data_8DDB # _model_server_result.job_id baLC5LMSSxtl39abRFbeaA _model_server_result.datetime_utc '2025-02-18 00:46:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ddb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 8DDB # _exptl.entry_id 8DDB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 234.004 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-bromo-3-hydroxy-4-oxo-1,4-dihydropyridine-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8DDB _cell.length_a 76.228 _cell.length_b 76.228 _cell.length_c 121.608 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall 'P 62 2 (x,y,z+1/3)' _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 47 A HIS 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc2 A OE2 GLU 74 A GLU 80 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc3 A OD2 ASP 102 A ASP 108 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc4 A OD1 ASP 102 A ASP 108 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc5 A OE2 GLU 113 A GLU 119 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc6 A O ILE 114 A ILE 120 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc7 B MN MN . A MN 301 1_555 E O01 R6X . A R6X 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc8 B MN MN . A MN 301 1_555 E O12 R6X . A R6X 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc9 C MN MN . A MN 302 1_555 E O01 R6X . A R6X 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc10 C MN MN . A MN 302 1_555 E O05 R6X . A R6X 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc11 C MN MN . A MN 302 1_555 G O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc12 C MN MN . A MN 302 1_555 G O HOH . A HOH 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? # _chem_comp.formula 'C6 H4 Br N O4' _chem_comp.formula_weight 234.004 _chem_comp.id R6X _chem_comp.mon_nstd_flag . _chem_comp.name '6-bromo-3-hydroxy-4-oxo-1,4-dihydropyridine-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR09 C08 R6X sing 283 n n O06 C04 R6X doub 284 n n N07 C08 R6X sing 285 n n N07 C03 R6X sing 286 n n C04 O05 R6X sing 287 n n C04 C03 R6X sing 288 n n C08 C10 R6X doub 289 n n C03 C02 R6X doub 290 n n C10 C11 R6X sing 291 n n C02 C11 R6X sing 292 n n C02 O01 R6X sing 293 n n C11 O12 R6X doub 294 n n C10 H101 R6X sing 295 n n N07 H071 R6X sing 296 n n O01 H1 R6X sing 297 n n O05 H2 R6X sing 298 n n # _atom_sites.entry_id 8DDB _atom_sites.fract_transf_matrix[1][1] 0.013119 _atom_sites.fract_transf_matrix[1][2] 0.007574 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008223 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 301 MN MN . C 2 MN A 1 302 302 MN MN . D 3 ACT A 1 303 1 ACT ACT . E 4 R6X A 1 304 1 R6X OH . F 5 SO4 A 1 305 1 SO4 SO4 . G 6 HOH A 1 401 88 HOH HOH . G 6 HOH A 2 402 63 HOH HOH . G 6 HOH A 3 403 52 HOH HOH . G 6 HOH A 4 404 1 HOH HOH . G 6 HOH A 5 405 36 HOH HOH . G 6 HOH A 6 406 7 HOH HOH . G 6 HOH A 7 407 5 HOH HOH . G 6 HOH A 8 408 11 HOH HOH . G 6 HOH A 9 409 49 HOH HOH . G 6 HOH A 10 410 48 HOH HOH . G 6 HOH A 11 411 57 HOH HOH . G 6 HOH A 12 412 43 HOH HOH . G 6 HOH A 13 413 10 HOH HOH . G 6 HOH A 14 414 67 HOH HOH . G 6 HOH A 15 415 4 HOH HOH . G 6 HOH A 16 416 83 HOH HOH . G 6 HOH A 17 417 42 HOH HOH . G 6 HOH A 18 418 22 HOH HOH . G 6 HOH A 19 419 12 HOH HOH . G 6 HOH A 20 420 2 HOH HOH . G 6 HOH A 21 421 31 HOH HOH . G 6 HOH A 22 422 68 HOH HOH . G 6 HOH A 23 423 18 HOH HOH . G 6 HOH A 24 424 51 HOH HOH . G 6 HOH A 25 425 8 HOH HOH . G 6 HOH A 26 426 46 HOH HOH . G 6 HOH A 27 427 89 HOH HOH . G 6 HOH A 28 428 73 HOH HOH . G 6 HOH A 29 429 34 HOH HOH . G 6 HOH A 30 430 17 HOH HOH . G 6 HOH A 31 431 44 HOH HOH . G 6 HOH A 32 432 6 HOH HOH . G 6 HOH A 33 433 9 HOH HOH . G 6 HOH A 34 434 81 HOH HOH . G 6 HOH A 35 435 3 HOH HOH . G 6 HOH A 36 436 16 HOH HOH . G 6 HOH A 37 437 40 HOH HOH . G 6 HOH A 38 438 15 HOH HOH . G 6 HOH A 39 439 30 HOH HOH . G 6 HOH A 40 440 78 HOH HOH . G 6 HOH A 41 441 41 HOH HOH . G 6 HOH A 42 442 62 HOH HOH . G 6 HOH A 43 443 53 HOH HOH . G 6 HOH A 44 444 80 HOH HOH . G 6 HOH A 45 445 25 HOH HOH . G 6 HOH A 46 446 45 HOH HOH . G 6 HOH A 47 447 84 HOH HOH . G 6 HOH A 48 448 38 HOH HOH . G 6 HOH A 49 449 37 HOH HOH . G 6 HOH A 50 450 77 HOH HOH . G 6 HOH A 51 451 72 HOH HOH . G 6 HOH A 52 452 54 HOH HOH . G 6 HOH A 53 453 47 HOH HOH . G 6 HOH A 54 454 61 HOH HOH . G 6 HOH A 55 455 79 HOH HOH . G 6 HOH A 56 456 35 HOH HOH . G 6 HOH A 57 457 55 HOH HOH . G 6 HOH A 58 458 85 HOH HOH . G 6 HOH A 59 459 29 HOH HOH . G 6 HOH A 60 460 66 HOH HOH . G 6 HOH A 61 461 32 HOH HOH . G 6 HOH A 62 462 69 HOH HOH . G 6 HOH A 63 463 26 HOH HOH . G 6 HOH A 64 464 39 HOH HOH . G 6 HOH A 65 465 56 HOH HOH . G 6 HOH A 66 466 65 HOH HOH . G 6 HOH A 67 467 20 HOH HOH . G 6 HOH A 68 468 14 HOH HOH . G 6 HOH A 69 469 64 HOH HOH . G 6 HOH A 70 470 28 HOH HOH . G 6 HOH A 71 471 59 HOH HOH . G 6 HOH A 72 472 86 HOH HOH . G 6 HOH A 73 473 70 HOH HOH . G 6 HOH A 74 474 24 HOH HOH . G 6 HOH A 75 475 74 HOH HOH . G 6 HOH A 76 476 71 HOH HOH . G 6 HOH A 77 477 82 HOH HOH . G 6 HOH A 78 478 60 HOH HOH . G 6 HOH A 79 479 58 HOH HOH . G 6 HOH A 80 480 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 R6X . . . E 4 19.789 17.713 -13.328 1 54.34 ? C02 R6X 304 A 1 HETATM 2 C C03 R6X . . . E 4 19.367 17.719 -14.801 1 63.65 ? C03 R6X 304 A 1 HETATM 3 C C04 R6X . . . E 4 18.139 16.95 -15.293 1 68.89 ? C04 R6X 304 A 1 HETATM 4 C C08 R6X . . . E 4 21.367 19.249 -15.351 1 87.85 ? C08 R6X 304 A 1 HETATM 5 C C10 R6X . . . E 4 21.79 19.246 -13.887 1 62.9 ? C10 R6X 304 A 1 HETATM 6 C C11 R6X . . . E 4 20.994 18.477 -12.895 1 61.48 ? C11 R6X 304 A 1 HETATM 7 N N07 R6X . . . E 4 20.167 18.488 -15.789 1 74.48 ? N07 R6X 304 A 1 HETATM 8 O O01 R6X . . . E 4 19.057 16.998 -12.376 1 62.24 -1 O01 R6X 304 A 1 HETATM 9 O O05 R6X . . . E 4 17.289 16.508 -14.478 1 74.77 -1 O05 R6X 304 A 1 HETATM 10 O O06 R6X . . . E 4 17.974 16.763 -16.527 1 76.88 ? O06 R6X 304 A 1 HETATM 11 O O12 R6X . . . E 4 21.327 18.479 -11.759 1 53.69 ? O12 R6X 304 A 1 HETATM 12 BR BR09 R6X . . . E 4 22.402 20.25 -16.648 1 129.17 ? BR09 R6X 304 A 1 HETATM 13 H H101 R6X . . . E 4 22.665 19.8 -13.57 1 75.57 ? H101 R6X 304 A 1 HETATM 14 H H071 R6X . . . E 4 19.896 18.495 -16.753 1 89.47 ? H071 R6X 304 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #