data_8DE4 # _model_server_result.job_id SGQvPS1xWUGXVaUkiqhDKw _model_server_result.datetime_utc '2024-12-22 04:13:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8de4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1005}' # _entry.id 8DE4 # _exptl.entry_id 8DE4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DE4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DE4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 I N N ? 8 J N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG A 2502 NAG 4 n D NAG 2 D 2 NAG A 2503 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 122 A CYS 237 1_555 A SG CYS 131 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 22 B CYS 41 1_555 B SG CYS 96 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 C SG CYS 23 C CYS 43 1_555 C SG CYS 92 C CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 130 A ASN 245 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A O GLY 16 A GLY 131 1_555 G NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc2 A O ALA 18 A ALA 133 1_555 F NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc3 A O VAL 19 A VAL 134 1_555 G NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc4 A O SER 258 A SER 373 1_555 F NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc5 A O LEU 356 A LEU 471 1_555 G NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc6 A OD2 ASP 359 A ASP 474 1_555 G NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 512 n n CBA CAB Y01 sing 513 n n CBA CAN Y01 sing 514 n n CAN CAJ Y01 sing 515 n n CAJ CAO Y01 sing 516 n n CAO CBB Y01 sing 517 n n CBB CAC Y01 sing 518 n n CBB CBE Y01 sing 519 n n CBE CAP Y01 sing 520 n n CBE CBI Y01 sing 521 n n CAP CAQ Y01 sing 522 n n CAQ CBG Y01 sing 523 n n CBG CBI Y01 sing 524 n n CBG CBD Y01 sing 525 n n CBI CAE Y01 sing 526 n n CBI CAU Y01 sing 527 n n CAU CAS Y01 sing 528 n n CAS CBF Y01 sing 529 n n CBF CBD Y01 sing 530 n n CBF CBH Y01 sing 531 n n CBD CAK Y01 sing 532 n n CAK CAI Y01 sing 533 n n CAI CAZ Y01 doub 534 n n CAZ CAV Y01 sing 535 n n CAZ CBH Y01 sing 536 n n CAV CBC Y01 sing 537 n n CBH CAD Y01 sing 538 n n CBH CAT Y01 sing 539 n n CAT CAR Y01 sing 540 n n CAR CBC Y01 sing 541 n n CBC OAW Y01 sing 542 n n OAW CAY Y01 sing 543 n n CAY OAG Y01 doub 544 n n CAY CAM Y01 sing 545 n n CAM CAL Y01 sing 546 n n CAL CAX Y01 sing 547 n n CAX OAH Y01 sing 548 n n CAX OAF Y01 doub 549 n n CAA HAA1 Y01 sing 550 n n CAA HAA2 Y01 sing 551 n n CAA HAA3 Y01 sing 552 n n CBA HBA Y01 sing 553 n n CAB HAB1 Y01 sing 554 n n CAB HAB2 Y01 sing 555 n n CAB HAB3 Y01 sing 556 n n CAN HAN1 Y01 sing 557 n n CAN HAN2 Y01 sing 558 n n CAJ HAJ1 Y01 sing 559 n n CAJ HAJ2 Y01 sing 560 n n CAO HAO1 Y01 sing 561 n n CAO HAO2 Y01 sing 562 n n CBB HBB Y01 sing 563 n n CAC HAC1 Y01 sing 564 n n CAC HAC2 Y01 sing 565 n n CAC HAC3 Y01 sing 566 n n CBE HBE Y01 sing 567 n n CAP HAP1 Y01 sing 568 n n CAP HAP2 Y01 sing 569 n n CAQ HAQ1 Y01 sing 570 n n CAQ HAQ2 Y01 sing 571 n n CBG HBG Y01 sing 572 n n CBD HBD Y01 sing 573 n n CAE HAE1 Y01 sing 574 n n CAE HAE2 Y01 sing 575 n n CAE HAE3 Y01 sing 576 n n CAU HAU1 Y01 sing 577 n n CAU HAU2 Y01 sing 578 n n CAS HAS1 Y01 sing 579 n n CAS HAS2 Y01 sing 580 n n CBF HBF Y01 sing 581 n n CAK HAK1 Y01 sing 582 n n CAK HAK2 Y01 sing 583 n n CAI HAI Y01 sing 584 n n CAV HAV1 Y01 sing 585 n n CAV HAV2 Y01 sing 586 n n CBC HBC Y01 sing 587 n n CAD HAD1 Y01 sing 588 n n CAD HAD2 Y01 sing 589 n n CAD HAD3 Y01 sing 590 n n CAT HAT1 Y01 sing 591 n n CAT HAT2 Y01 sing 592 n n CAR HAR1 Y01 sing 593 n n CAR HAR2 Y01 sing 594 n n CAM HAM1 Y01 sing 595 n n CAM HAM2 Y01 sing 596 n n CAL HAL1 Y01 sing 597 n n CAL HAL2 Y01 sing 598 n n OAH HAH Y01 sing 599 n n # _atom_sites.entry_id 8DE4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 CL A 1 1001 1001 CL CL . F 6 NA A 1 1002 1101 NA NA . G 6 NA A 1 1003 1201 NA NA . H 7 B40 A 1 1004 2601 B40 B40 . I 8 Y01 A 1 1005 3101 Y01 CHS . J 8 Y01 A 1 1006 3201 Y01 CHS . K 9 LMT A 1 1007 3301 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . I 8 144.543 131.874 130.511 1 70.64 ? CAA Y01 1005 A 1 HETATM 2 C CBA Y01 . . . I 8 145.904 132.562 130.685 1 70.66 ? CBA Y01 1005 A 1 HETATM 3 C CAB Y01 . . . I 8 146.085 133.084 132.113 1 72.71 ? CAB Y01 1005 A 1 HETATM 4 C CAN Y01 . . . I 8 146.096 133.693 129.65 1 71.52 ? CAN Y01 1005 A 1 HETATM 5 C CAJ Y01 . . . I 8 147.21 133.363 128.627 1 73.2 ? CAJ Y01 1005 A 1 HETATM 6 C CAO Y01 . . . I 8 148.613 133.784 129.134 1 76.4 ? CAO Y01 1005 A 1 HETATM 7 C CBB Y01 . . . I 8 149.655 133.884 128.006 1 73.5 ? CBB Y01 1005 A 1 HETATM 8 C CAC Y01 . . . I 8 149.479 132.708 127.075 1 70.75 ? CAC Y01 1005 A 1 HETATM 9 C CBE Y01 . . . I 8 149.482 135.215 127.228 1 74.6 ? CBE Y01 1005 A 1 HETATM 10 C CAP Y01 . . . I 8 149.283 136.274 128.099 1 77.44 ? CAP Y01 1005 A 1 HETATM 11 C CAQ Y01 . . . I 8 150.162 137.527 127.525 1 73.4 ? CAQ Y01 1005 A 1 HETATM 12 C CBG Y01 . . . I 8 150.575 136.974 126.138 1 75.45 ? CBG Y01 1005 A 1 HETATM 13 C CBI Y01 . . . I 8 150.826 135.625 126.425 1 75.23 ? CBI Y01 1005 A 1 HETATM 14 C CAE Y01 . . . I 8 151.976 135.508 127.431 1 73.7 ? CAE Y01 1005 A 1 HETATM 15 C CAU Y01 . . . I 8 151.355 134.843 124.988 1 74.29 ? CAU Y01 1005 A 1 HETATM 16 C CAS Y01 . . . I 8 152.52 135.529 124.407 1 72.08 ? CAS Y01 1005 A 1 HETATM 17 C CBF Y01 . . . I 8 152.346 137.01 124.273 1 74.14 ? CBF Y01 1005 A 1 HETATM 18 C CBD Y01 . . . I 8 151.884 137.695 125.648 1 71.48 ? CBD Y01 1005 A 1 HETATM 19 C CAK Y01 . . . I 8 151.71 139.233 125.543 1 67.76 ? CAK Y01 1005 A 1 HETATM 20 C CAI Y01 . . . I 8 152.967 139.96 124.804 1 72.47 ? CAI Y01 1005 A 1 HETATM 21 C CAZ Y01 . . . I 8 153.361 139.266 123.468 1 77.06 ? CAZ Y01 1005 A 1 HETATM 22 C CAV Y01 . . . I 8 154.543 139.974 122.784 1 70.16 ? CAV Y01 1005 A 1 HETATM 23 C CBH Y01 . . . I 8 153.61 137.698 123.66 1 75.32 ? CBH Y01 1005 A 1 HETATM 24 C CAD Y01 . . . I 8 154.751 137.528 124.657 1 74.31 ? CAD Y01 1005 A 1 HETATM 25 C CAT Y01 . . . I 8 154.038 137.009 122.366 1 70.32 ? CAT Y01 1005 A 1 HETATM 26 C CAR Y01 . . . I 8 155.24 137.748 121.663 1 69 ? CAR Y01 1005 A 1 HETATM 27 C CBC Y01 . . . I 8 154.941 139.273 121.44 1 71.9 ? CBC Y01 1005 A 1 HETATM 28 O OAW Y01 . . . I 8 156.059 139.883 120.927 1 81.69 ? OAW Y01 1005 A 1 HETATM 29 C CAY Y01 . . . I 8 156.284 139.632 119.559 1 75.61 ? CAY Y01 1005 A 1 HETATM 30 O OAG Y01 . . . I 8 157.023 138.766 119.228 1 68.92 ? OAG Y01 1005 A 1 HETATM 31 C CAM Y01 . . . I 8 155.582 140.482 118.488 1 73.8 ? CAM Y01 1005 A 1 HETATM 32 C CAL Y01 . . . I 8 156.548 141.456 117.809 1 74.79 ? CAL Y01 1005 A 1 HETATM 33 C CAX Y01 . . . I 8 156.837 141.08 116.354 1 73.95 ? CAX Y01 1005 A 1 HETATM 34 O OAH Y01 . . . I 8 157.641 140.146 116.094 1 73.05 ? OAH Y01 1005 A 1 HETATM 35 O OAF Y01 . . . I 8 156.273 141.703 115.417 1 73.32 ? OAF Y01 1005 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 377 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #