data_8DEA
#
_model_server_result.job_id            asQY-Yn5mPISL30kLQ71yg 
_model_server_result.datetime_utc      '2024-11-06 03:17:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dea 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":301}' 
#
_entry.id    8DEA 
#
_exptl.entry_id    8DEA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              430.295 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-[(3-acetylphenyl)acetyl]-N-(6-bromopyridin-2-yl)-L-prolinamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DEA 
_cell.length_a            44.898 
_cell.length_b            73.032 
_cell.length_c            240.864 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DEA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,K 1 1 
B,F,L 2 1 
C,G,H,I,M 3 1 
D,J,N 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 42 A CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf2 A SG CYS 123 A CYS 123 1_555 A SG CYS 189 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
disulf ? disulf3 A SG CYS 154 A CYS 154 1_555 A SG CYS 170 A CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf4 A SG CYS 179 A CYS 179 1_555 A SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf5 B SG CYS 26 B CYS 26 1_555 B SG CYS 42 B CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
disulf ? disulf6 B SG CYS 123 B CYS 123 1_555 B SG CYS 189 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf7 B SG CYS 154 B CYS 154 1_555 B SG CYS 170 B CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf8 B SG CYS 179 B CYS 179 1_555 B SG CYS 204 B CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
disulf ? disulf9 C SG CYS 26 C CYS 26 1_555 C SG CYS 42 C CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf10 C SG CYS 123 C CYS 123 1_555 C SG CYS 189 C CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf11 C SG CYS 154 C CYS 154 1_555 C SG CYS 170 C CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf12 C SG CYS 179 C CYS 179 1_555 C SG CYS 204 C CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf13 D SG CYS 26 D CYS 26 1_555 D SG CYS 42 D CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf14 D SG CYS 123 D CYS 123 1_555 D SG CYS 189 D CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf15 D SG CYS 154 D CYS 154 1_555 D SG CYS 170 D CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf16 D SG CYS 179 D CYS 179 1_555 D SG CYS 204 D CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
#
_chem_comp.formula           'C20 H20 Br N3 O3' 
_chem_comp.formula_weight    430.295 
_chem_comp.id                R7X 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-[(3-acetylphenyl)acetyl]-N-(6-bromopyridin-2-yl)-L-prolinamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
BR20 C19 R7X sing 267 n n 
C18 C19 R7X doub 268 n y 
C18 C17 R7X sing 269 n y 
C19 N21 R7X sing 270 n y 
C17 C16 R7X doub 271 n y 
N21 C15 R7X doub 272 n y 
O27 C25 R7X doub 273 n n 
C23 C24 R7X doub 274 n y 
C23 C22 R7X sing 275 n y 
C16 C15 R7X sing 276 n y 
C15 N14 R7X sing 277 n n 
C25 C22 R7X sing 278 n n 
C25 C26 R7X sing 279 n n 
C24 C6 R7X sing 280 n y 
C22 C4 R7X doub 281 n y 
C6 C5 R7X doub 282 n y 
N14 C11 R7X sing 283 n n 
O13 C3 R7X doub 284 n n 
C4 C5 R7X sing 285 n y 
O10 C11 R7X doub 286 n n 
C5 C8 R7X sing 287 n n 
C11 C12 R7X sing 288 n n 
C3 C8 R7X sing 289 n n 
C3 N7 R7X sing 290 n n 
C12 N7 R7X sing 291 n n 
C12 C9 R7X sing 292 n n 
N7 C2 R7X sing 293 n n 
C9 C1 R7X sing 294 n n 
C2 C1 R7X sing 295 n n 
C4 H1 R7X sing 296 n n 
C6 H2 R7X sing 297 n n 
C8 H3 R7X sing 298 n n 
C8 H4 R7X sing 299 n n 
C9 H5 R7X sing 300 n n 
C9 H6 R7X sing 301 n n 
C12 H7 R7X sing 302 n n 
C1 H8 R7X sing 303 n n 
C1 H9 R7X sing 304 n n 
C2 H10 R7X sing 305 n n 
C2 H11 R7X sing 306 n n 
C16 H12 R7X sing 307 n n 
C17 H13 R7X sing 308 n n 
C18 H14 R7X sing 309 n n 
C26 H15 R7X sing 310 n n 
C26 H16 R7X sing 311 n n 
C26 H17 R7X sing 312 n n 
C23 H18 R7X sing 313 n n 
C24 H19 R7X sing 314 n n 
N14 H20 R7X sing 315 n n 
#
_atom_sites.entry_id                     8DEA 
_atom_sites.fract_transf_matrix[1][1]    0.022273 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013693 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004152 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 R7X A 1 301 516 R7X 8RW . 
F 2 R7X B 1 301 516 R7X 8RW . 
G 2 R7X C 1 301 516 R7X 8RW . 
H 3 GOL C 1 302 617 GOL GOL . 
I 3 GOL C 1 303 718 GOL GOL . 
J 2 R7X D 1 301 516 R7X 8RW . 
K 4 HOH A 1 401 19 HOH HOH . 
K 4 HOH A 2 402 47 HOH HOH . 
K 4 HOH A 3 403 89 HOH HOH . 
K 4 HOH A 4 404 56 HOH HOH . 
K 4 HOH A 5 405 91 HOH HOH . 
K 4 HOH A 6 406 93 HOH HOH . 
K 4 HOH A 7 407 100 HOH HOH . 
K 4 HOH A 8 408 37 HOH HOH . 
K 4 HOH A 9 409 84 HOH HOH . 
K 4 HOH A 10 410 99 HOH HOH . 
K 4 HOH A 11 411 74 HOH HOH . 
K 4 HOH A 12 412 71 HOH HOH . 
K 4 HOH A 13 413 44 HOH HOH . 
K 4 HOH A 14 414 69 HOH HOH . 
K 4 HOH A 15 415 43 HOH HOH . 
K 4 HOH A 16 416 80 HOH HOH . 
K 4 HOH A 17 417 37 HOH HOH . 
K 4 HOH A 18 418 48 HOH HOH . 
K 4 HOH A 19 419 76 HOH HOH . 
K 4 HOH A 20 420 60 HOH HOH . 
K 4 HOH A 21 421 45 HOH HOH . 
L 4 HOH B 1 401 65 HOH HOH . 
L 4 HOH B 2 402 41 HOH HOH . 
L 4 HOH B 3 403 46 HOH HOH . 
L 4 HOH B 4 404 55 HOH HOH . 
L 4 HOH B 5 405 34 HOH HOH . 
L 4 HOH B 6 406 52 HOH HOH . 
L 4 HOH B 7 407 23 HOH HOH . 
L 4 HOH B 8 408 92 HOH HOH . 
L 4 HOH B 9 409 40 HOH HOH . 
L 4 HOH B 10 410 59 HOH HOH . 
L 4 HOH B 11 411 63 HOH HOH . 
L 4 HOH B 12 412 51 HOH HOH . 
L 4 HOH B 13 413 101 HOH HOH . 
L 4 HOH B 14 414 64 HOH HOH . 
L 4 HOH B 15 415 25 HOH HOH . 
L 4 HOH B 16 416 82 HOH HOH . 
L 4 HOH B 17 417 29 HOH HOH . 
L 4 HOH B 18 418 79 HOH HOH . 
L 4 HOH B 19 419 90 HOH HOH . 
L 4 HOH B 20 420 42 HOH HOH . 
L 4 HOH B 21 421 28 HOH HOH . 
L 4 HOH B 22 422 33 HOH HOH . 
L 4 HOH B 23 423 32 HOH HOH . 
L 4 HOH B 24 424 16 HOH HOH . 
L 4 HOH B 25 425 26 HOH HOH . 
L 4 HOH B 26 426 54 HOH HOH . 
L 4 HOH B 27 427 104 HOH HOH . 
M 4 HOH C 1 401 108 HOH HOH . 
M 4 HOH C 2 402 73 HOH HOH . 
M 4 HOH C 3 403 59 HOH HOH . 
M 4 HOH C 4 404 30 HOH HOH . 
M 4 HOH C 5 405 83 HOH HOH . 
M 4 HOH C 6 406 65 HOH HOH . 
M 4 HOH C 7 407 87 HOH HOH . 
M 4 HOH C 8 408 20 HOH HOH . 
M 4 HOH C 9 409 57 HOH HOH . 
M 4 HOH C 10 410 102 HOH HOH . 
M 4 HOH C 11 411 66 HOH HOH . 
M 4 HOH C 12 412 31 HOH HOH . 
M 4 HOH C 13 413 49 HOH HOH . 
M 4 HOH C 14 414 38 HOH HOH . 
M 4 HOH C 15 415 17 HOH HOH . 
M 4 HOH C 16 416 95 HOH HOH . 
M 4 HOH C 17 417 78 HOH HOH . 
M 4 HOH C 18 418 24 HOH HOH . 
M 4 HOH C 19 419 39 HOH HOH . 
M 4 HOH C 20 420 106 HOH HOH . 
M 4 HOH C 21 421 58 HOH HOH . 
M 4 HOH C 22 422 103 HOH HOH . 
M 4 HOH C 23 423 21 HOH HOH . 
M 4 HOH C 24 424 62 HOH HOH . 
M 4 HOH C 25 425 107 HOH HOH . 
M 4 HOH C 26 426 77 HOH HOH . 
N 4 HOH D 1 401 53 HOH HOH . 
N 4 HOH D 2 402 96 HOH HOH . 
N 4 HOH D 3 403 72 HOH HOH . 
N 4 HOH D 4 404 94 HOH HOH . 
N 4 HOH D 5 405 27 HOH HOH . 
N 4 HOH D 6 406 85 HOH HOH . 
N 4 HOH D 7 407 81 HOH HOH . 
N 4 HOH D 8 408 105 HOH HOH . 
N 4 HOH D 9 409 61 HOH HOH . 
N 4 HOH D 10 410 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 R7X . . . J 2 -4.255 8.934 -56.862 1 35.1 0 C4 R7X 301 D 1 
HETATM 2 C C5 R7X . . . J 2 -3.631 8.021 -56.005 1 32.83 0 C5 R7X 301 D 1 
HETATM 3 C C6 R7X . . . J 2 -3.928 6.653 -56.132 1 32.23 0 C6 R7X 301 D 1 
HETATM 4 C C11 R7X . . . J 2 1.477 7.611 -55.991 1 36.31 0 C11 R7X 301 D 1 
HETATM 5 C C8 R7X . . . J 2 -2.724 8.466 -55.051 1 33.82 0 C8 R7X 301 D 1 
HETATM 6 C C9 R7X . . . J 2 1.955 8.692 -53.854 1 40.02 0 C9 R7X 301 D 1 
HETATM 7 C C12 R7X . . . J 2 1.172 8.719 -55.187 1 38.24 0 C12 R7X 301 D 1 
HETATM 8 C C3 R7X . . . J 2 -1.279 8.517 -55.672 1 35.4 0 C3 R7X 301 D 1 
HETATM 9 C C1 R7X . . . J 2 0.969 9.167 -52.771 1 41.42 0 C1 R7X 301 D 1 
HETATM 10 C C2 R7X . . . J 2 -0.42 8.916 -53.337 1 39.35 0 C2 R7X 301 D 1 
HETATM 11 C C15 R7X . . . J 2 2.561 6.856 -57.955 1 46.21 0 C15 R7X 301 D 1 
HETATM 12 C C16 R7X . . . J 2 2.539 5.453 -57.76 1 42.69 0 C16 R7X 301 D 1 
HETATM 13 C C17 R7X . . . J 2 2.794 4.63 -58.86 1 43.37 0 C17 R7X 301 D 1 
HETATM 14 C C18 R7X . . . J 2 3.06 5.191 -60.125 1 42.59 0 C18 R7X 301 D 1 
HETATM 15 C C19 R7X . . . J 2 3.07 6.582 -60.302 1 43.21 0 C19 R7X 301 D 1 
HETATM 16 C C22 R7X . . . J 2 -5.17 8.542 -57.827 1 33.7 0 C22 R7X 301 D 1 
HETATM 17 C C26 R7X . . . J 2 -5.288 10.925 -58.701 1 37.97 0 C26 R7X 301 D 1 
HETATM 18 C C25 R7X . . . J 2 -5.794 9.459 -58.66 1 35.93 0 C25 R7X 301 D 1 
HETATM 19 O O27 R7X . . . J 2 -6.697 9.104 -59.41 1 36.45 0 O27 R7X 301 D 1 
HETATM 20 C C23 R7X . . . J 2 -5.458 7.171 -57.929 1 35.6 0 C23 R7X 301 D 1 
HETATM 21 C C24 R7X . . . J 2 -4.834 6.228 -57.094 1 33.38 0 C24 R7X 301 D 1 
HETATM 22 O O13 R7X . . . J 2 -1.081 8.332 -56.868 1 35.43 0 O13 R7X 301 D 1 
HETATM 23 N N7 R7X . . . J 2 -0.266 8.684 -54.805 1 36.06 0 N7 R7X 301 D 1 
HETATM 24 O O10 R7X . . . J 2 0.996 6.534 -55.729 1 38.18 0 O10 R7X 301 D 1 
HETATM 25 N N14 R7X . . . J 2 2.292 7.817 -57.034 1 42.65 0 N14 R7X 301 D 1 
HETATM 26 N N21 R7X . . . J 2 2.817 7.35 -59.206 1 48.6 0 N21 R7X 301 D 1 
HETATM 27 BR BR20 R7X . . . J 2 3.432 7.493 -62.074 1 39.37 0 BR20 R7X 301 D 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#