data_8DE4 # _model_server_result.job_id lpgCB7NPqU4zqjInTKpzwQ _model_server_result.datetime_utc '2024-12-22 04:21:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8de4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1004}' # _entry.id 8DE4 # _exptl.entry_id 8DE4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 149.233 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-N-methyl-1-phenylpropan-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DE4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DE4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG A 2502 NAG 4 n D NAG 2 D 2 NAG A 2503 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 122 A CYS 237 1_555 A SG CYS 131 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 22 B CYS 41 1_555 B SG CYS 96 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 C SG CYS 23 C CYS 43 1_555 C SG CYS 92 C CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 130 A ASN 245 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A O GLY 16 A GLY 131 1_555 G NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc2 A O ALA 18 A ALA 133 1_555 F NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc3 A O VAL 19 A VAL 134 1_555 G NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc4 A O SER 258 A SER 373 1_555 F NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc5 A O LEU 356 A LEU 471 1_555 G NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc6 A OD2 ASP 359 A ASP 474 1_555 G NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? # _chem_comp.formula 'C10 H15 N' _chem_comp.formula_weight 149.233 _chem_comp.id B40 _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-N-methyl-1-phenylpropan-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Methamphetamine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CM B40 sing 70 n n N CA B40 sing 71 n n N HN B40 sing 72 n n C CA B40 sing 73 n n CA CB B40 sing 74 n n CA HA B40 sing 75 n n C H B40 sing 76 n n C HB B40 sing 77 n n C HC B40 sing 78 n n CB CG B40 sing 79 n n CB HBA B40 sing 80 n n CB HBB B40 sing 81 n n CD2 CG B40 doub 82 n y CG CD1 B40 sing 83 n y CD1 CE1 B40 doub 84 n y CD1 HD1 B40 sing 85 n n CD2 CE2 B40 sing 86 n y CD2 HD2 B40 sing 87 n n CZ CE1 B40 sing 88 n y CE1 HE1 B40 sing 89 n n CE2 CZ B40 doub 90 n y CE2 HE2 B40 sing 91 n n CZ HZ B40 sing 92 n n CM HM B40 sing 93 n n CM HMA B40 sing 94 n n CM HMB B40 sing 95 n n # _atom_sites.entry_id 8DE4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 CL A 1 1001 1001 CL CL . F 6 NA A 1 1002 1101 NA NA . G 6 NA A 1 1003 1201 NA NA . H 7 B40 A 1 1004 2601 B40 B40 . I 8 Y01 A 1 1005 3101 Y01 CHS . J 8 Y01 A 1 1006 3201 Y01 CHS . K 9 LMT A 1 1007 3301 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N B40 . . . H 7 154.3 150.359 139.982 1 57.58 ? N B40 1004 A 1 HETATM 2 C CA B40 . . . H 7 154.429 151.75 139.58 1 50.15 ? CA B40 1004 A 1 HETATM 3 C C B40 . . . H 7 153.429 152.057 138.467 1 55.96 ? C B40 1004 A 1 HETATM 4 C CB B40 . . . H 7 154.138 152.654 140.776 1 50.78 ? CB B40 1004 A 1 HETATM 5 C CG B40 . . . H 7 155.441 153.255 141.299 1 55.61 ? CG B40 1004 A 1 HETATM 6 C CD1 B40 . . . H 7 156.225 154.037 140.469 1 54.36 ? CD1 B40 1004 A 1 HETATM 7 C CD2 B40 . . . H 7 155.839 153.018 142.606 1 55.69 ? CD2 B40 1004 A 1 HETATM 8 C CE1 B40 . . . H 7 157.407 154.584 140.942 1 54.05 ? CE1 B40 1004 A 1 HETATM 9 C CE2 B40 . . . H 7 157.02 153.565 143.079 1 52.11 ? CE2 B40 1004 A 1 HETATM 10 C CZ B40 . . . H 7 157.804 154.347 142.248 1 51.08 ? CZ B40 1004 A 1 HETATM 11 C CM B40 . . . H 7 154.52 149.487 138.839 1 53.45 ? CM B40 1004 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 83 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 1508 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 11 #