data_8DEL # _model_server_result.job_id vh_b9awdGbcWrTOe5g2GqA _model_server_result.datetime_utc '2024-10-13 22:25:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8del # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":203}' # _entry.id 8DEL # _exptl.entry_id 8DEL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.69 _cell.angle_gamma 90 _cell.entry_id 8DEL _cell.length_a 43.778 _cell.length_b 77.076 _cell.length_c 92.653 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DEL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 73 A HIS 73 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc2 A NE2 HIS 77 A HIS 77 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc3 D ZN ZN . A ZN 201 1_555 B NE2 HIS 73 B HIS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc4 D ZN ZN . A ZN 201 1_555 B NE2 HIS 77 B HIS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc5 D ZN ZN . A ZN 201 1_555 C NE2 HIS 73 C HIS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc6 E MG MG . A MG 202 1_555 G O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8DEL _atom_sites.fract_transf_matrix[1][1] 0.022843 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003491 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012974 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ZN A 1 201 1 ZN ZN . E 3 MG A 1 202 1 MG MG . F 3 MG A 1 203 2 MG MG . G 4 HOH A 1 301 108 HOH HOH . G 4 HOH A 2 302 101 HOH HOH . G 4 HOH A 3 303 29 HOH HOH . G 4 HOH A 4 304 58 HOH HOH . G 4 HOH A 5 305 32 HOH HOH . G 4 HOH A 6 306 23 HOH HOH . G 4 HOH A 7 307 13 HOH HOH . G 4 HOH A 8 308 47 HOH HOH . G 4 HOH A 9 309 45 HOH HOH . G 4 HOH A 10 310 93 HOH HOH . G 4 HOH A 11 311 111 HOH HOH . G 4 HOH A 12 312 1 HOH HOH . G 4 HOH A 13 313 20 HOH HOH . G 4 HOH A 14 314 104 HOH HOH . G 4 HOH A 15 315 41 HOH HOH . G 4 HOH A 16 316 17 HOH HOH . G 4 HOH A 17 317 96 HOH HOH . G 4 HOH A 18 318 51 HOH HOH . G 4 HOH A 19 319 7 HOH HOH . G 4 HOH A 20 320 102 HOH HOH . G 4 HOH A 21 321 38 HOH HOH . G 4 HOH A 22 322 5 HOH HOH . G 4 HOH A 23 323 72 HOH HOH . G 4 HOH A 24 324 100 HOH HOH . G 4 HOH A 25 325 31 HOH HOH . G 4 HOH A 26 326 80 HOH HOH . G 4 HOH A 27 327 25 HOH HOH . G 4 HOH A 28 328 112 HOH HOH . G 4 HOH A 29 329 62 HOH HOH . G 4 HOH A 30 330 114 HOH HOH . G 4 HOH A 31 331 113 HOH HOH . G 4 HOH A 32 332 34 HOH HOH . H 4 HOH B 1 201 105 HOH HOH . H 4 HOH B 2 202 61 HOH HOH . H 4 HOH B 3 203 87 HOH HOH . H 4 HOH B 4 204 99 HOH HOH . H 4 HOH B 5 205 90 HOH HOH . H 4 HOH B 6 206 106 HOH HOH . H 4 HOH B 7 207 82 HOH HOH . H 4 HOH B 8 208 60 HOH HOH . H 4 HOH B 9 209 92 HOH HOH . H 4 HOH B 10 210 83 HOH HOH . H 4 HOH B 11 211 39 HOH HOH . H 4 HOH B 12 212 4 HOH HOH . H 4 HOH B 13 213 115 HOH HOH . H 4 HOH B 14 214 10 HOH HOH . H 4 HOH B 15 215 95 HOH HOH . H 4 HOH B 16 216 59 HOH HOH . H 4 HOH B 17 217 85 HOH HOH . H 4 HOH B 18 218 77 HOH HOH . H 4 HOH B 19 219 35 HOH HOH . H 4 HOH B 20 220 53 HOH HOH . H 4 HOH B 21 221 88 HOH HOH . H 4 HOH B 22 222 56 HOH HOH . H 4 HOH B 23 223 27 HOH HOH . H 4 HOH B 24 224 97 HOH HOH . H 4 HOH B 25 225 63 HOH HOH . H 4 HOH B 26 226 52 HOH HOH . H 4 HOH B 27 227 84 HOH HOH . H 4 HOH B 28 228 110 HOH HOH . H 4 HOH B 29 229 98 HOH HOH . H 4 HOH B 30 230 6 HOH HOH . H 4 HOH B 31 231 70 HOH HOH . H 4 HOH B 32 232 40 HOH HOH . H 4 HOH B 33 233 14 HOH HOH . H 4 HOH B 34 234 8 HOH HOH . H 4 HOH B 35 235 9 HOH HOH . H 4 HOH B 36 236 94 HOH HOH . H 4 HOH B 37 237 50 HOH HOH . H 4 HOH B 38 238 16 HOH HOH . H 4 HOH B 39 239 69 HOH HOH . H 4 HOH B 40 240 24 HOH HOH . H 4 HOH B 41 241 107 HOH HOH . H 4 HOH B 42 242 28 HOH HOH . H 4 HOH B 43 243 57 HOH HOH . H 4 HOH B 44 244 44 HOH HOH . H 4 HOH B 45 245 103 HOH HOH . I 4 HOH C 1 201 79 HOH HOH . I 4 HOH C 2 202 81 HOH HOH . I 4 HOH C 3 203 66 HOH HOH . I 4 HOH C 4 204 71 HOH HOH . I 4 HOH C 5 205 68 HOH HOH . I 4 HOH C 6 206 30 HOH HOH . I 4 HOH C 7 207 2 HOH HOH . I 4 HOH C 8 208 18 HOH HOH . I 4 HOH C 9 209 12 HOH HOH . I 4 HOH C 10 210 43 HOH HOH . I 4 HOH C 11 211 26 HOH HOH . I 4 HOH C 12 212 89 HOH HOH . I 4 HOH C 13 213 42 HOH HOH . I 4 HOH C 14 214 86 HOH HOH . I 4 HOH C 15 215 64 HOH HOH . I 4 HOH C 16 216 78 HOH HOH . I 4 HOH C 17 217 37 HOH HOH . I 4 HOH C 18 218 36 HOH HOH . I 4 HOH C 19 219 19 HOH HOH . I 4 HOH C 20 220 75 HOH HOH . I 4 HOH C 21 221 55 HOH HOH . I 4 HOH C 22 222 109 HOH HOH . I 4 HOH C 23 223 11 HOH HOH . I 4 HOH C 24 224 74 HOH HOH . I 4 HOH C 25 225 65 HOH HOH . I 4 HOH C 26 226 73 HOH HOH . I 4 HOH C 27 227 76 HOH HOH . I 4 HOH C 28 228 48 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 4.431 _atom_site.Cartn_y 4.11 _atom_site.Cartn_z 20.106 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 64.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #