data_8DG6 # _model_server_result.job_id D-AYiCcQ1LzwYJrDecS6dg _model_server_result.datetime_utc '2024-11-26 09:24:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dg6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8DG6 # _exptl.entry_id 8DG6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 457.885 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{2-[(2S)-2-{[(3-chloro-2-fluorophenyl)methyl]carbamoyl}pyrrolidin-1-yl]-2-oxoethyl}-1H-indazole-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.312 _cell.angle_gamma 90 _cell.entry_id 8DG6 _cell.length_a 74.507 _cell.length_b 44.955 _cell.length_c 63.417 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DG6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 42 A CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? disulf ? disulf2 A SG CYS 123 A CYS 123 1_555 A SG CYS 189 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 154 A CYS 154 1_555 A SG CYS 170 A CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf4 A SG CYS 179 A CYS 179 1_555 A SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? # _chem_comp.formula 'C22 H21 Cl F N5 O3' _chem_comp.formula_weight 457.885 _chem_comp.id S7X _chem_comp.mon_nstd_flag . _chem_comp.name 1-{2-[(2S)-2-{[(3-chloro-2-fluorophenyl)methyl]carbamoyl}pyrrolidin-1-yl]-2-oxoethyl}-1H-indazole-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C1 S7X sing 254 n n N5 C10 S7X sing 255 n n O3 C10 S7X doub 256 n n C10 C9 S7X sing 257 n n F1 C2 S7X sing 258 n n C1 C2 S7X doub 259 n y C1 C22 S7X sing 260 n y C9 N4 S7X doub 261 n y C9 C11 S7X sing 262 n y C2 C3 S7X sing 263 n y N4 N3 S7X sing 264 n y C22 C21 S7X doub 265 n y O2 C7 S7X doub 266 n n C11 C16 S7X doub 267 n y C11 C12 S7X sing 268 n y N1 C4 S7X sing 269 n n N1 C5 S7X sing 270 n n N3 C8 S7X sing 271 n n N3 C12 S7X sing 272 n y C16 C15 S7X sing 273 n y C6 N2 S7X sing 274 n n C6 C19 S7X sing 275 n n C6 C5 S7X sing 276 n n C3 C4 S7X sing 277 n n C3 C20 S7X doub 278 n y C7 C8 S7X sing 279 n n C7 N2 S7X sing 280 n n N2 C17 S7X sing 281 n n C12 C13 S7X doub 282 n y C19 C18 S7X sing 283 n n C5 O1 S7X doub 284 n n C21 C20 S7X sing 285 n y C18 C17 S7X sing 286 n n C15 C14 S7X doub 287 n y C13 C14 S7X sing 288 n y C13 H1 S7X sing 289 n n C15 H2 S7X sing 290 n n C4 H3 S7X sing 291 n n C4 H4 S7X sing 292 n n C6 H5 S7X sing 293 n n N1 H6 S7X sing 294 n n C8 H7 S7X sing 295 n n C8 H8 S7X sing 296 n n N5 H9 S7X sing 297 n n N5 H10 S7X sing 298 n n C14 H11 S7X sing 299 n n C16 H12 S7X sing 300 n n C17 H13 S7X sing 301 n n C17 H14 S7X sing 302 n n C18 H15 S7X sing 303 n n C18 H16 S7X sing 304 n n C19 H17 S7X sing 305 n n C19 H18 S7X sing 306 n n C20 H19 S7X sing 307 n n C21 H20 S7X sing 308 n n C22 H21 S7X sing 309 n n # _atom_sites.entry_id 8DG6 _atom_sites.fract_transf_matrix[1][1] 0.013422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006931 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022244 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017747 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 S7X A 1 301 301 S7X BCZ . C 3 HOH A 1 401 48 HOH HOH . C 3 HOH A 2 402 68 HOH HOH . C 3 HOH A 3 403 83 HOH HOH . C 3 HOH A 4 404 51 HOH HOH . C 3 HOH A 5 405 18 HOH HOH . C 3 HOH A 6 406 56 HOH HOH . C 3 HOH A 7 407 27 HOH HOH . C 3 HOH A 8 408 40 HOH HOH . C 3 HOH A 9 409 49 HOH HOH . C 3 HOH A 10 410 20 HOH HOH . C 3 HOH A 11 411 14 HOH HOH . C 3 HOH A 12 412 43 HOH HOH . C 3 HOH A 13 413 85 HOH HOH . C 3 HOH A 14 414 70 HOH HOH . C 3 HOH A 15 415 1 HOH HOH . C 3 HOH A 16 416 57 HOH HOH . C 3 HOH A 17 417 71 HOH HOH . C 3 HOH A 18 418 26 HOH HOH . C 3 HOH A 19 419 35 HOH HOH . C 3 HOH A 20 420 33 HOH HOH . C 3 HOH A 21 421 3 HOH HOH . C 3 HOH A 22 422 13 HOH HOH . C 3 HOH A 23 423 72 HOH HOH . C 3 HOH A 24 424 87 HOH HOH . C 3 HOH A 25 425 55 HOH HOH . C 3 HOH A 26 426 44 HOH HOH . C 3 HOH A 27 427 53 HOH HOH . C 3 HOH A 28 428 58 HOH HOH . C 3 HOH A 29 429 41 HOH HOH . C 3 HOH A 30 430 59 HOH HOH . C 3 HOH A 31 431 38 HOH HOH . C 3 HOH A 32 432 37 HOH HOH . C 3 HOH A 33 433 29 HOH HOH . C 3 HOH A 34 434 21 HOH HOH . C 3 HOH A 35 435 10 HOH HOH . C 3 HOH A 36 436 47 HOH HOH . C 3 HOH A 37 437 36 HOH HOH . C 3 HOH A 38 438 31 HOH HOH . C 3 HOH A 39 439 5 HOH HOH . C 3 HOH A 40 440 66 HOH HOH . C 3 HOH A 41 441 28 HOH HOH . C 3 HOH A 42 442 12 HOH HOH . C 3 HOH A 43 443 82 HOH HOH . C 3 HOH A 44 444 9 HOH HOH . C 3 HOH A 45 445 39 HOH HOH . C 3 HOH A 46 446 15 HOH HOH . C 3 HOH A 47 447 7 HOH HOH . C 3 HOH A 48 448 11 HOH HOH . C 3 HOH A 49 449 23 HOH HOH . C 3 HOH A 50 450 4 HOH HOH . C 3 HOH A 51 451 16 HOH HOH . C 3 HOH A 52 452 6 HOH HOH . C 3 HOH A 53 453 24 HOH HOH . C 3 HOH A 54 454 8 HOH HOH . C 3 HOH A 55 455 81 HOH HOH . C 3 HOH A 56 456 79 HOH HOH . C 3 HOH A 57 457 2 HOH HOH . C 3 HOH A 58 458 30 HOH HOH . C 3 HOH A 59 459 65 HOH HOH . C 3 HOH A 60 460 61 HOH HOH . C 3 HOH A 61 461 76 HOH HOH . C 3 HOH A 62 462 62 HOH HOH . C 3 HOH A 63 463 42 HOH HOH . C 3 HOH A 64 464 45 HOH HOH . C 3 HOH A 65 465 22 HOH HOH . C 3 HOH A 66 466 63 HOH HOH . C 3 HOH A 67 467 60 HOH HOH . C 3 HOH A 68 468 32 HOH HOH . C 3 HOH A 69 469 34 HOH HOH . C 3 HOH A 70 470 17 HOH HOH . C 3 HOH A 71 471 19 HOH HOH . C 3 HOH A 72 472 75 HOH HOH . C 3 HOH A 73 473 78 HOH HOH . C 3 HOH A 74 474 25 HOH HOH . C 3 HOH A 75 475 80 HOH HOH . C 3 HOH A 76 476 84 HOH HOH . C 3 HOH A 77 477 67 HOH HOH . C 3 HOH A 78 478 74 HOH HOH . C 3 HOH A 79 479 64 HOH HOH . C 3 HOH A 80 480 77 HOH HOH . C 3 HOH A 81 481 50 HOH HOH . C 3 HOH A 82 482 54 HOH HOH . C 3 HOH A 83 483 86 HOH HOH . C 3 HOH A 84 484 52 HOH HOH . C 3 HOH A 85 485 69 HOH HOH . C 3 HOH A 86 486 73 HOH HOH . C 3 HOH A 87 487 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 S7X . . . B 2 -19.16 -27.527 21.52 1 24.81 0 C2 S7X 301 A 1 HETATM 2 C C3 S7X . . . B 2 -18.766 -27.476 22.871 1 24.84 0 C3 S7X 301 A 1 HETATM 3 C C10 S7X . . . B 2 -16.271 -17.911 20.393 1 21.26 0 C10 S7X 301 A 1 HETATM 4 C C13 S7X . . . B 2 -17.541 -20.453 24.472 1 21.85 0 C13 S7X 301 A 1 HETATM 5 C C15 S7X . . . B 2 -19.209 -18.781 23.921 1 21.49 0 C15 S7X 301 A 1 HETATM 6 C C4 S7X . . . B 2 -17.361 -27.822 23.306 1 22.65 0 C4 S7X 301 A 1 HETATM 7 C C5 S7X . . . B 2 -15.838 -25.926 23.422 1 22.96 0 C5 S7X 301 A 1 HETATM 8 C C6 S7X . . . B 2 -14.564 -25.299 22.85 1 21.23 0 C6 S7X 301 A 1 HETATM 9 C C1 S7X . . . B 2 -20.478 -27.281 21.162 1 23.28 0 C1 S7X 301 A 1 HETATM 10 CL CL1 S7X . . . B 2 -20.912 -27.293 19.484 1 24.65 0 CL1 S7X 301 A 1 HETATM 11 F F1 S7X . . . B 2 -18.257 -27.837 20.547 1 24.57 0 F1 S7X 301 A 1 HETATM 12 N N1 S7X . . . B 2 -16.33 -26.96 22.739 1 21.22 0 N1 S7X 301 A 1 HETATM 13 O O1 S7X . . . B 2 -16.353 -25.485 24.457 1 21.3 0 O1 S7X 301 A 1 HETATM 14 N N2 S7X . . . B 2 -14.4 -23.925 23.308 1 22.06 0 N2 S7X 301 A 1 HETATM 15 C C7 S7X . . . B 2 -15.231 -22.929 22.944 1 22.26 0 C7 S7X 301 A 1 HETATM 16 O O2 S7X . . . B 2 -16.284 -23.156 22.315 1 22.46 0 O2 S7X 301 A 1 HETATM 17 C C8 S7X . . . B 2 -14.779 -21.517 23.282 1 20.55 0 C8 S7X 301 A 1 HETATM 18 N N3 S7X . . . B 2 -15.652 -20.474 22.784 1 22.43 0 N3 S7X 301 A 1 HETATM 19 N N4 S7X . . . B 2 -15.306 -19.735 21.693 1 22.36 0 N4 S7X 301 A 1 HETATM 20 C C9 S7X . . . B 2 -16.291 -18.858 21.504 1 20.98 0 C9 S7X 301 A 1 HETATM 21 O O3 S7X . . . B 2 -17.298 -17.299 20.119 1 17.84 0 O3 S7X 301 A 1 HETATM 22 N N5 S7X . . . B 2 -15.093 -17.749 19.78 1 18.22 0 N5 S7X 301 A 1 HETATM 23 C C11 S7X . . . B 2 -17.289 -18.988 22.508 1 21.98 0 C11 S7X 301 A 1 HETATM 24 C C12 S7X . . . B 2 -16.826 -20.025 23.334 1 21.45 0 C12 S7X 301 A 1 HETATM 25 C C14 S7X . . . B 2 -18.748 -19.823 24.726 1 21.99 0 C14 S7X 301 A 1 HETATM 26 C C16 S7X . . . B 2 -18.493 -18.34 22.825 1 21.24 0 C16 S7X 301 A 1 HETATM 27 C C17 S7X . . . B 2 -13.181 -23.775 24.126 1 23.64 0 C17 S7X 301 A 1 HETATM 28 C C18 S7X . . . B 2 -12.316 -24.885 23.551 1 22.9 0 C18 S7X 301 A 1 HETATM 29 C C19 S7X . . . B 2 -13.288 -25.993 23.356 1 21.64 0 C19 S7X 301 A 1 HETATM 30 C C20 S7X . . . B 2 -19.742 -27.191 23.839 1 26.49 0 C20 S7X 301 A 1 HETATM 31 C C21 S7X . . . B 2 -21.051 -26.913 23.462 1 23.98 0 C21 S7X 301 A 1 HETATM 32 C C22 S7X . . . B 2 -21.413 -26.952 22.127 1 24.68 0 C22 S7X 301 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #