data_8DFZ # _model_server_result.job_id oceAEYKR5FFkWeiHMmSKbw _model_server_result.datetime_utc '2024-10-20 19:11:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dfz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 8DFZ # _exptl.entry_id 8DFZ _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DFZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DFZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 5 1_555 A SG CYS 28 A CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf2 A SG CYS 12 A CYS 12 1_555 A SG CYS 21 A CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? covale ? covale1 A C ASP 17 A ASP 17 1_555 A N EW6 18 A EW6 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale2 A C EW6 18 A EW6 18 1_555 A N GLY 19 A GLY 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale3 A OG EW6 18 A EW6 18 1_555 B C1 NAG . A NAG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale4 A SG CYS 43 A CYS 43 1_555 C C1 NAG . A NAG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 172 n n C1 O1 NAG sing 173 n n C1 O5 NAG sing 174 n n C1 H1 NAG sing 175 n n C2 C3 NAG sing 176 n n C2 N2 NAG sing 177 n n C2 H2 NAG sing 178 n n C3 C4 NAG sing 179 n n C3 O3 NAG sing 180 n n C3 H3 NAG sing 181 n n C4 C5 NAG sing 182 n n C4 O4 NAG sing 183 n n C4 H4 NAG sing 184 n n C5 C6 NAG sing 185 n n C5 O5 NAG sing 186 n n C5 H5 NAG sing 187 n n C6 O6 NAG sing 188 n n C6 H61 NAG sing 189 n n C6 H62 NAG sing 190 n n C7 C8 NAG sing 191 n n C7 N2 NAG sing 192 n n C7 O7 NAG doub 193 n n C8 H81 NAG sing 194 n n C8 H82 NAG sing 195 n n C8 H83 NAG sing 196 n n N2 HN2 NAG sing 197 n n O1 HO1 NAG sing 198 n n O3 HO3 NAG sing 199 n n O4 HO4 NAG sing 200 n n O6 HO6 NAG sing 201 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8DFZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 101 44 NAG NAG . C 2 NAG A 1 102 45 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 0.159 5.291 -8.69 1 0 ? C1 NAG 101 A 1 HETATM 2 C C2 NAG . . . B 2 1.491 5.512 -9.461 1 0 ? C2 NAG 101 A 1 HETATM 3 C C3 NAG . . . B 2 1.188 6.096 -10.848 1 0 ? C3 NAG 101 A 1 HETATM 4 C C4 NAG . . . B 2 0.235 5.181 -11.616 1 0 ? C4 NAG 101 A 1 HETATM 5 C C5 NAG . . . B 2 -1.084 4.971 -10.853 1 0 ? C5 NAG 101 A 1 HETATM 6 C C6 NAG . . . B 2 -1.994 3.921 -11.509 1 0 ? C6 NAG 101 A 1 HETATM 7 C C7 NAG . . . B 2 3.537 6.023 -8.211 1 0 ? C7 NAG 101 A 1 HETATM 8 C C8 NAG . . . B 2 4.405 7.126 -7.567 1 0 ? C8 NAG 101 A 1 HETATM 9 N N2 NAG . . . B 2 2.366 6.44 -8.714 1 0 ? N2 NAG 101 A 1 HETATM 10 O O3 NAG . . . B 2 2.414 6.207 -11.612 1 0 ? O3 NAG 101 A 1 HETATM 11 O O4 NAG . . . B 2 -0.056 5.826 -12.875 1 0 ? O4 NAG 101 A 1 HETATM 12 O O5 NAG . . . B 2 -0.768 4.466 -9.5 1 0 ? O5 NAG 101 A 1 HETATM 13 O O6 NAG . . . B 2 -2.373 4.377 -12.824 1 0 ? O6 NAG 101 A 1 HETATM 14 O O7 NAG . . . B 2 3.842 4.834 -8.118 1 0 ? O7 NAG 101 A 1 HETATM 15 H H1 NAG . . . B 2 -0.31 6.248 -8.462 1 0 ? H1 NAG 101 A 1 HETATM 16 H H2 NAG . . . B 2 1.997 4.556 -9.592 1 0 ? H2 NAG 101 A 1 HETATM 17 H H3 NAG . . . B 2 0.742 7.086 -10.742 1 0 ? H3 NAG 101 A 1 HETATM 18 H H4 NAG . . . B 2 0.712 4.218 -11.805 1 0 ? H4 NAG 101 A 1 HETATM 19 H H5 NAG . . . B 2 -1.616 5.919 -10.763 1 0 ? H5 NAG 101 A 1 HETATM 20 H H61 NAG . . . B 2 -1.472 2.967 -11.593 1 0 ? H61 NAG 101 A 1 HETATM 21 H H62 NAG . . . B 2 -2.891 3.774 -10.906 1 0 ? H62 NAG 101 A 1 HETATM 22 H H81 NAG . . . B 2 3.924 7.484 -6.655 1 0 ? H81 NAG 101 A 1 HETATM 23 H H82 NAG . . . B 2 4.521 7.958 -8.264 1 0 ? H82 NAG 101 A 1 HETATM 24 H H83 NAG . . . B 2 5.391 6.729 -7.32 1 0 ? H83 NAG 101 A 1 HETATM 25 H HN2 NAG . . . B 2 2.199 7.426 -8.815 1 0 ? HN2 NAG 101 A 1 HETATM 26 H HO3 NAG . . . B 2 2.187 6.389 -12.534 1 0 ? HO3 NAG 101 A 1 HETATM 27 H HO4 NAG . . . B 2 -0.868 5.43 -13.238 1 0 ? HO4 NAG 101 A 1 HETATM 28 H HO6 NAG . . . B 2 -3.018 3.764 -13.193 1 0 ? HO6 NAG 101 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 2527 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #