data_8DGS
#
_model_server_result.job_id            C-Qx1-HRh4D1YpdCGhxoGA 
_model_server_result.datetime_utc      '2025-02-05 04:43:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dgs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":803}' 
#
_entry.id    8DGS 
#
_exptl.entry_id    8DGS 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              456.21 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-[(2-fluoro-4-iodophenyl)amino]-N-(2-hydroxyethoxy)imidazo[1,5-a]pyridine-6-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DGS 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DGS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 391 A SER 364 1_555 A N SEP 392 A SEP 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C SEP 392 A SEP 365 1_555 A N ALA 393 A ALA 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 A C ALA 755 A ALA 728 1_555 A N SEP 756 A SEP 729 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 A C SEP 756 A SEP 729 1_555 A N GLU 757 A GLU 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
metalc ? metalc1 A ND1 HIS 262 A HIS 235 1_555 H ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? 
metalc ? metalc2 A SG CYS 275 A CYS 248 1_555 G ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc3 A SG CYS 278 A CYS 251 1_555 G ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc4 A SG CYS 288 A CYS 261 1_555 H ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc5 A SG CYS 291 A CYS 264 1_555 H ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc6 A ND1 HIS 296 A HIS 269 1_555 G ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc7 A SG CYS 299 A CYS 272 1_555 G ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc8 A SG CYS 307 A CYS 280 1_555 H ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc9 I O2G AGS . B AGS 801 1_555 J MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc10 I O3B AGS . B AGS 801 1_555 J MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
metalc ? metalc11 I O1A AGS . B AGS 801 1_555 J MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc12 I O2A AGS . B AGS 801 1_555 J MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc13 I O3A AGS . B AGS 801 1_555 J MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? 
metalc ? metalc14 J MG MG . B MG 802 1_555 K O05 LCJ . B LCJ 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc15 E OG SER 39 E SER 17 1_555 L MG MG . E MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc16 E OG1 THR 57 E THR 35 1_555 L MG MG . E MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc17 L MG MG . E MG 201 1_555 M O2G GNP . E GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc18 L MG MG . E MG 201 1_555 M O2B GNP . E GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C16 H14 F I N4 O3' 
_chem_comp.formula_weight    456.21 
_chem_comp.id                LCJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-[(2-fluoro-4-iodophenyl)amino]-N-(2-hydroxyethoxy)imidazo[1,5-a]pyridine-6-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C16 N08 LCJ sing 271 n y 
C16 C11 LCJ doub 272 n y 
N08 C15 LCJ doub 273 n y 
C11 C13 LCJ sing 274 n y 
C11 N06 LCJ sing 275 n y 
C13 C14 LCJ doub 276 n y 
C15 N06 LCJ sing 277 n y 
N06 C10 LCJ sing 278 n y 
C14 C12 LCJ sing 279 n y 
C10 C12 LCJ doub 280 n y 
C10 N07 LCJ sing 281 n n 
C12 C18 LCJ sing 282 n n 
N07 C17 LCJ sing 283 n n 
C20 C17 LCJ doub 284 n y 
C20 C22 LCJ sing 285 n y 
C18 O04 LCJ doub 286 n n 
C18 N09 LCJ sing 287 n n 
C17 C19 LCJ sing 288 n y 
C22 C23 LCJ doub 289 n y 
N09 O03 LCJ sing 290 n n 
O05 C25 LCJ sing 291 n n 
C25 C24 LCJ sing 292 n n 
C19 F02 LCJ sing 293 n n 
C19 C21 LCJ doub 294 n y 
C24 O03 LCJ sing 295 n n 
C23 C21 LCJ sing 296 n y 
C23 I01 LCJ sing 297 n n 
C13 H1 LCJ sing 298 n n 
C14 H2 LCJ sing 299 n n 
C15 H3 LCJ sing 300 n n 
C16 H4 LCJ sing 301 n n 
C20 H5 LCJ sing 302 n n 
C21 H6 LCJ sing 303 n n 
C22 H7 LCJ sing 304 n n 
C24 H8 LCJ sing 305 n n 
C24 H9 LCJ sing 306 n n 
C25 H10 LCJ sing 307 n n 
C25 H11 LCJ sing 308 n n 
N07 H12 LCJ sing 309 n n 
N09 H13 LCJ sing 310 n n 
O05 H14 LCJ sing 311 n n 
#
_atom_sites.entry_id                     8DGS 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 5 AGS A 1 801 801 AGS AGS . 
G 6 ZN A 1 802 901 ZN ZN . 
H 6 ZN A 1 803 902 ZN ZN . 
I 5 AGS B 1 801 801 AGS AGS . 
J 7 MG B 1 802 802 MG MG . 
K 8 LCJ B 1 803 803 LCJ LCJ . 
L 7 MG E 1 201 201 MG MG . 
M 9 GNP E 1 202 202 GNP GNP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 LCJ . . . K 8 114.292 135.144 157.976 1 239.31 ? C10 LCJ 803 B 1 
HETATM 2 C C11 LCJ . . . K 8 114.292 133.067 156.924 1 239.31 ? C11 LCJ 803 B 1 
HETATM 3 C C12 LCJ . . . K 8 115.632 135.304 157.707 1 239.31 ? C12 LCJ 803 B 1 
HETATM 4 C C13 LCJ . . . K 8 115.66 133.225 156.644 1 239.31 ? C13 LCJ 803 B 1 
HETATM 5 C C14 LCJ . . . K 8 116.309 134.343 157.042 1 239.31 ? C14 LCJ 803 B 1 
HETATM 6 C C15 LCJ . . . K 8 112.347 133.617 157.715 1 239.31 ? C15 LCJ 803 B 1 
HETATM 7 C C16 LCJ . . . K 8 113.405 132.054 156.645 1 239.31 ? C16 LCJ 803 B 1 
HETATM 8 C C17 LCJ . . . K 8 113.159 135.865 160.082 1 239.31 ? C17 LCJ 803 B 1 
HETATM 9 C C18 LCJ . . . K 8 116.45 136.525 158.108 1 239.31 ? C18 LCJ 803 B 1 
HETATM 10 C C19 LCJ . . . K 8 112.902 137.099 160.647 1 239.31 ? C19 LCJ 803 B 1 
HETATM 11 C C20 LCJ . . . K 8 113.137 134.724 160.862 1 239.31 ? C20 LCJ 803 B 1 
HETATM 12 C C21 LCJ . . . K 8 112.621 137.2 161.998 1 239.31 ? C21 LCJ 803 B 1 
HETATM 13 C C22 LCJ . . . K 8 112.855 134.825 162.213 1 239.31 ? C22 LCJ 803 B 1 
HETATM 14 C C23 LCJ . . . K 8 112.596 136.061 162.782 1 239.31 ? C23 LCJ 803 B 1 
HETATM 15 C C24 LCJ . . . K 8 118.324 138.818 157.117 1 239.31 ? C24 LCJ 803 B 1 
HETATM 16 C C25 LCJ . . . K 8 119.635 139.47 156.699 1 239.31 ? C25 LCJ 803 B 1 
HETATM 17 F F02 LCJ . . . K 8 112.93 138.216 159.866 1 239.31 ? F02 LCJ 803 B 1 
HETATM 18 I I01 LCJ . . . K 8 112.222 135.756 164.836 1 239.31 ? I01 LCJ 803 B 1 
HETATM 19 N N06 LCJ . . . K 8 113.636 134.014 157.576 1 239.31 ? N06 LCJ 803 B 1 
HETATM 20 N N07 LCJ . . . K 8 113.415 136.058 158.671 1 239.31 ? N07 LCJ 803 B 1 
HETATM 21 N N08 LCJ . . . K 8 112.222 132.402 157.131 1 239.31 ? N08 LCJ 803 B 1 
HETATM 22 N N09 LCJ . . . K 8 117.824 136.662 157.663 1 239.31 ? N09 LCJ 803 B 1 
HETATM 23 O O03 LCJ . . . K 8 118.578 137.787 158.024 1 239.31 ? O03 LCJ 803 B 1 
HETATM 24 O O04 LCJ . . . K 8 115.952 137.362 158.781 1 239.31 ? O04 LCJ 803 B 1 
HETATM 25 O O05 LCJ . . . K 8 120.164 140.177 157.782 1 239.31 ? O05 LCJ 803 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    87 
_model_server_stats.query_time_ms           673 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           25 
#