data_8DG2
#
_model_server_result.job_id            '_A-JMS4l6Oe82aXIvUTaZA' 
_model_server_result.datetime_utc      '2024-11-16 19:25:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dg2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":901}' 
#
_entry.id    8DG2 
#
_exptl.entry_id    8DG2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          125.253 
_cell.angle_gamma         90 
_cell.entry_id            8DG2 
_cell.length_a            117.246 
_cell.length_b            63.095 
_cell.length_c            74.547 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DG2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,S 1 1 
B,K,L,M,N,O,P,Q,R,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 30 A CYS 30 1_555 A SG CYS 33 A CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
disulf ? disulf2 B SG CYS 30 B CYS 30 1_555 B SG CYS 33 B CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc1 B N ALA 1 B ALA 1 1_555 K CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? 
metalc ? metalc2 B O ALA 1 B ALA 1 1_555 K CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc3 B OE2 GLU 4 B GLU 4 1_555 K CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc4 B OD1 ASP 44 B ASP 44 1_555 K CU CU . B CU 201 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
metalc ? metalc5 B OD2 ASP 44 B ASP 44 1_555 K CU CU . B CU 201 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     8DG2 
_atom_sites.fract_transf_matrix[1][1]    0.008529 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006028 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015849 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016427 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 901 901 GOL GOL . 
D 3 DMS A 1 902 1102 DMS DMS . 
E 3 DMS A 1 903 1103 DMS DMS . 
F 3 DMS A 1 904 1104 DMS DMS . 
G 3 DMS A 1 905 1105 DMS DMS . 
H 3 DMS A 1 906 1106 DMS DMS . 
I 3 DMS A 1 907 1107 DMS DMS . 
J 3 DMS A 1 908 1109 DMS DMS . 
K 4 CU B 1 201 201 CU CU . 
L 3 DMS B 1 202 1004 DMS DMS . 
M 3 DMS B 1 203 1005 DMS DMS . 
N 3 DMS B 1 204 1006 DMS DMS . 
O 3 DMS B 1 205 1007 DMS DMS . 
P 3 DMS B 1 206 1008 DMS DMS . 
Q 3 DMS B 1 207 1009 DMS DMS . 
R 3 DMS B 1 208 1010 DMS DMS . 
S 5 HOH A 1 1001 88 HOH HOH . 
S 5 HOH A 2 1002 23 HOH HOH . 
S 5 HOH A 3 1003 37 HOH HOH . 
S 5 HOH A 4 1004 91 HOH HOH . 
S 5 HOH A 5 1005 57 HOH HOH . 
S 5 HOH A 6 1006 3 HOH HOH . 
S 5 HOH A 7 1007 6 HOH HOH . 
S 5 HOH A 8 1008 28 HOH HOH . 
S 5 HOH A 9 1009 41 HOH HOH . 
S 5 HOH A 10 1010 11 HOH HOH . 
S 5 HOH A 11 1011 94 HOH HOH . 
S 5 HOH A 12 1012 12 HOH HOH . 
S 5 HOH A 13 1013 47 HOH HOH . 
S 5 HOH A 14 1014 32 HOH HOH . 
S 5 HOH A 15 1015 60 HOH HOH . 
S 5 HOH A 16 1016 5 HOH HOH . 
S 5 HOH A 17 1017 81 HOH HOH . 
S 5 HOH A 18 1018 69 HOH HOH . 
S 5 HOH A 19 1019 30 HOH HOH . 
S 5 HOH A 20 1020 36 HOH HOH . 
S 5 HOH A 21 1021 43 HOH HOH . 
S 5 HOH A 22 1022 50 HOH HOH . 
S 5 HOH A 23 1023 40 HOH HOH . 
S 5 HOH A 24 1024 27 HOH HOH . 
S 5 HOH A 25 1025 85 HOH HOH . 
S 5 HOH A 26 1026 70 HOH HOH . 
S 5 HOH A 27 1027 63 HOH HOH . 
S 5 HOH A 28 1028 18 HOH HOH . 
S 5 HOH A 29 1029 80 HOH HOH . 
S 5 HOH A 30 1030 16 HOH HOH . 
S 5 HOH A 31 1031 99 HOH HOH . 
S 5 HOH A 32 1032 84 HOH HOH . 
S 5 HOH A 33 1033 45 HOH HOH . 
S 5 HOH A 34 1034 76 HOH HOH . 
S 5 HOH A 35 1035 42 HOH HOH . 
S 5 HOH A 36 1036 97 HOH HOH . 
S 5 HOH A 37 1037 93 HOH HOH . 
S 5 HOH A 38 1038 87 HOH HOH . 
S 5 HOH A 39 1039 48 HOH HOH . 
S 5 HOH A 40 1040 86 HOH HOH . 
S 5 HOH A 41 1041 82 HOH HOH . 
S 5 HOH A 42 1042 58 HOH HOH . 
S 5 HOH A 43 1043 68 HOH HOH . 
S 5 HOH A 44 1044 55 HOH HOH . 
S 5 HOH A 45 1045 66 HOH HOH . 
S 5 HOH A 46 1046 83 HOH HOH . 
T 5 HOH B 1 301 78 HOH HOH . 
T 5 HOH B 2 302 59 HOH HOH . 
T 5 HOH B 3 303 1 HOH HOH . 
T 5 HOH B 4 304 101 HOH HOH . 
T 5 HOH B 5 305 61 HOH HOH . 
T 5 HOH B 6 306 2 HOH HOH . 
T 5 HOH B 7 307 79 HOH HOH . 
T 5 HOH B 8 308 35 HOH HOH . 
T 5 HOH B 9 309 100 HOH HOH . 
T 5 HOH B 10 310 51 HOH HOH . 
T 5 HOH B 11 311 39 HOH HOH . 
T 5 HOH B 12 312 13 HOH HOH . 
T 5 HOH B 13 313 19 HOH HOH . 
T 5 HOH B 14 314 34 HOH HOH . 
T 5 HOH B 15 315 10 HOH HOH . 
T 5 HOH B 16 316 9 HOH HOH . 
T 5 HOH B 17 317 24 HOH HOH . 
T 5 HOH B 18 318 20 HOH HOH . 
T 5 HOH B 19 319 14 HOH HOH . 
T 5 HOH B 20 320 75 HOH HOH . 
T 5 HOH B 21 321 67 HOH HOH . 
T 5 HOH B 22 322 49 HOH HOH . 
T 5 HOH B 23 323 90 HOH HOH . 
T 5 HOH B 24 324 38 HOH HOH . 
T 5 HOH B 25 325 8 HOH HOH . 
T 5 HOH B 26 326 21 HOH HOH . 
T 5 HOH B 27 327 29 HOH HOH . 
T 5 HOH B 28 328 46 HOH HOH . 
T 5 HOH B 29 329 71 HOH HOH . 
T 5 HOH B 30 330 33 HOH HOH . 
T 5 HOH B 31 331 98 HOH HOH . 
T 5 HOH B 32 332 92 HOH HOH . 
T 5 HOH B 33 333 52 HOH HOH . 
T 5 HOH B 34 334 53 HOH HOH . 
T 5 HOH B 35 335 26 HOH HOH . 
T 5 HOH B 36 336 56 HOH HOH . 
T 5 HOH B 37 337 96 HOH HOH . 
T 5 HOH B 38 338 64 HOH HOH . 
T 5 HOH B 39 339 89 HOH HOH . 
T 5 HOH B 40 340 44 HOH HOH . 
T 5 HOH B 41 341 102 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 20.62 0.771 17.071 1 54.45 ? C1 GOL 901 A 1 
HETATM 2 O O1 GOL . . . C 2 21.705 1.638 17.238 1 57.97 ? O1 GOL 901 A 1 
HETATM 3 C C2 GOL . . . C 2 20.789 0.191 15.663 1 51.64 ? C2 GOL 901 A 1 
HETATM 4 O O2 GOL . . . C 2 19.572 -0.207 15.114 1 58.03 ? O2 GOL 901 A 1 
HETATM 5 C C3 GOL . . . C 2 21.403 1.354 14.902 1 47.21 ? C3 GOL 901 A 1 
HETATM 6 O O3 GOL . . . C 2 21.248 1.083 13.549 1 55.74 ? O3 GOL 901 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           6 
#