data_8DFZ # _model_server_result.job_id ioCPZ30ABMDIoTz8Glg6jw _model_server_result.datetime_utc '2024-10-20 19:13:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dfz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":102}' # _entry.id 8DFZ # _exptl.entry_id 8DFZ _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DFZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DFZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 5 1_555 A SG CYS 28 A CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf2 A SG CYS 12 A CYS 12 1_555 A SG CYS 21 A CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? covale ? covale1 A C ASP 17 A ASP 17 1_555 A N EW6 18 A EW6 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale2 A C EW6 18 A EW6 18 1_555 A N GLY 19 A GLY 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale3 A OG EW6 18 A EW6 18 1_555 B C1 NAG . A NAG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale4 A SG CYS 43 A CYS 43 1_555 C C1 NAG . A NAG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 172 n n C1 O1 NAG sing 173 n n C1 O5 NAG sing 174 n n C1 H1 NAG sing 175 n n C2 C3 NAG sing 176 n n C2 N2 NAG sing 177 n n C2 H2 NAG sing 178 n n C3 C4 NAG sing 179 n n C3 O3 NAG sing 180 n n C3 H3 NAG sing 181 n n C4 C5 NAG sing 182 n n C4 O4 NAG sing 183 n n C4 H4 NAG sing 184 n n C5 C6 NAG sing 185 n n C5 O5 NAG sing 186 n n C5 H5 NAG sing 187 n n C6 O6 NAG sing 188 n n C6 H61 NAG sing 189 n n C6 H62 NAG sing 190 n n C7 C8 NAG sing 191 n n C7 N2 NAG sing 192 n n C7 O7 NAG doub 193 n n C8 H81 NAG sing 194 n n C8 H82 NAG sing 195 n n C8 H83 NAG sing 196 n n N2 HN2 NAG sing 197 n n O1 HO1 NAG sing 198 n n O3 HO3 NAG sing 199 n n O4 HO4 NAG sing 200 n n O6 HO6 NAG sing 201 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8DFZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 101 44 NAG NAG . C 2 NAG A 1 102 45 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 2 7.411 15.547 -9.942 1 0 ? C1 NAG 102 A 1 HETATM 2 C C2 NAG . . . C 2 8.338 14.354 -9.531 1 0 ? C2 NAG 102 A 1 HETATM 3 C C3 NAG . . . C 2 7.625 13.282 -8.688 1 0 ? C3 NAG 102 A 1 HETATM 4 C C4 NAG . . . C 2 6.31 12.805 -9.329 1 0 ? C4 NAG 102 A 1 HETATM 5 C C5 NAG . . . C 2 5.633 13.851 -10.235 1 0 ? C5 NAG 102 A 1 HETATM 6 C C6 NAG . . . C 2 4.11 13.718 -10.218 1 0 ? C6 NAG 102 A 1 HETATM 7 C C7 NAG . . . C 2 10.103 13.939 -11.183 1 0 ? C7 NAG 102 A 1 HETATM 8 C C8 NAG . . . C 2 10.567 13.056 -12.362 1 0 ? C8 NAG 102 A 1 HETATM 9 N N2 NAG . . . C 2 8.853 13.704 -10.752 1 0 ? N2 NAG 102 A 1 HETATM 10 O O3 NAG . . . C 2 7.317 13.835 -7.384 1 0 ? O3 NAG 102 A 1 HETATM 11 O O4 NAG . . . C 2 6.614 11.668 -10.167 1 0 ? O4 NAG 102 A 1 HETATM 12 O O5 NAG . . . C 2 5.98 15.197 -9.757 1 0 ? O5 NAG 102 A 1 HETATM 13 O O6 NAG . . . C 2 3.765 12.416 -10.734 1 0 ? O6 NAG 102 A 1 HETATM 14 O O7 NAG . . . C 2 10.786 14.883 -10.782 1 0 ? O7 NAG 102 A 1 HETATM 15 H H1 NAG . . . C 2 7.583 15.797 -10.989 1 0 ? H1 NAG 102 A 1 HETATM 16 H H2 NAG . . . C 2 9.181 14.715 -8.953 1 0 ? H2 NAG 102 A 1 HETATM 17 H H3 NAG . . . C 2 8.291 12.429 -8.546 1 0 ? H3 NAG 102 A 1 HETATM 18 H H4 NAG . . . C 2 5.621 12.489 -8.545 1 0 ? H4 NAG 102 A 1 HETATM 19 H H5 NAG . . . C 2 5.995 13.743 -11.259 1 0 ? H5 NAG 102 A 1 HETATM 20 H H61 NAG . . . C 2 3.73 13.82 -9.202 1 0 ? H61 NAG 102 A 1 HETATM 21 H H62 NAG . . . C 2 3.656 14.488 -10.842 1 0 ? H62 NAG 102 A 1 HETATM 22 H H81 NAG . . . C 2 10.101 12.071 -12.3 1 0 ? H81 NAG 102 A 1 HETATM 23 H H82 NAG . . . C 2 10.287 13.529 -13.304 1 0 ? H82 NAG 102 A 1 HETATM 24 H H83 NAG . . . C 2 11.651 12.934 -12.327 1 0 ? H83 NAG 102 A 1 HETATM 25 H HN2 NAG . . . C 2 8.393 12.849 -11.031 1 0 ? HN2 NAG 102 A 1 HETATM 26 H HO3 NAG . . . C 2 8.113 13.799 -6.819 1 0 ? HO3 NAG 102 A 1 HETATM 27 H HO4 NAG . . . C 2 5.782 11.32 -10.518 1 0 ? HO4 NAG 102 A 1 HETATM 28 H HO6 NAG . . . C 2 2.807 12.325 -10.738 1 0 ? HO6 NAG 102 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 3475 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #