data_8DDV
#
_model_server_result.job_id            dKTvaIsIrH0F_AHBpa0uhw 
_model_server_result.datetime_utc      '2024-12-26 15:25:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ddv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1404}' 
#
_entry.id    8DDV 
#
_exptl.entry_id    8DDV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              544.805 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DDV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DDV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 L N N 
? 4 P N N 
? 4 R N N 
#
_chem_comp.formula           'C34 H56 O5' 
_chem_comp.formula_weight    544.805 
_chem_comp.id                9Z9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O25 C26 9Z9 sing 125 n n 
O25 C24 9Z9 sing 126 n n 
C50 O49 9Z9 sing 127 n n 
O49 C48 9Z9 sing 128 n n 
C24 C23 9Z9 sing 129 n n 
C48 C23 9Z9 sing 130 n n 
C23 C22 9Z9 sing 131 n n 
C22 C21 9Z9 sing 132 n n 
C21 O20 9Z9 sing 133 n n 
O20 C17 9Z9 sing 134 n n 
C17 C18 9Z9 sing 135 n n 
C17 C16 9Z9 sing 136 n n 
C18 C19 9Z9 sing 137 n n 
C16 C13 9Z9 sing 138 n n 
C19 C11 9Z9 sing 139 n n 
C13 C11 9Z9 sing 140 n n 
C13 C14 9Z9 doub 141 n n 
C11 C12 9Z9 sing 142 n n 
C11 C08 9Z9 sing 143 n n 
C14 C15 9Z9 sing 144 n n 
C08 C09 9Z9 sing 145 n n 
C08 C07 9Z9 sing 146 n n 
C15 C07 9Z9 sing 147 n n 
C09 C10 9Z9 sing 148 n n 
C07 C06 9Z9 sing 149 n n 
C10 C02 9Z9 sing 150 n n 
C06 C02 9Z9 sing 151 n n 
C06 C05 9Z9 sing 152 n n 
C02 C01 9Z9 sing 153 n n 
C02 C03 9Z9 sing 154 n n 
C05 C04 9Z9 sing 155 n n 
C03 C04 9Z9 sing 156 n n 
C03 C74 9Z9 sing 157 n n 
C04 O72 9Z9 sing 158 n n 
C74 C75 9Z9 sing 159 n n 
C74 C73 9Z9 sing 160 n n 
O72 C73 9Z9 sing 161 n n 
C73 O80 9Z9 sing 162 n n 
C73 C76 9Z9 sing 163 n n 
O80 C79 9Z9 sing 164 n n 
C76 C77 9Z9 sing 165 n n 
C79 C78 9Z9 sing 166 n n 
C77 C78 9Z9 sing 167 n n 
C78 C81 9Z9 sing 168 n n 
C01 H1 9Z9 sing 169 n n 
C01 H2 9Z9 sing 170 n n 
C01 H3 9Z9 sing 171 n n 
C03 H4 9Z9 sing 172 n n 
C04 H5 9Z9 sing 173 n n 
C05 H6 9Z9 sing 174 n n 
C05 H7 9Z9 sing 175 n n 
C06 H8 9Z9 sing 176 n n 
C07 H9 9Z9 sing 177 n n 
C08 H10 9Z9 sing 178 n n 
C09 H11 9Z9 sing 179 n n 
C09 H12 9Z9 sing 180 n n 
C10 H13 9Z9 sing 181 n n 
C10 H14 9Z9 sing 182 n n 
C12 H15 9Z9 sing 183 n n 
C12 H16 9Z9 sing 184 n n 
C12 H17 9Z9 sing 185 n n 
C14 H18 9Z9 sing 186 n n 
C15 H19 9Z9 sing 187 n n 
C15 H20 9Z9 sing 188 n n 
