data_8DG1
#
_model_server_result.job_id            c0mUvnpzeCFh02V8hTQfCQ 
_model_server_result.datetime_utc      '2025-01-10 11:39:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dg1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":204}' 
#
_entry.id    8DG1 
#
_exptl.entry_id    8DG1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    20 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          125.254 
_cell.angle_gamma         90 
_cell.entry_id            8DG1 
_cell.length_a            117.214 
_cell.length_b            63.205 
_cell.length_c            74.848 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DG1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,X 1 1 
B,N,O,P,Q,R,S,T,U,V,W,Y 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 30 A CYS 30 1_555 A SG CYS 33 A CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
disulf ? disulf2 B SG CYS 30 B CYS 30 1_555 B SG CYS 33 B CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc1 B N ALA 1 B ALA 1 1_555 N CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc2 B O ALA 1 B ALA 1 1_555 N CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc3 B OE2 GLU 4 B GLU 4 1_555 N CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc4 B OD1 ASP 44 B ASP 44 1_555 N CU CU . B CU 201 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc5 B OD2 ASP 44 B ASP 44 1_555 N CU CU . B CU 201 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     8DG1 
_atom_sites.fract_transf_matrix[1][1]    0.008531 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00603 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015822 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016361 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DMS A 1 201 1202 DMS DMS . 
D 2 DMS A 1 202 1203 DMS DMS . 
E 2 DMS A 1 203 1204 DMS DMS . 
F 2 DMS A 1 204 1205 DMS DMS . 
G 2 DMS A 1 205 1206 DMS DMS . 
H 2 DMS A 1 206 1207 DMS DMS . 
I 2 DMS A 1 207 1208 DMS DMS . 
J 2 DMS A 1 208 1209 DMS DMS . 
K 2 DMS A 1 209 1210 DMS DMS . 
L 2 DMS A 1 210 1211 DMS DMS . 
M 2 DMS A 1 211 8 DMS DMS . 
N 3 CU B 1 201 201 CU CU . 
O 2 DMS B 1 202 1202 DMS DMS . 
P 2 DMS B 1 203 1203 DMS DMS . 
Q 2 DMS B 1 204 1204 DMS DMS . 
R 2 DMS B 1 205 1 DMS DMS . 
S 2 DMS B 1 206 2 DMS DMS . 
T 2 DMS B 1 207 3 DMS DMS . 
U 2 DMS B 1 208 4 DMS DMS . 
V 2 DMS B 1 209 6 DMS DMS . 
W 2 DMS B 1 210 7 DMS DMS . 
X 4 HOH A 1 301 16 HOH HOH . 
X 4 HOH A 2 302 9 HOH HOH . 
X 4 HOH A 3 303 24 HOH HOH . 
X 4 HOH A 4 304 63 HOH HOH . 
X 4 HOH A 5 305 77 HOH HOH . 
X 4 HOH A 6 306 35 HOH HOH . 
X 4 HOH A 7 307 74 HOH HOH . 
X 4 HOH A 8 308 5 HOH HOH . 
X 4 HOH A 9 309 3 HOH HOH . 
X 4 HOH A 10 310 7 HOH HOH . 
X 4 HOH A 11 311 73 HOH HOH . 
X 4 HOH A 12 312 13 HOH HOH . 
X 4 HOH A 13 313 48 HOH HOH . 
X 4 HOH A 14 314 33 HOH HOH . 
X 4 HOH A 15 315 55 HOH HOH . 
X 4 HOH A 16 316 37 HOH HOH . 
X 4 HOH A 17 317 15 HOH HOH . 
X 4 HOH A 18 318 40 HOH HOH . 
X 4 HOH A 19 319 19 HOH HOH . 
X 4 HOH A 20 320 26 HOH HOH . 
X 4 HOH A 21 321 62 HOH HOH . 
X 4 HOH A 22 322 70 HOH HOH . 
X 4 HOH A 23 323 25 HOH HOH . 
X 4 HOH A 24 324 71 HOH HOH . 
