data_8DG0 # _model_server_result.job_id NNitbjwNV2AxTqWUyAmGUg _model_server_result.datetime_utc '2024-10-19 05:28:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dg0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":204}' # _entry.id 8DG0 # _exptl.entry_id 8DG0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.055 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UREA _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.318 _cell.angle_gamma 90 _cell.entry_id 8DG0 _cell.length_a 116.341 _cell.length_b 64.324 _cell.length_c 75.346 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DG0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 30 1_555 A SG CYS 33 A CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf2 B SG CYS 30 B CYS 30 1_555 B SG CYS 33 B CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc1 B NE2 HIS 41 B HIS 41 1_555 H CU CU . B CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc2 B OD2 ASP 44 B ASP 44 1_555 G CU CU . B CU 201 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? # _chem_comp.formula 'C H4 N2 O' _chem_comp.formula_weight 60.055 _chem_comp.id URE _chem_comp.mon_nstd_flag . _chem_comp.name UREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O URE doub 358 n n C N1 URE sing 359 n n C N2 URE sing 360 n n N1 HN11 URE sing 361 n n N1 HN12 URE sing 362 n n N2 HN21 URE sing 363 n n N2 HN22 URE sing 364 n n # _atom_sites.entry_id 8DG0 _atom_sites.fract_transf_matrix[1][1] 0.008595 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00609 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015546 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 URE A 1 201 502 URE URE . D 2 URE A 1 202 503 URE URE . E 2 URE A 1 203 504 URE URE . F 2 URE A 1 204 505 URE URE . G 3 CU B 1 201 201 CU CU . H 3 CU B 1 202 301 CU CU . I 2 URE B 1 203 302 URE URE . J 4 HOH A 1 301 7 HOH HOH . J 4 HOH A 2 302 3 HOH HOH . J 4 HOH A 3 303 10 HOH HOH . J 4 HOH A 4 304 1 HOH HOH . J 4 HOH A 5 305 36 HOH HOH . J 4 HOH A 6 306 11 HOH HOH . J 4 HOH A 7 307 8 HOH HOH . J 4 HOH A 8 308 19 HOH HOH . J 4 HOH A 9 309 17 HOH HOH . J 4 HOH A 10 310 21 HOH HOH . J 4 HOH A 11 311 24 HOH HOH . J 4 HOH A 12 312 37 HOH HOH . J 4 HOH A 13 313 13 HOH HOH . J 4 HOH A 14 314 14 HOH HOH . J 4 HOH A 15 316 39 HOH HOH . K 4 HOH B 1 301 31 HOH HOH . K 4 HOH B 2 302 32 HOH HOH . K 4 HOH B 3 303 15 HOH HOH . K 4 HOH B 4 304 35 HOH HOH . K 4 HOH B 5 305 26 HOH HOH . K 4 HOH B 6 306 16 HOH HOH . K 4 HOH B 7 307 4 HOH HOH . K 4 HOH B 8 308 34 HOH HOH . K 4 HOH B 9 309 29 HOH HOH . K 4 HOH B 10 310 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C URE . . . F 2 38.478 -10.905 29.784 1 47.3 ? C URE 204 A 1 HETATM 2 O O URE . . . F 2 39.719 -11.027 29.956 1 48.97 ? O URE 204 A 1 HETATM 3 N N1 URE . . . F 2 37.826 -9.818 30.2 1 43.61 ? N1 URE 204 A 1 HETATM 4 N N2 URE . . . F 2 37.763 -11.862 29.183 1 46.52 ? N2 URE 204 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #