data_8DEQ # _model_server_result.job_id x0fazoqYMehiZEu_DeCrlA _model_server_result.datetime_utc '2024-12-01 08:53:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8deq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":501}' # _entry.id 8DEQ # _exptl.entry_id 8DEQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 49 A CYS 49 1_555 A SG CYS 114 A CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 62 A CYS 62 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 63 A CYS 63 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 A SG CYS 259 A CYS 259 1_555 A SG CYS 271 A CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 A SG CYS 301 A CYS 301 1_555 A SG CYS 376 A CYS 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 306 A CYS 306 1_555 A SG CYS 380 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 A SG CYS 328 A CYS 328 1_555 A SG CYS 370 A CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 B SG CYS 49 B CYS 49 1_555 B SG CYS 114 B CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 B SG CYS 62 B CYS 62 1_555 B SG CYS 94 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf10 B SG CYS 63 B CYS 63 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf11 B SG CYS 259 B CYS 259 1_555 B SG CYS 271 B CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 B SG CYS 301 B CYS 301 1_555 B SG CYS 376 B CYS 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf13 B SG CYS 306 B CYS 306 1_555 B SG CYS 380 B CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf14 B SG CYS 328 B CYS 328 1_555 B SG CYS 370 B CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf15 C SG CYS 49 C CYS 49 1_555 C SG CYS 114 C CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf16 C SG CYS 62 C CYS 62 1_555 C SG CYS 94 C CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf17 C SG CYS 63 C CYS 63 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf18 C SG CYS 259 C CYS 259 1_555 C SG CYS 271 C CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf19 C SG CYS 301 C CYS 301 1_555 C SG CYS 376 C CYS 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf20 C SG CYS 306 C CYS 306 1_555 C SG CYS 380 C CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf21 C SG CYS 328 C CYS 328 1_555 C SG CYS 370 C CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf22 D SG CYS 49 D CYS 49 1_555 D SG CYS 114 D CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf23 D SG CYS 62 D CYS 62 1_555 D SG CYS 94 D CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf24 D SG CYS 63 D CYS 63 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf25 D SG CYS 259 D CYS 259 1_555 D SG CYS 271 D CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf26 D SG CYS 301 D CYS 301 1_555 D SG CYS 376 D CYS 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf27 D SG CYS 306 D CYS 306 1_555 D SG CYS 380 D CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf28 D SG CYS 328 D CYS 328 1_555 D SG CYS 370 D CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf29 E SG CYS 49 E CYS 49 1_555 E SG CYS 114 E CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf30 E SG CYS 62 E CYS 62 1_555 E SG CYS 94 E CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf31 E SG CYS 63 E CYS 63 1_555 E SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf32 E SG CYS 259 E CYS 259 1_555 E SG CYS 271 E CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf33 E SG CYS 301 E CYS 301 1_555 E SG CYS 376 E CYS 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf34 E SG CYS 306 E CYS 306 1_555 E SG CYS 380 E CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf35 E SG CYS 328 E CYS 328 1_555 E SG CYS 370 E CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf36 F SG CYS 49 F CYS 49 1_555 F SG CYS 114 F CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf37 F SG CYS 62 F CYS 62 1_555 F SG CYS 94 F CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf38 F SG CYS 63 F CYS 63 1_555 F SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf39 F SG CYS 259 F CYS 259 1_555 F SG CYS 271 F CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf40 F SG CYS 301 F CYS 301 1_555 F SG CYS 376 F CYS 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf41 F SG CYS 306 F CYS 306 1_555 F SG CYS 380 F CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf42 F SG CYS 328 F CYS 328 1_555 F SG CYS 370 F CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 134 A ASN 134 1_555 I C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 B ND2 ASN 134 B ASN 134 1_555 J C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale3 C ND2 ASN 134 C ASN 134 1_555 K C1 NAG . C NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 D ND2 ASN 134 D ASN 134 1_555 L C1 NAG . D NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale5 E ND2 ASN 134 E ASN 134 1_555 M C1 NAG . E NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale6 F ND2 ASN 134 F ASN 134 1_555 N C1 NAG . F NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8DEQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 NAG A 1 501 403 NAG NAG . J 4 NAG B 1 501 403 NAG NAG . K 4 NAG C 1 501 403 NAG NAG . L 4 NAG D 1 501 403 NAG NAG . M 4 NAG E 1 501 403 NAG NAG . N 4 NAG F 1 501 403 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . N 4 153.429 106.739 155.604 1 50 ? C1 NAG 501 F 1 HETATM 2 C C2 NAG . . . N 4 152.155 107.573 155.583 1 50 ? C2 NAG 501 F 1 HETATM 3 C C3 NAG . . . N 4 151.169 106.943 154.617 1 50 ? C3 NAG 501 F 1 HETATM 4 C C4 NAG . . . N 4 151.816 106.864 153.244 1 50 ? C4 NAG 501 F 1 HETATM 5 C C5 NAG . . . N 4 153.103 106.053 153.339 1 50 ? C5 NAG 501 F 1 HETATM 6 C C6 NAG . . . N 4 153.834 105.983 152.002 1 50 ? C6 NAG 501 F 1 HETATM 7 C C7 NAG . . . N 4 151.674 108.788 157.624 1 50 ? C7 NAG 501 F 1 HETATM 8 C C8 NAG . . . N 4 150.385 109.493 157.919 1 50 ? C8 NAG 501 F 1 HETATM 9 N N2 NAG . . . N 4 151.565 107.675 156.903 1 50 ? N2 NAG 501 F 1 HETATM 10 O O3 NAG . . . N 4 149.983 107.741 154.55 1 50 ? O3 NAG 501 F 1 HETATM 11 O O4 NAG . . . N 4 150.898 106.25 152.334 1 50 ? O4 NAG 501 F 1 HETATM 12 O O5 NAG . . . N 4 153.97 106.672 154.286 1 50 ? O5 NAG 501 F 1 HETATM 13 O O6 NAG . . . N 4 153.074 105.228 151.052 1 50 ? O6 NAG 501 F 1 HETATM 14 O O7 NAG . . . N 4 152.747 109.212 158.019 1 50 ? O7 NAG 501 F 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 516 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 14 #