X 4 HOH A 25 325 78 HOH HOH . 
X 4 HOH A 26 326 96 HOH HOH . 
X 4 HOH A 27 327 50 HOH HOH . 
X 4 HOH A 28 328 45 HOH HOH . 
X 4 HOH A 29 329 83 HOH HOH . 
X 4 HOH A 30 330 76 HOH HOH . 
X 4 HOH A 31 331 47 HOH HOH . 
X 4 HOH A 32 332 72 HOH HOH . 
X 4 HOH A 33 333 54 HOH HOH . 
X 4 HOH A 34 334 17 HOH HOH . 
X 4 HOH A 35 335 28 HOH HOH . 
X 4 HOH A 36 336 79 HOH HOH . 
X 4 HOH A 37 337 43 HOH HOH . 
X 4 HOH A 38 338 89 HOH HOH . 
Y 4 HOH B 1 301 80 HOH HOH . 
Y 4 HOH B 2 302 84 HOH HOH . 
Y 4 HOH B 3 303 98 HOH HOH . 
Y 4 HOH B 4 304 4 HOH HOH . 
Y 4 HOH B 5 305 1 HOH HOH . 
Y 4 HOH B 6 306 90 HOH HOH . 
Y 4 HOH B 7 307 23 HOH HOH . 
Y 4 HOH B 8 308 10 HOH HOH . 
Y 4 HOH B 9 309 20 HOH HOH . 
Y 4 HOH B 10 310 44 HOH HOH . 
Y 4 HOH B 11 311 31 HOH HOH . 
Y 4 HOH B 12 312 38 HOH HOH . 
Y 4 HOH B 13 313 6 HOH HOH . 
Y 4 HOH B 14 314 8 HOH HOH . 
Y 4 HOH B 15 315 32 HOH HOH . 
Y 4 HOH B 16 316 39 HOH HOH . 
Y 4 HOH B 17 317 22 HOH HOH . 
Y 4 HOH B 18 318 36 HOH HOH . 
Y 4 HOH B 19 319 29 HOH HOH . 
Y 4 HOH B 20 320 64 HOH HOH . 
Y 4 HOH B 21 321 18 HOH HOH . 
Y 4 HOH B 22 322 41 HOH HOH . 
Y 4 HOH B 23 323 11 HOH HOH . 
Y 4 HOH B 24 324 61 HOH HOH . 
Y 4 HOH B 25 325 14 HOH HOH . 
Y 4 HOH B 26 326 12 HOH HOH . 
Y 4 HOH B 27 327 46 HOH HOH . 
Y 4 HOH B 28 328 53 HOH HOH . 
Y 4 HOH B 29 329 52 HOH HOH . 
Y 4 HOH B 30 330 94 HOH HOH . 
Y 4 HOH B 31 331 56 HOH HOH . 
Y 4 HOH B 32 332 82 HOH HOH . 
Y 4 HOH B 33 333 65 HOH HOH . 
Y 4 HOH B 34 334 34 HOH HOH . 
Y 4 HOH B 35 335 30 HOH HOH . 
Y 4 HOH B 36 336 88 HOH HOH . 
Y 4 HOH B 37 337 27 HOH HOH . 
Y 4 HOH B 38 338 49 HOH HOH . 
Y 4 HOH B 39 339 95 HOH HOH . 
Y 4 HOH B 40 340 99 HOH HOH . 
Y 4 HOH B 41 341 97 HOH HOH . 
Y 4 HOH B 42 342 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . Q 2 15.497 -2.374 12.39 1 65.27 ? S DMS 204 B 1 
HETATM 2 O O DMS . . . Q 2 14.048 -2.072 12.328 1 45.66 ? O DMS 204 B 1 
HETATM 3 C C1 DMS . . . Q 2 16.174 -1.016 13.311 1 59.25 ? C1 DMS 204 B 1 
HETATM 4 C C2 DMS . . . Q 2 15.684 -3.628 13.63 1 49.03 ? C2 DMS 204 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#