data_8DD2 # _model_server_result.job_id A81rEbP07byy7VEuRHpacg _model_server_result.datetime_utc '2025-02-05 04:42:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dd2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":402}' # _entry.id 8DD2 # _exptl.entry_id 8DD2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 307.39 _entity.id 10 _entity.src_method man _entity.type non-polymer _entity.pdbx_description Zolpidem _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DD2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DD2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 P N N ? 10 S N N ? 10 U N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 6 oligosaccharide 7 oligosaccharide 8 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 7 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 7 4 3 MAN BMA C1 O1 . O3 HO3 . sing 6 ? 7 5 4 MAN MAN C1 O1 . O2 HO2 . sing 7 ? 7 6 5 MAN MAN C1 O1 . O2 HO2 . sing 8 ? 7 7 3 MAN BMA C1 O1 . O6 HO6 . sing 9 ? 7 8 7 MAN MAN C1 O1 . O6 HO6 . sing 10 ? 7 9 8 MAN MAN C1 O1 . O2 HO2 . sing 11 ? 7 10 7 MAN MAN C1 O1 . O3 HO3 . sing 12 ? 8 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 6 n J NAG 1 F 1 NAG A 401 NAG 6 n J NAG 2 F 2 NAG A 402 NAG 6 n J BMA 3 F 3 BMA A 403 BMA 7 n K NAG 1 G 1 NAG B 401 NAG 7 n K NAG 2 G 2 NAG B 402 NAG 7 n K BMA 3 G 3 BMA B 403 BMA 7 n K MAN 4 G 4 MAN B 407 MAN 7 n K MAN 5 G 5 MAN B 408 MAN 7 n K MAN 6 G 6 MAN B 411 MAN 7 n K MAN 7 G 7 MAN B 412 MAN 7 n K MAN 8 G 8 MAN B 413 MAN 7 n K MAN 9 G 9 MAN B 415 MAN 7 n K MAN 10 G 10 MAN B 414 MAN 6 n L NAG 1 H 1 NAG C 401 NAG 6 n L NAG 2 H 2 NAG C 402 NAG 6 n L BMA 3 H 3 BMA C 403 BMA 6 n M NAG 1 M 1 NAG D 401 NAG 6 n M NAG 2 M 2 NAG D 402 NAG 6 n M BMA 3 M 3 BMA D 403 BMA 8 n N NAG 1 N 1 NAG E 401 NAG 8 n N NAG 2 N 2 NAG E 402 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 136 A CYS 136 1_555 A SG CYS 150 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 139 B CYS 139 1_555 B SG CYS 153 B CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 136 C CYS 136 1_555 C SG CYS 150 C CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 D SG CYS 139 D CYS 139 1_555 D SG CYS 153 D CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 E SG CYS 188 E CYS 151 1_555 E SG CYS 202 E CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 F SG CYS 23 I CYS 23 1_555 F SG CYS 88 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 G SG CYS 22 J CYS 22 1_555 G SG CYS 96 J CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 H SG CYS 23 L CYS 23 1_555 H SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 I SG CYS 22 K CYS 22 1_555 I SG CYS 96 K CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 80 A ASN 80 1_555 O C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.487 ? covale ? covale2 A ND2 ASN 149 A ASN 149 1_555 J C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale3 B ND2 ASN 111 B ASN 111 1_555 K C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.276 ? covale ? covale4 C ND2 ASN 80 C ASN 80 1_555 R C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale5 C ND2 ASN 149 C ASN 149 1_555 L C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.532 ? covale ? covale6 D ND2 ASN 111 D ASN 111 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 E ND2 ASN 245 E ASN 208 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? covale ? covale8 J O4 NAG . F NAG 1 1_555 J C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale9 J O4 NAG . F NAG 2 1_555 J C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale10 K O4 NAG . G NAG 1 1_555 K C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale11 K O4 NAG . G NAG 2 1_555 K C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale12 K O3 BMA . G BMA 3 1_555 K C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale13 K O6 BMA . G BMA 3 1_555 K C1 MAN . G MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale14 K O2 MAN . G MAN 4 1_555 K C1 MAN . G MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale15 K O2 MAN . G MAN 5 1_555 K C1 MAN . G MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale16 K O6 MAN . G MAN 7 1_555 K C1 MAN . G MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale17 K O3 MAN . G MAN 7 1_555 K C1 MAN . G MAN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale18 K O2 MAN . G MAN 8 1_555 K C1 MAN . G MAN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale19 L O4 NAG . H NAG 1 1_555 L C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale20 L O4 NAG . H NAG 2 1_555 L C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale21 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale22 M O4 NAG . M NAG 2 1_555 M C1 BMA . M BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale23 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C19 H21 N3 O' _chem_comp.formula_weight 307.39 _chem_comp.id R5R _chem_comp.mon_nstd_flag . _chem_comp.name Zolpidem _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C13 R5R doub 368 n y C14 C15 R5R sing 369 n y C13 C12 R5R sing 370 n y C15 N16 R5R doub 371 n y C15 N10 R5R sing 372 n y C12 C17 R5R sing 373 n n C12 C11 R5R doub 374 n y N16 C08 R5R sing 375 n y N10 C11 R5R sing 376 n y N10 C09 R5R sing 377 n y C08 C09 R5R doub 378 n y C08 C05 R5R sing 379 n n C06 C05 R5R doub 380 n y C06 C07 R5R sing 381 n y C09 C18 R5R sing 382 n n C05 C04 R5R sing 383 n y O20 C19 R5R doub 384 n n C07 C02 R5R doub 385 n y C04 C03 R5R doub 386 n y C02 C03 R5R sing 387 n y C02 C01 R5R sing 388 n n C19 C18 R5R sing 389 n n C19 N21 R5R sing 390 n n C23 N21 R5R sing 391 n n N21 C22 R5R sing 392 n n C13 H1 R5R sing 393 n n C17 H2 R5R sing 394 n n C17 H3 R5R sing 395 n n C17 H4 R5R sing 396 n n C22 H5 R5R sing 397 n n C22 H6 R5R sing 398 n n C22 H7 R5R sing 399 n n C01 H8 R5R sing 400 n n C01 H9 R5R sing 401 n n C01 H10 R5R sing 402 n n C03 H11 R5R sing 403 n n C04 H12 R5R sing 404 n n C06 H13 R5R sing 405 n n C07 H14 R5R sing 406 n n C11 H15 R5R sing 407 n n C14 H16 R5R sing 408 n n C18 H17 R5R sing 409 n n C18 H18 R5R sing 410 n n C23 H19 R5R sing 411 n n C23 H20 R5R sing 412 n n C23 H21 R5R sing 413 n n # _atom_sites.entry_id 8DD2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 9 NAG A 1 401 404 NAG NAG . P 10 R5R A 1 402 601 R5R LIG . Q 11 ABU A 1 403 701 ABU GAB . R 9 NAG C 1 401 404 NAG NAG . S 10 R5R C 1 402 501 R5R LIG . T 11 ABU C 1 403 601 ABU GAB . U 10 R5R D 1 601 601 R5R LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 R5R . . . P 10 96.668 129.13 127.677 1 89.27 ? C13 R5R 402 A 1 HETATM 2 C C15 R5R . . . P 10 97.982 127.404 128.772 1 89.27 ? C15 R5R 402 A 1 HETATM 3 C C17 R5R . . . P 10 94.792 130.311 128.899 1 89.27 ? C17 R5R 402 A 1 HETATM 4 C C22 R5R . . . P 10 95.968 125.564 134.663 1 89.27 ? C22 R5R 402 A 1 HETATM 5 C C01 R5R . . . P 10 102.062 121.882 132.702 1 89.27 ? C01 R5R 402 A 1 HETATM 6 C C02 R5R . . . P 10 101.185 122.97 132.05 1 89.27 ? C02 R5R 402 A 1 HETATM 7 C C03 R5R . . . P 10 101.321 124.297 132.452 1 89.27 ? C03 R5R 402 A 1 HETATM 8 C C04 R5R . . . P 10 100.519 125.284 131.86 1 89.27 ? C04 R5R 402 A 1 HETATM 9 C C05 R5R . . . P 10 99.594 124.936 130.883 1 89.27 ? C05 R5R 402 A 1 HETATM 10 C C06 R5R . . . P 10 99.463 123.611 130.48 1 89.27 ? C06 R5R 402 A 1 HETATM 11 C C07 R5R . . . P 10 100.263 122.622 131.071 1 89.27 ? C07 R5R 402 A 1 HETATM 12 C C08 R5R . . . P 10 98.759 125.994 130.256 1 89.27 ? C08 R5R 402 A 1 HETATM 13 C C09 R5R . . . P 10 97.72 126.691 130.841 1 89.27 ? C09 R5R 402 A 1 HETATM 14 C C11 R5R . . . P 10 96.247 128.473 129.94 1 89.27 ? C11 R5R 402 A 1 HETATM 15 C C12 R5R . . . P 10 95.932 129.28 128.83 1 89.27 ? C12 R5R 402 A 1 HETATM 16 C C14 R5R . . . P 10 97.688 128.202 127.622 1 89.27 ? C14 R5R 402 A 1 HETATM 17 C C18 R5R . . . P 10 97.208 126.513 132.24 1 89.27 ? C18 R5R 402 A 1 HETATM 18 C C19 R5R . . . P 10 95.8 125.937 132.262 1 89.27 ? C19 R5R 402 A 1 HETATM 19 C C23 R5R . . . P 10 93.896 124.961 133.384 1 89.27 ? C23 R5R 402 A 1 HETATM 20 N N10 R5R . . . P 10 97.256 127.562 129.891 1 89.27 ? N10 R5R 402 A 1 HETATM 21 N N16 R5R . . . P 10 98.895 126.46 128.976 1 89.27 ? N16 R5R 402 A 1 HETATM 22 N N21 R5R . . . P 10 95.243 125.502 133.403 1 89.27 ? N21 R5R 402 A 1 HETATM 23 O O20 R5R . . . P 10 95.158 125.869 131.218 1 89.27 ? O20 R5R 402 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #