data_8DGD # _model_server_result.job_id I3gdRnxTE5L4Syg9VQ3vxA _model_server_result.datetime_utc '2024-10-10 10:23:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dgd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 8DGD # _exptl.entry_id 8DGD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DGD _cell.length_a 70.68 _cell.length_b 114.38 _cell.length_c 73.89 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DGD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 70.68 0 36.945 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 74 A CYS 66 1_555 A SG CYS 108 A CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf2 B SG CYS 74 B CYS 66 1_555 B SG CYS 108 B CYS 100 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 74 B CYS 66 1_555 B SG CYS 108 B CYS 100 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.027 ? metalc ? metalc1 A NE2 HIS 6 A HIS -2 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc2 A NE2 HIS 6 A HIS -2 1_555 D ZN ZN . A ZN 202 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc3 A OD1 ASP 21 A ASP 13 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc4 A OD2 ASP 21 A ASP 13 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc5 A OD1 ASP 21 A ASP 13 1_555 D ZN ZN . A ZN 202 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc6 A OD2 ASP 21 A ASP 13 1_555 D ZN ZN . A ZN 202 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc7 A NE2 HIS 100 A HIS 92 1_555 E ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8DGD _atom_sites.fract_transf_matrix[1][1] 0.014148 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008743 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013534 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MES A 1 201 193 MES MES . D 3 ZN A 1 202 1 ZN ZN . E 3 ZN A 1 203 2 ZN ZN . F 2 MES B 1 201 193 MES MES . G 4 HOH A 1 301 237 HOH HOH . G 4 HOH A 2 302 212 HOH HOH . G 4 HOH A 3 303 163 HOH HOH . G 4 HOH A 4 304 155 HOH HOH . G 4 HOH A 5 305 254 HOH HOH . G 4 HOH A 6 306 158 HOH HOH . G 4 HOH A 7 307 92 HOH HOH . G 4 HOH A 8 308 75 HOH HOH . G 4 HOH A 9 309 247 HOH HOH . G 4 HOH A 10 310 162 HOH HOH . G 4 HOH A 11 311 181 HOH HOH . G 4 HOH A 12 312 146 HOH HOH . G 4 HOH A 13 313 79 HOH HOH . G 4 HOH A 14 314 143 HOH HOH . G 4 HOH A 15 315 248 HOH HOH . G 4 HOH A 16 316 74 HOH HOH . G 4 HOH A 17 317 193 HOH HOH . G 4 HOH A 18 318 22 HOH HOH . G 4 HOH A 19 319 234 HOH HOH . G 4 HOH A 20 320 118 HOH HOH . G 4 HOH A 21 321 151 HOH HOH . G 4 HOH A 22 322 179 HOH HOH . G 4 HOH A 23 323 172 HOH HOH . G 4 HOH A 24 324 216 HOH HOH . G 4 HOH A 25 325 12 HOH HOH . G 4 HOH A 26 326 142 HOH HOH . G 4 HOH A 27 327 94 HOH HOH . G 4 HOH A 28 328 124 HOH HOH . G 4 HOH A 29 329 127 HOH HOH . G 4 HOH A 30 330 99 HOH HOH . G 4 HOH A 31 331 152 HOH HOH . G 4 HOH A 32 332 8 HOH HOH . G 4 HOH A 33 333 222 HOH HOH . G 4 HOH A 34 334 60 HOH HOH . G 4 HOH A 35 335 154 HOH HOH . G 4 HOH A 36 336 57 HOH HOH . G 4 HOH A 37 337 17 HOH HOH . G 4 HOH A 38 338 66 HOH HOH . G 4 HOH A 39 339 119 HOH HOH . G 4 HOH A 40 340 235 HOH HOH . G 4 HOH A 41 341 137 HOH HOH . G 4 HOH A 42 342 19 HOH HOH . G 4 HOH A 43 343 1 HOH HOH . G 4 HOH A 44 344 175 HOH HOH . G 4 HOH A 45 345 225 HOH HOH . G 4 HOH A 46 346 105 HOH HOH . G 4 HOH A 47 347 52 HOH HOH . G 4 HOH A 48 348 56 HOH HOH . G 4 HOH A 49 349 156 HOH HOH . G 4 HOH A 50 350 6 HOH HOH . G 4 HOH A 51 351 188 HOH HOH . G 4 HOH A 52 352 64 HOH HOH . G 4 HOH A 53 353 238 HOH HOH . G 4 HOH A 54 354 199 HOH HOH . G 4 HOH A 55 355 96 HOH HOH . G 4 HOH A 56 356 98 HOH HOH . G 4 HOH A 57 357 53 HOH HOH . G 4 HOH A 58 358 30 HOH HOH . G 4 HOH A 59 359 255 HOH HOH . G 4 HOH A 60 360 55 HOH HOH . G 4 HOH A 61 361 18 HOH HOH . G 4 HOH A 62 362 83 HOH HOH . G 4 HOH A 63 363 9 HOH HOH . G 4 HOH A 64 364 252 HOH HOH . G 4 HOH A 65 365 153 HOH HOH . G 4 HOH A 66 366 46 HOH HOH . G 4 HOH A 67 367 68 HOH HOH . G 4 HOH A 68 368 5 HOH HOH . G 4 HOH A 69 369 48 HOH HOH . G 4 HOH A 70 370 106 HOH HOH . G 4 HOH A 71 371 132 HOH HOH . G 4 HOH A 72 372 41 HOH HOH . G 4 HOH A 73 373 84 HOH HOH . G 4 HOH A 74 374 21 HOH HOH . G 4 HOH A 75 375 50 HOH HOH . G 4 HOH A 76 376 101 HOH HOH . G 4 HOH A 77 377 2 HOH HOH . G 4 HOH A 78 378 117 HOH HOH . G 4 HOH A 79 379 35 HOH HOH . G 4 HOH A 80 380 139 HOH HOH . G 4 HOH A 81 381 253 HOH HOH . G 4 HOH A 82 382 65 HOH HOH . G 4 HOH A 83 383 11 HOH HOH . G 4 HOH A 84 384 40 HOH HOH . G 4 HOH A 85 385 112 HOH HOH . G 4 HOH A 86 386 184 HOH HOH . G 4 HOH A 87 387 115 HOH HOH . G 4 HOH A 88 388 210 HOH HOH . G 4 HOH A 89 389 61 HOH HOH . G 4 HOH A 90 390 15 HOH HOH . G 4 HOH A 91 391 211 HOH HOH . G 4 HOH A 92 392 141 HOH HOH . G 4 HOH A 93 393 197 HOH HOH . G 4 HOH A 94 394 171 HOH HOH . G 4 HOH A 95 395 89 HOH HOH . G 4 HOH A 96 396 25 HOH HOH . G 4 HOH A 97 397 32 HOH HOH . G 4 HOH A 98 398 204 HOH HOH . G 4 HOH A 99 399 180 HOH HOH . G 4 HOH A 100 400 168 HOH HOH . G 4 HOH A 101 401 174 HOH HOH . G 4 HOH A 102 402 157 HOH HOH . G 4 HOH A 103 403 200 HOH HOH . G 4 HOH A 104 404 177 HOH HOH . G 4 HOH A 105 405 217 HOH HOH . G 4 HOH A 106 406 233 HOH HOH . G 4 HOH A 107 407 227 HOH HOH . G 4 HOH A 108 408 183 HOH HOH . G 4 HOH A 109 409 250 HOH HOH . G 4 HOH A 110 410 219 HOH HOH . G 4 HOH A 111 411 249 HOH HOH . G 4 HOH A 112 412 120 HOH HOH . G 4 HOH A 113 413 251 HOH HOH . G 4 HOH A 114 414 129 HOH HOH . G 4 HOH A 115 415 125 HOH HOH . G 4 HOH A 116 416 230 HOH HOH . G 4 HOH A 117 417 244 HOH HOH . G 4 HOH A 118 418 198 HOH HOH . G 4 HOH A 119 419 256 HOH HOH . G 4 HOH A 120 420 128 HOH HOH . G 4 HOH A 121 421 133 HOH HOH . G 4 HOH A 122 422 97 HOH HOH . G 4 HOH A 123 423 150 HOH HOH . G 4 HOH A 124 424 257 HOH HOH . G 4 HOH A 125 425 206 HOH HOH . G 4 HOH A 126 426 240 HOH HOH . G 4 HOH A 127 427 245 HOH HOH . G 4 HOH A 128 428 54 HOH HOH . G 4 HOH A 129 429 121 HOH HOH . G 4 HOH A 130 430 14 HOH HOH . G 4 HOH A 131 431 36 HOH HOH . G 4 HOH A 132 432 58 HOH HOH . G 4 HOH A 133 433 114 HOH HOH . G 4 HOH A 134 434 226 HOH HOH . G 4 HOH A 135 435 113 HOH HOH . G 4 HOH A 136 436 224 HOH HOH . G 4 HOH A 137 437 103 HOH HOH . G 4 HOH A 138 438 231 HOH HOH . G 4 HOH A 139 439 43 HOH HOH . G 4 HOH A 140 440 203 HOH HOH . G 4 HOH A 141 441 85 HOH HOH . H 4 HOH B 1 301 135 HOH HOH . H 4 HOH B 2 302 45 HOH HOH . H 4 HOH B 3 303 104 HOH HOH . H 4 HOH B 4 304 123 HOH HOH . H 4 HOH B 5 305 81 HOH HOH . H 4 HOH B 6 306 136 HOH HOH . H 4 HOH B 7 307 100 HOH HOH . H 4 HOH B 8 308 70 HOH HOH . H 4 HOH B 9 309 86 HOH HOH . H 4 HOH B 10 310 29 HOH HOH . H 4 HOH B 11 311 95 HOH HOH . H 4 HOH B 12 312 108 HOH HOH . H 4 HOH B 13 313 242 HOH HOH . H 4 HOH B 14 314 91 HOH HOH . H 4 HOH B 15 315 130 HOH HOH . H 4 HOH B 16 316 144 HOH HOH . H 4 HOH B 17 317 213 HOH HOH . H 4 HOH B 18 318 80 HOH HOH . H 4 HOH B 19 319 73 HOH HOH . H 4 HOH B 20 320 93 HOH HOH . H 4 HOH B 21 321 166 HOH HOH . H 4 HOH B 22 322 20 HOH HOH . H 4 HOH B 23 323 38 HOH HOH . H 4 HOH B 24 324 77 HOH HOH . H 4 HOH B 25 325 214 HOH HOH . H 4 HOH B 26 326 33 HOH HOH . H 4 HOH B 27 327 178 HOH HOH . H 4 HOH B 28 328 88 HOH HOH . H 4 HOH B 29 329 10 HOH HOH . H 4 HOH B 30 330 192 HOH HOH . H 4 HOH B 31 331 42 HOH HOH . H 4 HOH B 32 332 87 HOH HOH . H 4 HOH B 33 333 229 HOH HOH . H 4 HOH B 34 334 102 HOH HOH . H 4 HOH B 35 335 201 HOH HOH . H 4 HOH B 36 336 134 HOH HOH . H 4 HOH B 37 337 34 HOH HOH . H 4 HOH B 38 338 24 HOH HOH . H 4 HOH B 39 339 187 HOH HOH . H 4 HOH B 40 340 189 HOH HOH . H 4 HOH B 41 341 170 HOH HOH . H 4 HOH B 42 342 23 HOH HOH . H 4 HOH B 43 343 190 HOH HOH . H 4 HOH B 44 344 71 HOH HOH . H 4 HOH B 45 345 44 HOH HOH . H 4 HOH B 46 346 7 HOH HOH . H 4 HOH B 47 347 107 HOH HOH . H 4 HOH B 48 348 13 HOH HOH . H 4 HOH B 49 349 76 HOH HOH . H 4 HOH B 50 350 62 HOH HOH . H 4 HOH B 51 351 82 HOH HOH . H 4 HOH B 52 352 145 HOH HOH . H 4 HOH B 53 353 16 HOH HOH . H 4 HOH B 54 354 147 HOH HOH . H 4 HOH B 55 355 90 HOH HOH . H 4 HOH B 56 356 109 HOH HOH . H 4 HOH B 57 357 72 HOH HOH . H 4 HOH B 58 358 232 HOH HOH . H 4 HOH B 59 359 4 HOH HOH . H 4 HOH B 60 360 3 HOH HOH . H 4 HOH B 61 361 47 HOH HOH . H 4 HOH B 62 362 39 HOH HOH . H 4 HOH B 63 363 220 HOH HOH . H 4 HOH B 64 364 149 HOH HOH . H 4 HOH B 65 365 31 HOH HOH . H 4 HOH B 66 366 148 HOH HOH . H 4 HOH B 67 367 194 HOH HOH . H 4 HOH B 68 368 191 HOH HOH . H 4 HOH B 69 369 69 HOH HOH . H 4 HOH B 70 370 165 HOH HOH . H 4 HOH B 71 371 160 HOH HOH . H 4 HOH B 72 372 59 HOH HOH . H 4 HOH B 73 373 205 HOH HOH . H 4 HOH B 74 374 202 HOH HOH . H 4 HOH B 75 375 195 HOH HOH . H 4 HOH B 76 376 167 HOH HOH . H 4 HOH B 77 377 173 HOH HOH . H 4 HOH B 78 378 186 HOH HOH . H 4 HOH B 79 379 116 HOH HOH . H 4 HOH B 80 380 78 HOH HOH . H 4 HOH B 81 381 182 HOH HOH . H 4 HOH B 82 382 110 HOH HOH . H 4 HOH B 83 383 37 HOH HOH . H 4 HOH B 84 384 161 HOH HOH . H 4 HOH B 85 385 159 HOH HOH . H 4 HOH B 86 386 28 HOH HOH . H 4 HOH B 87 387 138 HOH HOH . H 4 HOH B 88 388 236 HOH HOH . H 4 HOH B 89 389 164 HOH HOH . H 4 HOH B 90 390 228 HOH HOH . H 4 HOH B 91 391 241 HOH HOH . H 4 HOH B 92 392 239 HOH HOH . H 4 HOH B 93 393 131 HOH HOH . H 4 HOH B 94 394 169 HOH HOH . H 4 HOH B 95 395 126 HOH HOH . H 4 HOH B 96 396 51 HOH HOH . H 4 HOH B 97 397 63 HOH HOH . H 4 HOH B 98 398 209 HOH HOH . H 4 HOH B 99 399 140 HOH HOH . H 4 HOH B 100 400 243 HOH HOH . H 4 HOH B 101 401 223 HOH HOH . H 4 HOH B 102 402 207 HOH HOH . H 4 HOH B 103 403 246 HOH HOH . H 4 HOH B 104 404 218 HOH HOH . H 4 HOH B 105 405 208 HOH HOH . H 4 HOH B 106 406 67 HOH HOH . H 4 HOH B 107 407 111 HOH HOH . H 4 HOH B 108 408 26 HOH HOH . H 4 HOH B 109 409 196 HOH HOH . H 4 HOH B 110 410 215 HOH HOH . H 4 HOH B 111 411 122 HOH HOH . H 4 HOH B 112 412 185 HOH HOH . H 4 HOH B 113 413 27 HOH HOH . H 4 HOH B 114 414 221 HOH HOH . H 4 HOH B 115 415 49 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 0.2 _atom_site.Cartn_y 1.787 _atom_site.Cartn_z 19.943 _atom_site.occupancy 0.53 _atom_site.B_iso_or_equiv 35.7 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #