5.618 2.294 18.42 1 37.09 ? N28 K36 401 A 1 HETATM 28 C C29 K36 . . . B 2 6.87 1.554 18.166 1 27.13 ? C29 K36 401 A 1 HETATM 29 O O30 K36 . . . B 2 7.541 1.65 17.205 1 37.44 ? O30 K36 401 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 29 #