data_8DE2
#
_model_server_result.job_id            tquoZqQVbu99ylqgkv65YQ 
_model_server_result.datetime_utc      '2025-01-11 06:26:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8de2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":301}' 
#
_entry.id    8DE2 
#
_exptl.entry_id    8DE2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              267.26 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DE2 
_cell.length_a            60.93 
_cell.length_b            86.07 
_cell.length_c            96.94 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DE2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I 1 1 
B,F,J 2 1 
C,G,K 3 1 
D,H,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 53 A CYS 77 1_555 A SG CYS 99 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 B SG CYS 53 B CYS 77 1_555 B SG CYS 99 B CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 C SG CYS 53 C CYS 77 1_555 C SG CYS 99 C CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 D SG CYS 53 D CYS 77 1_555 D SG CYS 99 D CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 A OG SER 46 A SER 70 1_555 E CAN NXL . A NXL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? 
covale ? covale2 B OG SER 46 B SER 70 1_555 F CAN NXL . B NXL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
covale ? covale3 C OG SER 46 C SER 70 1_555 G CAN NXL . C NXL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
covale ? covale4 D OG SER 46 D SER 70 1_555 H CAN NXL . D NXL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
#
_chem_comp.formula           'C7 H13 N3 O6 S' 
_chem_comp.formula_weight    267.26 
_chem_comp.id                NXL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'avibactam, bound form;NXL104, bound form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
NAK CAO NXL sing 237 n n 
CAJ CAO NXL sing 238 n n 
CAJ N NXL sing 239 n n 
OAL SAR NXL sing 240 n n 
CAO CAH NXL sing 241 n n 
CAN N NXL sing 242 n n 
CAN OAC NXL doub 243 n n 
OAG SAR NXL doub 244 n n 
N CA NXL sing 245 n n 
SAR OAE NXL doub 246 n n 
SAR OAD NXL sing 247 n n 
O C NXL doub 248 n n 
CAH CB NXL sing 249 n n 
CA C NXL sing 250 n n 
CA CB NXL sing 251 n n 
C NAA NXL sing 252 n n 
NAK OAL NXL sing 253 n n 
CAN H1 NXL sing 254 n n 
CAJ H2 NXL sing 255 n n 
CAJ H3 NXL sing 256 n n 
CA H4 NXL sing 257 n n 
NAA H5 NXL sing 258 n n 
NAA H6 NXL sing 259 n n 
CB H7 NXL sing 260 n n 
CB H8 NXL sing 261 n n 
CAH H9 NXL sing 262 n n 
CAH H10 NXL sing 263 n n 
CAO H11 NXL sing 264 n n 
NAK H12 NXL sing 265 n n 
OAD H13 NXL sing 266 n n 
#
_atom_sites.entry_id                     8DE2 
_atom_sites.fract_transf_matrix[1][1]    0.016412 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011618 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010316 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NXL A 1 301 301 NXL NXL . 
F 2 NXL B 1 301 301 NXL NXL . 
G 2 NXL C 1 301 301 NXL NXL . 
H 2 NXL D 1 301 301 NXL NXL . 
I 3 HOH A 1 401 79 HOH HOH . 
I 3 HOH A 2 402 52 HOH HOH . 
I 3 HOH A 3 403 13 HOH HOH . 
I 3 HOH A 4 404 78 HOH HOH . 
I 3 HOH A 5 405 10 HOH HOH . 
I 3 HOH A 6 406 77 HOH HOH . 
I 3 HOH A 7 407 36 HOH HOH . 
I 3 HOH A 8 408 80 HOH HOH . 
I 3 HOH A 9 409 45 HOH HOH . 
I 3 HOH A 10 410 17 HOH HOH . 
I 3 HOH A 11 411 29 HOH HOH . 
I 3 HOH A 12 412 21 HOH HOH . 
I 3 HOH A 13 413 61 HOH HOH . 
I 3 HOH A 14 414 83 HOH HOH . 
I 3 HOH A 15 415 86 HOH HOH . 
I 3 HOH A 16 416 22 HOH HOH . 
I 3 HOH A 17 417 59 HOH HOH . 
I 3 HOH A 18 418 60 HOH HOH . 
I 3 HOH A 19 419 30 HOH HOH . 
I 3 HOH A 20 420 70 HOH HOH . 
J 3 HOH B 1 401 1 HOH HOH . 
J 3 HOH B 2 402 26 HOH HOH . 
J 3 HOH B 3 403 58 HOH HOH . 
J 3 HOH B 4 404 50 HOH HOH . 
J 3 HOH B 5 405 88 HOH HOH . 
J 3 HOH B 6 406 38 HOH HOH . 
J 3 HOH B 7 407 7 HOH HOH . 
J 3 HOH B 8 408 24 HOH HOH . 
J 3 HOH B 9 409 32 HOH HOH . 
J 3 HOH B 10 410 11 HOH HOH . 
J 3 HOH B 11 411 75 HOH HOH . 
J 3 HOH B 12 412 6 HOH HOH . 
J 3 HOH B 13 413 66 HOH HOH . 
J 3 HOH B 14 414 73 HOH HOH . 
J 3 HOH B 15 415 54 HOH HOH . 
J 3 HOH B 16 416 81 HOH HOH . 
J 3 HOH B 17 417 41 HOH HOH . 
J 3 HOH B 18 418 48 HOH HOH . 
J 3 HOH B 19 419 14 HOH HOH . 
J 3 HOH B 20 420 15 HOH HOH . 
J 3 HOH B 21 421 57 HOH HOH . 
J 3 HOH B 22 422 99 HOH HOH . 
J 3 HOH B 23 423 51 HOH HOH . 
J 3 HOH B 24 424 19 HOH HOH . 
J 3 HOH B 25 425 84 HOH HOH . 
J 3 HOH B 26 426 96 HOH HOH . 
J 3 HOH B 27 427 97 HOH HOH . 
K 3 HOH C 1 401 89 HOH HOH . 
K 3 HOH C 2 402 94 HOH HOH . 
K 3 HOH C 3 403 31 HOH HOH . 
K 3 HOH C 4 404 62 HOH HOH . 
K 3 HOH C 5 405 3 HOH HOH . 
K 3 HOH C 6 406 82 HOH HOH . 
K 3 HOH C 7 407 43 HOH HOH . 
K 3 HOH C 8 408 16 HOH HOH . 
K 3 HOH C 9 409 42 HOH HOH . 
K 3 HOH C 10 410 93 HOH HOH . 
K 3 HOH C 11 411 20 HOH HOH . 
K 3 HOH C 12 412 74 HOH HOH . 
K 3 HOH C 13 413 64 HOH HOH . 
K 3 HOH C 14 414 47 HOH HOH . 
K 3 HOH C 15 415 44 HOH HOH . 
K 3 HOH C 16 416 87 HOH HOH . 
K 3 HOH C 17 417 28 HOH HOH . 
K 3 HOH C 18 418 72 HOH HOH . 
K 3 HOH C 19 419 68 HOH HOH . 
K 3 HOH C 20 420 23 HOH HOH . 
K 3 HOH C 21 421 69 HOH HOH . 
K 3 HOH C 22 422 91 HOH HOH . 
L 3 HOH D 1 401 101 HOH HOH . 
L 3 HOH D 2 402 12 HOH HOH . 
L 3 HOH D 3 403 27 HOH HOH . 
L 3 HOH D 4 404 102 HOH HOH . 
L 3 HOH D 5 405 63 HOH HOH . 
L 3 HOH D 6 406 33 HOH HOH . 
L 3 HOH D 7 407 18 HOH HOH . 
L 3 HOH D 8 408 39 HOH HOH . 
L 3 HOH D 9 409 55 HOH HOH . 
L 3 HOH D 10 410 49 HOH HOH . 
L 3 HOH D 11 411 53 HOH HOH . 
L 3 HOH D 12 412 2 HOH HOH . 
L 3 HOH D 13 413 40 HOH HOH . 
L 3 HOH D 14 414 4 HOH HOH . 
L 3 HOH D 15 415 25 HOH HOH . 
L 3 HOH D 16 416 76 HOH HOH . 
L 3 HOH D 17 417 85 HOH HOH . 
L 3 HOH D 18 418 9 HOH HOH . 
L 3 HOH D 19 419 71 HOH HOH . 
L 3 HOH D 20 420 5 HOH HOH . 
L 3 HOH D 21 421 56 HOH HOH . 
L 3 HOH D 22 422 34 HOH HOH . 
L 3 HOH D 23 423 67 HOH HOH . 
L 3 HOH D 24 424 90 HOH HOH . 
L 3 HOH D 25 425 37 HOH HOH . 
L 3 HOH D 26 426 8 HOH HOH . 
L 3 HOH D 27 427 46 HOH HOH . 
L 3 HOH D 28 428 92 HOH HOH . 
L 3 HOH D 29 429 100 HOH HOH . 
L 3 HOH D 30 430 95 HOH HOH . 
L 3 HOH D 31 431 98 HOH HOH . 
L 3 HOH D 32 432 35 HOH HOH . 
L 3 HOH D 33 433 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAC NXL . . . G 2 -9.242 29.961 -74.068 1 45.87 ? OAC NXL 301 C 1 
HETATM 2 C CAN NXL . . . G 2 -9.256 30.01 -72.885 1 40.23 ? CAN NXL 301 C 1 
HETATM 3 N N NXL . . . G 2 -10.307 30.75 -72.188 1 45.92 ? N NXL 301 C 1 
HETATM 4 C CAJ NXL . . . G 2 -10.397 30.848 -70.693 1 42.52 ? CAJ NXL 301 C 1 
HETATM 5 C CA NXL . . . G 2 -11.454 31.486 -72.845 1 44.35 ? CA NXL 301 C 1 
HETATM 6 C C NXL . . . G 2 -10.999 32.907 -73.212 1 43.6 ? C NXL 301 C 1 
HETATM 7 O O NXL . . . G 2 -10.265 33.501 -72.499 1 43.95 ? O NXL 301 C 1 
HETATM 8 N NAA NXL . . . G 2 -11.486 33.538 -74.447 1 43.67 ? NAA NXL 301 C 1 
HETATM 9 C CB NXL . . . G 2 -12.706 31.607 -71.969 1 46.21 ? CB NXL 301 C 1 
HETATM 10 C CAH NXL . . . G 2 -12.889 30.566 -70.944 1 38.74 ? CAH NXL 301 C 1 
HETATM 11 C CAO NXL . . . G 2 -11.671 30.186 -70.197 1 35.37 ? CAO NXL 301 C 1 
HETATM 12 N NAK NXL . . . G 2 -11.495 28.72 -70.36 1 34.56 ? NAK NXL 301 C 1 
HETATM 13 O OAL NXL . . . G 2 -11.928 28.337 -71.663 1 33.08 ? OAL NXL 301 C 1 
HETATM 14 S SAR NXL . . . G 2 -11.609 26.731 -71.805 1 32.23 ? SAR NXL 301 C 1 
HETATM 15 O OAD NXL . . . G 2 -12.003 25.982 -70.556 1 46.4 ? OAD NXL 301 C 1 
HETATM 16 O OAE NXL . . . G 2 -10.126 26.473 -71.822 1 44.98 ? OAE NXL 301 C 1 
HETATM 17 O OAG NXL . . . G 2 -12.284 26.165 -73.02 1 43.34 -1 OAG NXL 301 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           17 
#