data_8DEA # _model_server_result.job_id Ty0qWKJt9hhwVAQEk8Qgnw _model_server_result.datetime_utc '2024-11-06 03:11:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dea # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 8DEA # _exptl.entry_id 8DEA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.295 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(3-acetylphenyl)acetyl]-N-(6-bromopyridin-2-yl)-L-prolinamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DEA _cell.length_a 44.898 _cell.length_b 73.032 _cell.length_c 240.864 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DEA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,K 1 1 B,F,L 2 1 C,G,H,I,M 3 1 D,J,N 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 42 A CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 A SG CYS 123 A CYS 123 1_555 A SG CYS 189 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? disulf ? disulf3 A SG CYS 154 A CYS 154 1_555 A SG CYS 170 A CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf4 A SG CYS 179 A CYS 179 1_555 A SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 B SG CYS 26 B CYS 26 1_555 B SG CYS 42 B CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? disulf ? disulf6 B SG CYS 123 B CYS 123 1_555 B SG CYS 189 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf7 B SG CYS 154 B CYS 154 1_555 B SG CYS 170 B CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf8 B SG CYS 179 B CYS 179 1_555 B SG CYS 204 B CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf9 C SG CYS 26 C CYS 26 1_555 C SG CYS 42 C CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf10 C SG CYS 123 C CYS 123 1_555 C SG CYS 189 C CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf11 C SG CYS 154 C CYS 154 1_555 C SG CYS 170 C CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 C SG CYS 179 C CYS 179 1_555 C SG CYS 204 C CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf13 D SG CYS 26 D CYS 26 1_555 D SG CYS 42 D CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 D SG CYS 123 D CYS 123 1_555 D SG CYS 189 D CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf15 D SG CYS 154 D CYS 154 1_555 D SG CYS 170 D CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf16 D SG CYS 179 D CYS 179 1_555 D SG CYS 204 D CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? # _chem_comp.formula 'C20 H20 Br N3 O3' _chem_comp.formula_weight 430.295 _chem_comp.id R7X _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(3-acetylphenyl)acetyl]-N-(6-bromopyridin-2-yl)-L-prolinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR20 C19 R7X sing 267 n n C18 C19 R7X doub 268 n y C18 C17 R7X sing 269 n y C19 N21 R7X sing 270 n y C17 C16 R7X doub 271 n y N21 C15 R7X doub 272 n y O27 C25 R7X doub 273 n n C23 C24 R7X doub 274 n y C23 C22 R7X sing 275 n y C16 C15 R7X sing 276 n y C15 N14 R7X sing 277 n n C25 C22 R7X sing 278 n n C25 C26 R7X sing 279 n n C24 C6 R7X sing 280 n y C22 C4 R7X doub 281 n y C6 C5 R7X doub 282 n y N14 C11 R7X sing 283 n n O13 C3 R7X doub 284 n n C4 C5 R7X sing 285 n y O10 C11 R7X doub 286 n n C5 C8 R7X sing 287 n n C11 C12 R7X sing 288 n n C3 C8 R7X sing 289 n n C3 N7 R7X sing 290 n n C12 N7 R7X sing 291 n n C12 C9 R7X sing 292 n n N7 C2 R7X sing 293 n n C9 C1 R7X sing 294 n n C2 C1 R7X sing 295 n n C4 H1 R7X sing 296 n n C6 H2 R7X sing 297 n n C8 H3 R7X sing 298 n n C8 H4 R7X sing 299 n n C9 H5 R7X sing 300 n n C9 H6 R7X sing 301 n n C12 H7 R7X sing 302 n n C1 H8 R7X sing 303 n n C1 H9 R7X sing 304 n n C2 H10 R7X sing 305 n n C2 H11 R7X sing 306 n n C16 H12 R7X sing 307 n n C17 H13 R7X sing 308 n n C18 H14 R7X sing 309 n n C26 H15 R7X sing 310 n n C26 H16 R7X sing 311 n n C26 H17 R7X sing 312 n n C23 H18 R7X sing 313 n n C24 H19 R7X sing 314 n n N14 H20 R7X sing 315 n n # _atom_sites.entry_id 8DEA _atom_sites.fract_transf_matrix[1][1] 0.022273 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013693 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004152 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 R7X A 1 301 516 R7X 8RW . F 2 R7X B 1 301 516 R7X 8RW . G 2 R7X C 1 301 516 R7X 8RW . H 3 GOL C 1 302 617 GOL GOL . I 3 GOL C 1 303 718 GOL GOL . J 2 R7X D 1 301 516 R7X 8RW . K 4 HOH A 1 401 19 HOH HOH . K 4 HOH A 2 402 47 HOH HOH . K 4 HOH A 3 403 89 HOH HOH . K 4 HOH A 4 404 56 HOH HOH . K 4 HOH A 5 405 91 HOH HOH . K 4 HOH A 6 406 93 HOH HOH . K 4 HOH A 7 407 100 HOH HOH . K 4 HOH A 8 408 37 HOH HOH . K 4 HOH A 9 409 84 HOH HOH . K 4 HOH A 10 410 99 HOH HOH . K 4 HOH A 11 411 74 HOH HOH . K 4 HOH A 12 412 71 HOH HOH . K 4 HOH A 13 413 44 HOH HOH . K 4 HOH A 14 414 69 HOH HOH . K 4 HOH A 15 415 43 HOH HOH . K 4 HOH A 16 416 80 HOH HOH . K 4 HOH A 17 417 37 HOH HOH . K 4 HOH A 18 418 48 HOH HOH . K 4 HOH A 19 419 76 HOH HOH . K 4 HOH A 20 420 60 HOH HOH . K 4 HOH A 21 421 45 HOH HOH . L 4 HOH B 1 401 65 HOH HOH . L 4 HOH B 2 402 41 HOH HOH . L 4 HOH B 3 403 46 HOH HOH . L 4 HOH B 4 404 55 HOH HOH . L 4 HOH B 5 405 34 HOH HOH . L 4 HOH B 6 406 52 HOH HOH . L 4 HOH B 7 407 23 HOH HOH . L 4 HOH B 8 408 92 HOH HOH . L 4 HOH B 9 409 40 HOH HOH . L 4 HOH B 10 410 59 HOH HOH . L 4 HOH B 11 411 63 HOH HOH . L 4 HOH B 12 412 51 HOH HOH . L 4 HOH B 13 413 101 HOH HOH . L 4 HOH B 14 414 64 HOH HOH . L 4 HOH B 15 415 25 HOH HOH . L 4 HOH B 16 416 82 HOH HOH . L 4 HOH B 17 417 29 HOH HOH . L 4 HOH B 18 418 79 HOH HOH . L 4 HOH B 19 419 90 HOH HOH . L 4 HOH B 20 420 42 HOH HOH . L 4 HOH B 21 421 28 HOH HOH . L 4 HOH B 22 422 33 HOH HOH . L 4 HOH B 23 423 32 HOH HOH . L 4 HOH B 24 424 16 HOH HOH . L 4 HOH B 25 425 26 HOH HOH . L 4 HOH B 26 426 54 HOH HOH . L 4 HOH B 27 427 104 HOH HOH . M 4 HOH C 1 401 108 HOH HOH . M 4 HOH C 2 402 73 HOH HOH . M 4 HOH C 3 403 59 HOH HOH . M 4 HOH C 4 404 30 HOH HOH . M 4 HOH C 5 405 83 HOH HOH . M 4 HOH C 6 406 65 HOH HOH . M 4 HOH C 7 407 87 HOH HOH . M 4 HOH C 8 408 20 HOH HOH . M 4 HOH C 9 409 57 HOH HOH . M 4 HOH C 10 