data_8DEA
#
_model_server_result.job_id            VXvQr6xPMTfGH4_utRG86g 
_model_server_result.datetime_utc      '2024-11-06 02:47:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dea 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":303}' 
#
_entry.id    8DEA 
#
_exptl.entry_id    8DEA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DEA 
_cell.length_a            44.898 
_cell.length_b            73.032 
_cell.length_c            240.864 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DEA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,K 1 1 
B,F,L 2 1 
C,G,H,I,M 3 1 
D,J,N 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 42 A CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf2 A SG CYS 123 A CYS 123 1_555 A SG CYS 189 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
disulf ? disulf3 A SG CYS 154 A CYS 154 1_555 A SG CYS 170 A CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf4 A SG CYS 179 A CYS 179 1_555 A SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf5 B SG CYS 26 B CYS 26 1_555 B SG CYS 42 B CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
disulf ? disulf6 B SG CYS 123 B CYS 123 1_555 B SG CYS 189 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf7 B SG CYS 154 B CYS 154 1_555 B SG CYS 170 B CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf8 B SG CYS 179 B CYS 179 1_555 B SG CYS 204 B CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
disulf ? disulf9 C SG CYS 26 C CYS 26 1_555 C SG CYS 42 C CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf10 C SG CYS 123 C CYS 123 1_555 C SG CYS 189 C CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf11 C SG CYS 154 C CYS 154 1_555 C SG CYS 170 C CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf12 C SG CYS 179 C CYS 179 1_555 C SG CYS 204 C CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf13 D SG CYS 26 D CYS 26 1_555 D SG CYS 42 D CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf14 D SG CYS 123 D CYS 123 1_555 D SG CYS 189 D CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf15 D SG CYS 154 D CYS 154 1_555 D SG CYS 170 D CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf16 D SG CYS 179 D CYS 179 1_555 D SG CYS 204 D CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8DEA 
_atom_sites.fract_transf_matrix[1][1]    0.022273 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013693 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004152 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 R7X A 1 301 516 R7X 8RW . 
F 2 R7X B 1 301 516 R7X 8RW . 
G 2 R7X C 1 301 516 R7X 8RW . 
H 3 GOL C 1 302 617 GOL GOL . 
I 3 GOL C 1 303 718 GOL GOL . 
J 2 R7X D 1 301 516 R7X 8RW . 
K 4 HOH A 1 401 19 HOH HOH . 
K 4 HOH A 2 402 47 HOH HOH . 
K 4 HOH A 3 403 89 HOH HOH . 
K 4 HOH A 4 404 56 HOH HOH . 
K 4 HOH A 5 405 91 HOH HOH . 
K 4 HOH A 6 406 93 HOH HOH . 
K 4 HOH A 7 407 100 HOH HOH . 
K 4 HOH A 8 408 37 HOH HOH . 
K 4 HOH A 9 409 84 HOH HOH . 
K 4 HOH A 10 410 99 HOH HOH . 
K 4 HOH A 11 411 74 HOH HOH . 
K 4 HOH A 12 412 71 HOH HOH . 
K 4 HOH A 13 413 44 HOH HOH . 
K 4 HOH A 14 414 69 HOH HOH . 
K 4 HOH A 15 415 43 HOH HOH . 
K 4 HOH A 16 416 80 HOH HOH . 
K 4 HOH A 17 417 37 HOH HOH . 
K 4 HOH A 18 418 48 HOH HOH . 
K 4 HOH A 19 419 76 HOH HOH . 
K 4 HOH A 20 420 60 HOH HOH . 
K 4 HOH A 21 421 45 HOH HOH . 
L 4 HOH B 1 401 65 HOH HOH . 
L 4 HOH B 2 402 41 HOH HOH . 
L 4 HOH B 3 403 46 HOH HOH . 
L 4 HOH B 4 404 55 HOH HOH . 
L 4 HOH B 5 405 34 HOH HOH . 
L 4 HOH B 6 406 52 HOH HOH . 
L 4 HOH B 7 407 23 HOH HOH . 
L 4 HOH B 8 408 92 HOH HOH . 
L 4 HOH B 9 409 40 HOH HOH . 
L 4 HOH B 10 410 59 HOH HOH . 
L 4 HOH B 11 411 63 HOH HOH . 
L 4 HOH B 12 412 51 HOH HOH . 
L 4 HOH B 13 413 101 HOH HOH . 
L 4 HOH B 14 414 64 HOH HOH . 
L 4 HOH B 15 415 25 HOH HOH . 
L 4 HOH B 16 416 82 HOH HOH . 
L 4 HOH B 17 417 29 HOH HOH . 
L 4 HOH B 18 418 79 HOH HOH . 
L 4 HOH B 19 419 90 HOH HOH . 
L 4 HOH B 20 420 42 HOH HOH . 
L 4 HOH B 21 421 28 HOH HOH . 
L 4 HOH B 22 422 33 HOH HOH . 
L 4 HOH B 23 423 32 HOH HOH . 
L 4 HOH B 24 424 16 HOH HOH . 
L 4 HOH B 25 425 26 HOH HOH . 
L 4 HOH B 26 426 54 HOH HOH . 
L 4 HOH B 27 427 104 HOH HOH . 
M 4 HOH C 1 401 108 HOH HOH . 
M 4 HOH C 2 402 73 HOH HOH . 
M 4 HOH C 3 403 59 HOH HOH . 
M 4 HOH C 4 404 30 HOH HOH . 
M 4 HOH C 5 405 83 HOH HOH . 
M 4 HOH C 6 406 65 HOH HOH . 
M 4 HOH C 7 407 87 HOH HOH . 
M 4 HOH C 8 408 20 HOH HOH . 
M 4 HOH C 9 409 57 HOH HOH . 
M 4 HOH C 10 410 102 HOH HOH . 
M 4 HOH C 11 411 66 HOH HOH . 
M 4 HOH C 12 412 31 HOH HOH . 
M 4 HOH C 13 413 49 HOH HOH . 
M 4 HOH C 14 414 38 HOH HOH . 
M 4 HOH C 15 415 17 HOH HOH . 
M 4 HOH C 16 416 95 HOH HOH . 
M 4 HOH C 17 417 78 HOH HOH . 
M 4 HOH C 18 418 24 HOH HOH . 
M 4 HOH C 19 419 39 HOH HOH . 
M 4 HOH C 20 420 106 HOH HOH . 
M 4 HOH C 21 421 58 HOH HOH . 
M 4 HOH C 22 422 103 HOH HOH . 
M 4 HOH C 23 423 21 HOH HOH . 
M 4 HOH C 24 424 62 HOH HOH . 
M 4 HOH C 25 425 107 HOH HOH . 
M 4 HOH C 26 426 77 HOH HOH . 
N 4 HOH D 1 401 53 HOH HOH . 
N 4 HOH D 2 402 96 HOH HOH . 
N 4 HOH D 3 403 72 HOH HOH . 
N 4 HOH D 4 404 94 HOH HOH . 
N 4 HOH D 5 405 27 HOH HOH . 
N 4 HOH D 6 406 85 HOH HOH . 
N 4 HOH D 7 407 81 HOH HOH . 
N 4 HOH D 8 408 105 HOH HOH . 
N 4 HOH D 9 409 61 HOH HOH . 
N 4 HOH D 10 410 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 3 -12.116 -12.891 -18.492 1 101.86 0 C1 GOL 303 C 1 
HETATM 2 O O1 GOL . . . I 3 -12.638 -12.628 -17.185 1 99.78 0 O1 GOL 303 C 1 
HETATM 3 C C2 GOL . . . I 3 -12.264 -14.36 -18.862 1 106.97 0 C2 GOL 303 C 1 
HETATM 4 O O2 GOL . . . I 3 -13.357 -14.521 -19.783 1 112.68 0 O2 GOL 303 C 1 
HETATM 5 C C3 GOL . . . I 3 -10.998 -14.964 -19.462 1 108.33 0 C3 GOL 303 C 1 
HETATM 6 O O3 GOL . . . I 3 -11.195 -16.34 -19.812 1 111.14 0 O3 GOL 303 C 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#