C16 H21 9Z9 sing 189 n n 
C16 H22 9Z9 sing 190 n n 
C17 H23 9Z9 sing 191 n n 
C18 H24 9Z9 sing 192 n n 
C18 H25 9Z9 sing 193 n n 
C19 H26 9Z9 sing 194 n n 
C19 H27 9Z9 sing 195 n n 
C21 H28 9Z9 sing 196 n n 
C21 H29 9Z9 sing 197 n n 
C22 H30 9Z9 sing 198 n n 
C22 H31 9Z9 sing 199 n n 
C23 H32 9Z9 sing 200 n n 
C24 H33 9Z9 sing 201 n n 
C24 H34 9Z9 sing 202 n n 
C26 H35 9Z9 sing 203 n n 
C26 H36 9Z9 sing 204 n n 
C26 H37 9Z9 sing 205 n n 
C48 H38 9Z9 sing 206 n n 
C48 H39 9Z9 sing 207 n n 
C50 H40 9Z9 sing 208 n n 
C50 H41 9Z9 sing 209 n n 
C50 H42 9Z9 sing 210 n n 
C74 H43 9Z9 sing 211 n n 
C75 H44 9Z9 sing 212 n n 
C75 H45 9Z9 sing 213 n n 
C75 H46 9Z9 sing 214 n n 
C76 H47 9Z9 sing 215 n n 
C76 H48 9Z9 sing 216 n n 
C77 H49 9Z9 sing 217 n n 
C77 H50 9Z9 sing 218 n n 
C78 H51 9Z9 sing 219 n n 
C79 H52 9Z9 sing 220 n n 
C79 H53 9Z9 sing 221 n n 
C81 H54 9Z9 sing 222 n n 
C81 H55 9Z9 sing 223 n n 
C81 H56 9Z9 sing 224 n n 
#
_atom_sites.entry_id                     8DDV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 3PH A 1 1401 1401 3PH 3PH . 
J 4 9Z9 A 1 1402 1402 9Z9 9Z9 . 
K 5 PIO A 1 1403 1403 PIO PIO . 
L 4 9Z9 A 1 1404 1402 9Z9 9Z9 . 
M 6 NA A 1 1405 2 NA NA . 
N 3 3PH B 1 1401 1401 3PH 3PH . 
O 5 PIO B 1 1402 1403 PIO PIO . 
P 4 9Z9 C 1 1401 1402 9Z9 9Z9 . 
Q 3 3PH C 1 1402 1401 3PH 3PH . 
R 4 9Z9 C 1 1403 1402 9Z9 9Z9 . 
S 5 PIO C 1 1404 1403 PIO PIO . 
T 6 NA C 1 1405 1 NA NA . 
U 3 3PH D 1 1401 1401 3PH 3PH . 
V 5 PIO D 1 1402 1403 PIO PIO . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 9Z9 . . . L 4 229.453 185.363 246.965 1 26.17 ? C01 9Z9 1404 A 1 
HETATM 2 C C02 9Z9 . . . L 4 230.308 186.637 247.378 1 26.17 ? C02 9Z9 1404 A 1 
HETATM 3 C C03 9Z9 . . . L 4 230.379 187.413 246.731 1 26.17 ? C03 9Z9 1404 A 1 
HETATM 4 C C04 9Z9 . . . L 4 229.246 188.25 246.972 1 26.17 ? C04 9Z9 1404 A 1 
HETATM 5 C C05 9Z9 . . . L 4 228.582 187.74 248.296 1 26.17 ? C05 9Z9 1404 A 1 
HETATM 6 C C06 9Z9 . . . L 4 229.483 187.449 248.734 1 26.17 ? C06 9Z9 1404 A 1 
HETATM 7 C C07 9Z9 . . . L 4 229.448 186.264 250.14 1 26.17 ? C07 9Z9 1404 A 1 
HETATM 8 C C08 9Z9 . . . L 4 230.806 185.695 250.286 1 26.17 ? C08 9Z9 1404 A 1 
HETATM 9 C C09 9Z9 . . . L 4 231.328 185.213 249.017 1 26.17 ? C09 9Z9 1404 A 1 
HETATM 10 C C10 9Z9 . . . L 4 231.714 186.105 248.172 1 26.17 ? C10 9Z9 1404 A 1 
HETATM 11 C C11 9Z9 . . . L 4 230.779 184.469 251.325 1 26.17 ? C11 9Z9 1404 A 1 
HETATM 12 C C12 9Z9 . . . L 4 230.351 183.156 250.597 1 26.17 ? C12 9Z9 1404 A 1 
HETATM 13 C C13 9Z9 . . . L 4 229.802 184.738 252.449 1 26.17 ? C13 9Z9 1404 A 1 
HETATM 14 C C14 9Z9 . . . L 4 228.992 185.931 252.445 1 26.17 ? C14 9Z9 1404 A 1 
HETATM 15 C C15 9Z9 . . . L 4 229.123 186.972 251.261 1 26.17 ? C15 9Z9 1404 A 1 
HETATM 16 C C16 9Z9 . . . L 4 229.669 183.752 253.58 1 26.17 ? C16 9Z9 1404 A 1 
HETATM 17 C C17 9Z9 . . . L 4 231.063 183.458 254.175 1 26.17 ? C17 9Z9 1404 A 1 
HETATM 18 C C18 9Z9 . . . L 4 232.08 183.109 253.018 1 26.17 ? C18 9Z9 1404 A 1 
HETATM 19 C C19 9Z9 . . . L 4 232.126 184.284 251.926 1 26.17 ? C19 9Z9 1404 A 1 
HETATM 20 O O20 9Z9 . . . L 4 230.963 182.384 255.033 1 26.17 ? O20 9Z9 1404 A 1 
HETATM 21 C C21 9Z9 . . . L 4 230.322 182.685 256.274 1 26.17 ? C21 9Z9 1404 A 1 
HETATM 22 C C22 9Z9 . . . L 4 229.672 181.39 256.864 1 26.17 ? C22 9Z9 1404 A 1 
HETATM 23 C C23 9Z9 . . . L 4 229.063 181.7 258.27 1 26.17 ? C23 9Z9 1404 A 1 
HETATM 24 C C24 9Z9 . . . L 4 227.995 182.815 258.142 1 26.17 ? C24 9Z9 1404 A 1 
HETATM 25 O O25 9Z9 . . . L 4 227.791 183.421 259.404 1 26.17 ? O25 9Z9 1404 A 1 
HETATM 26 C C26 9Z9 . . . L 4 226.429 183.6 259.748 1 26.17 ? C26 9Z9 1404 A 1 
HETATM 27 C C48 9Z9 . . . L 4 228.396 180.415 258.85 1 26.17 ? C48 9Z9 1404 A 1 
HETATM 28 O O49 9Z9 . . . L 4 229.392 179.471 259.206 1 26.17 ? O49 9Z9 1404 A 1 
HETATM 29 C C50 9Z9 . . . L 4 229.045 178.667 260.319 1 26.17 ? C50 9Z9 1404 A 1 
HETATM 30 O O72 9Z9 . . . L 4 228.379 188.164 245.852 1 26.17 ? O72 9Z9 1404 A 1 
HETATM 31 C C73 9Z9 . . . L 4 229.047 188.051 245.075 1 26.17 ? C73 9Z9 1404 A 1 
HETATM 32 C C74 9Z9 . . . L 4 230.452 187.281 245.913 1 26.17 ? C74 9Z9 1404 A 1 
HETATM 33 C C75 9Z9 . . . L 4 232.116 187.967 245.319 1 26.17 ? C75 9Z9 1404 A 1 
HETATM 34 C C76 9Z9 . . . L 4 227.643 188.383 244.495 1 26.17 ? C76 9Z9 1404 A 1 
HETATM 35 C C77 9Z9 . . . L 4 227.605 188.222 242.947 1 26.17 ? C77 9Z9 1404 A 1 
HETATM 36 C C78 9Z9 . . . L 4 229.008 188.382 242.348 1 26.17 ? C78 9Z9 1404 A 1 
HETATM 37 C C79 9Z9 . . . L 4 229.765 189.41 243.188 1 26.17 ? C79 9Z9 1404 A 1 
HETATM 38 O O80 9Z9 . . . L 4 230.064 188.818 244.457 1 26.17 ? O80 9Z9 1404 A 1 
HETATM 39 C C81 9Z9 . . . L 4 228.919 188.878 240.907 1 26.17 ? C81 9Z9 1404 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           39 
#