410 102 HOH HOH . M 4 HOH C 11 411 66 HOH HOH . M 4 HOH C 12 412 31 HOH HOH . M 4 HOH C 13 413 49 HOH HOH . M 4 HOH C 14 414 38 HOH HOH . M 4 HOH C 15 415 17 HOH HOH . M 4 HOH C 16 416 95 HOH HOH . M 4 HOH C 17 417 78 HOH HOH . M 4 HOH C 18 418 24 HOH HOH . M 4 HOH C 19 419 39 HOH HOH . M 4 HOH C 20 420 106 HOH HOH . M 4 HOH C 21 421 58 HOH HOH . M 4 HOH C 22 422 103 HOH HOH . M 4 HOH C 23 423 21 HOH HOH . M 4 HOH C 24 424 62 HOH HOH . M 4 HOH C 25 425 107 HOH HOH . M 4 HOH C 26 426 77 HOH HOH . N 4 HOH D 1 401 53 HOH HOH . N 4 HOH D 2 402 96 HOH HOH . N 4 HOH D 3 403 72 HOH HOH . N 4 HOH D 4 404 94 HOH HOH . N 4 HOH D 5 405 27 HOH HOH . N 4 HOH D 6 406 85 HOH HOH . N 4 HOH D 7 407 81 HOH HOH . N 4 HOH D 8 408 105 HOH HOH . N 4 HOH D 9 409 61 HOH HOH . N 4 HOH D 10 410 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 R7X . . . G 2 -18.111 2.781 -31.199 1 28.93 0 C4 R7X 301 C 1 HETATM 2 C C5 R7X . . . G 2 -18.845 3.689 -30.446 1 28.13 0 C5 R7X 301 C 1 HETATM 3 C C6 R7X . . . G 2 -18.585 5.032 -30.65 1 27.19 0 C6 R7X 301 C 1 HETATM 4 C C11 R7X . . . G 2 -24.071 4.078 -30.307 1 32.34 0 C11 R7X 301 C 1 HETATM 5 C C8 R7X . . . G 2 -19.783 3.3 -29.459 1 28.08 0 C8 R7X 301 C 1 HETATM 6 C C9 R7X . . . G 2 -24.427 2.693 -28.31 1 32.43 0 C9 R7X 301 C 1 HETATM 7 C C12 R7X . . . G 2 -23.669 2.897 -29.595 1 31.56 0 C12 R7X 301 C 1 HETATM 8 C C3 R7X . . . G 2 -21.177 3.031 -30.072 1 28.45 0 C3 R7X 301 C 1 HETATM 9 C C1 R7X . . . G 2 -23.334 2.451 -27.223 1 32.92 0 C1 R7X 301 C 1 HETATM 10 C C2 R7X . . . G 2 -22.121 3.224 -27.711 1 32.48 0 C2 R7X 301 C 1 HETATM 11 C C15 R7X . . . G 2 -25.072 4.705 -32.439 1 29.05 0 C15 R7X 301 C 1 HETATM 12 C C16 R7X . . . G 2 -25.212 6.087 -32.284 1 26.99 0 C16 R7X 301 C 1 HETATM 13 C C17 R7X . . . G 2 -25.533 6.858 -33.407 1 26.46 0 C17 R7X 301 C 1 HETATM 14 C C18 R7X . . . G 2 -25.68 6.271 -34.657 1 27.6 0 C18 R7X 301 C 1 HETATM 15 C C19 R7X . . . G 2 -25.541 4.877 -34.788 1 27.61 0 C19 R7X 301 C 1 HETATM 16 C C22 R7X . . . G 2 -17.169 3.205 -32.135 1 29.85 0 C22 R7X 301 C 1 HETATM 17 C C26 R7X . . . G 2 -16.508 0.847 -32.442 1 27.81 0 C26 R7X 301 C 1 HETATM 18 C C25 R7X . . . G 2 -16.409 2.298 -32.889 1 29.07 0 C25 R7X 301 C 1 HETATM 19 O O27 R7X . . . G 2 -15.644 2.648 -33.806 1 28.19 0 O27 R7X 301 C 1 HETATM 20 C C23 R7X . . . G 2 -16.93 4.566 -32.294 1 29.74 0 C23 R7X 301 C 1 HETATM 21 C C24 R7X . . . G 2 -17.638 5.462 -31.553 1 27.79 0 C24 R7X 301 C 1 HETATM 22 O O13 R7X . . . G 2 -21.315 2.903 -31.282 1 27.15 0 O13 R7X 301 C 1 HETATM 23 N N7 R7X . . . G 2 -22.199 3.027 -29.213 1 29.26 0 N7 R7X 301 C 1 HETATM 24 O O10 R7X . . . G 2 -23.681 5.207 -29.932 1 30.86 0 O10 R7X 301 C 1 HETATM 25 N N14 R7X . . . G 2 -24.771 3.798 -31.467 1 31.76 0 N14 R7X 301 C 1 HETATM 26 N N21 R7X . . . G 2 -25.213 4.168 -33.684 1 29.01 0 N21 R7X 301 C 1 HETATM 27 BR BR20 R7X . . . G 2 -25.748 3.974 -36.482 1 31.5 0 BR20 R7X 301 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #