data_8DGZ # _model_server_result.job_id -yUjUIHOnKXaU55uZGS4KA _model_server_result.datetime_utc '2024-11-26 08:37:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dgz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 8DGZ # _exptl.entry_id 8DGZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.764 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-{[2-(4-chlorophenyl)-2-oxoethyl]sulfanyl}benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8DGZ _cell.length_a 89.045 _cell.length_b 89.045 _cell.length_c 183.623 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DGZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 188 A CYS 186 1_555 C C ASJ 5 C ASJ 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? covale ? covale2 B SG CYS 188 B CYS 186 1_555 D C ASJ 5 D ASJ 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? covale ? covale3 C C ACE 1 C ACE 1 1_555 C N ASP 2 C ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale4 C C VAL 4 C VAL 4 1_555 C N ASJ 5 C ASJ 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 D C ACE 1 D ACE 1 1_555 D N ASP 2 D ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 D C VAL 4 D VAL 4 1_555 D N ASJ 5 D ASJ 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C15 H11 Cl O3 S' _chem_comp.formula_weight 306.764 _chem_comp.id 8YJ _chem_comp.mon_nstd_flag . _chem_comp.name '2-{[2-(4-chlorophenyl)-2-oxoethyl]sulfanyl}benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CLA CAM 8YJ sing 1 n n CAM CAL 8YJ doub 2 n y CAM CAN 8YJ sing 3 n y CAL CAK 8YJ sing 4 n y CAN CAO 8YJ doub 5 n y CAK CAJ 8YJ doub 6 n y CAO CAJ 8YJ sing 7 n y CAJ CAI 8YJ sing 8 n n CAI OAS 8YJ doub 9 n n CAI CAH 8YJ sing 10 n n SAG CAF 8YJ sing 11 n n SAG CAH 8YJ sing 12 n n CAE CAD 8YJ doub 13 n y CAE CAF 8YJ sing 14 n y CAD CAC 8YJ sing 15 n y CAF CAA 8YJ doub 16 n y CAC CAB 8YJ doub 17 n y CAA CAB 8YJ sing 18 n y CAA CAP 8YJ sing 19 n n OAR CAP 8YJ doub 20 n n CAP OAQ 8YJ sing 21 n n CAB H1 8YJ sing 22 n n CAC H2 8YJ sing 23 n n CAD H3 8YJ sing 24 n n CAE H4 8YJ sing 25 n n CAH H5 8YJ sing 26 n n CAH H6 8YJ sing 27 n n CAK H7 8YJ sing 28 n n CAL H8 8YJ sing 29 n n CAN H9 8YJ sing 30 n n CAO H10 8YJ sing 31 n n OAQ H11 8YJ sing 32 n n # _atom_sites.entry_id 8DGZ _atom_sites.fract_transf_matrix[1][1] 0.01123 _atom_sites.fract_transf_matrix[1][2] 0.006484 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012968 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id 8YJ _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 402 _pdbx_nonpoly_scheme.pdb_mon_id 8YJ _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 8YJ . . . E 3 44.262 -12.968 11.786 0.7 116.9 ? CAA 8YJ 401 B 1 HETATM 2 C CAB 8YJ . . . E 3 44.552 -13.906 12.754 0.7 108.57 ? CAB 8YJ 401 B 1 HETATM 3 C CAC 8YJ . . . E 3 43.934 -15.138 12.698 0.7 108.85 ? CAC 8YJ 401 B 1 HETATM 4 C CAD 8YJ . . . E 3 43.059 -15.464 11.671 0.7 111.57 ? CAD 8YJ 401 B 1 HETATM 5 C CAE 8YJ . . . E 3 42.767 -14.524 10.693 0.7 113.51 ? CAE 8YJ 401 B 1 HETATM 6 C CAF 8YJ . . . E 3 43.377 -13.28 10.741 0.7 112.94 ? CAF 8YJ 401 B 1 HETATM 7 C CAH 8YJ . . . E 3 41.626 -11.078 10.312 0.7 109.12 ? CAH 8YJ 401 B 1 HETATM 8 C CAI 8YJ . . . E 3 40.331 -10.818 9.534 0.7 110.56 ? CAI 8YJ 401 B 1 HETATM 9 C CAJ 8YJ . . . E 3 40.522 -10.255 8.14 0.7 110.1 ? CAJ 8YJ 401 B 1 HETATM 10 C CAK 8YJ . . . E 3 40.883 -11.174 7.178 0.7 113.66 ? CAK 8YJ 401 B 1 HETATM 11 C CAL 8YJ . . . E 3 41.11 -10.76 5.894 0.7 124.4 ? CAL 8YJ 401 B 1 HETATM 12 C CAM 8YJ . . . E 3 40.969 -9.424 5.586 0.7 121.54 ? CAM 8YJ 401 B 1 HETATM 13 C CAN 8YJ . . . E 3 40.609 -8.485 6.553 0.7 116.95 ? CAN 8YJ 401 B 1 HETATM 14 C CAO 8YJ . . . E 3 40.38 -8.904 7.858 0.7 111.4 ? CAO 8YJ 401 B 1 HETATM 15 C CAP 8YJ . . . E 3 44.978 -11.631 11.942 0.7 116.96 ? CAP 8YJ 401 B 1 HETATM 16 O OAQ 8YJ . . . E 3 44.733 -10.954 12.983 0.7 102.96 -1 OAQ 8YJ 401 B 1 HETATM 17 O OAR 8YJ . . . E 3 45.816 -11.25 11.061 0.7 119.85 ? OAR 8YJ 401 B 1 HETATM 18 O OAS 8YJ . . . E 3 39.252 -11.056 9.986 0.7 104.19 ? OAS 8YJ 401 B 1 HETATM 19 S SAG 8YJ . . . E 3 42.922 -12.081 9.466 0.7 114.82 ? SAG 8YJ 401 B 1 HETATM 20 CL CLA 8YJ . . . E 3 41.275 -9.004 3.884 0.7 128.91 ? CLA 8YJ 401 B 1 # _model_server_stats.io_time_ms 94 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #