data_8DHF # _model_server_result.job_id tv1Bitvewjqx47VeJcMMCw _model_server_result.datetime_utc '2024-11-18 19:49:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dhf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8DHF # _exptl.entry_id 8DHF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8DHF _cell.length_a 90.85 _cell.length_b 90.85 _cell.length_c 123.667 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DHF _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 76 n n N1 C10 FMN doub 77 n n C2 O2 FMN doub 78 n n C2 N3 FMN sing 79 n n N3 C4 FMN sing 80 n n N3 HN3 FMN sing 81 n n C4 O4 FMN doub 82 n n C4 C4A FMN sing 83 n n C4A N5 FMN doub 84 n n C4A C10 FMN sing 85 n n N5 C5A FMN sing 86 n n C5A C6 FMN doub 87 n y C5A C9A FMN sing 88 n y C6 C7 FMN sing 89 n y C6 H6 FMN sing 90 n n C7 C7M FMN sing 91 n n C7 C8 FMN doub 92 n y C7M HM71 FMN sing 93 n n C7M HM72 FMN sing 94 n n C7M HM73 FMN sing 95 n n C8 C8M FMN sing 96 n n C8 C9 FMN sing 97 n y C8M HM81 FMN sing 98 n n C8M HM82 FMN sing 99 n n C8M HM83 FMN sing 100 n n C9 C9A FMN doub 101 n y C9 H9 FMN sing 102 n n C9A N10 FMN sing 103 n n N10 C10 FMN sing 104 n n N10 C1' FMN sing 105 n n C1' C2' FMN sing 106 n n C1' "H1'1" FMN sing 107 n n C1' "H1'2" FMN sing 108 n n C2' O2' FMN sing 109 n n C2' C3' FMN sing 110 n n C2' H2' FMN sing 111 n n O2' HO2' FMN sing 112 n n C3' O3' FMN sing 113 n n C3' C4' FMN sing 114 n n C3' H3' FMN sing 115 n n O3' HO3' FMN sing 116 n n C4' O4' FMN sing 117 n n C4' C5' FMN sing 118 n n C4' H4' FMN sing 119 n n O4' HO4' FMN sing 120 n n C5' O5' FMN sing 121 n n C5' "H5'1" FMN sing 122 n n C5' "H5'2" FMN sing 123 n n O5' P FMN sing 124 n n P O1P FMN doub 125 n n P O2P FMN sing 126 n n P O3P FMN sing 127 n n O2P HOP2 FMN sing 128 n n O3P HOP3 FMN sing 129 n n # _atom_sites.entry_id 8DHF _atom_sites.fract_transf_matrix[1][1] 0.011007 _atom_sites.fract_transf_matrix[1][2] 0.006355 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008086 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 500 FMN FMN . C 3 ORO A 1 402 501 ORO ORO . D 4 T6L A 1 403 1 T6L INX . E 5 ACT A 1 404 1 ACT ACT . F 6 GOL A 1 405 2 GOL GOL . G 6 GOL A 1 406 3 GOL GOL . H 6 GOL A 1 407 4 GOL GOL . I 7 SO4 A 1 408 5 SO4 SO4 . J 6 GOL A 1 409 6 GOL GOL . K 7 SO4 A 1 410 7 SO4 SO4 . L 7 SO4 A 1 411 8 SO4 SO4 . M 6 GOL A 1 412 9 GOL GOL . N 5 ACT A 1 413 10 ACT ACT . O 7 SO4 A 1 414 11 SO4 SO4 . P 5 ACT A 1 415 15 ACT ACT . Q 5 ACT A 1 416 16 ACT ACT . R 7 SO4 A 1 417 17 SO4 SO4 . S 6 GOL A 1 418 18 GOL GOL . T 6 GOL A 1 419 19 GOL GOL . U 6 GOL A 1 420 20 GOL GOL . V 8 HOH A 1 501 60 HOH HOH . V 8 HOH A 2 502 70 HOH HOH . V 8 HOH A 3 503 76 HOH HOH . V 8 HOH A 4 504 20 HOH HOH . V 8 HOH A 5 505 44 HOH HOH . V 8 HOH A 6 506 42 HOH HOH . V 8 HOH A 7 507 58 HOH HOH . V 8 HOH A 8 508 93 HOH HOH . V 8 HOH A 9 509 96 HOH HOH . V 8 HOH A 10 510 68 HOH HOH . V 8 HOH A 11 511 51 HOH HOH . V 8 HOH A 12 512 15 HOH HOH . V 8 HOH A 13 513 19 HOH HOH . V 8 HOH A 14 514 100 HOH HOH . V 8 HOH A 15 515 10 HOH HOH . V 8 HOH A 16 516 130 HOH HOH . V 8 HOH A 17 517 14 HOH HOH . V 8 HOH A 18 518 40 HOH HOH . V 8 HOH A 19 519 79 HOH HOH . V 8 HOH A 20 520 21 HOH HOH . V 8 HOH A 21 521 25 HOH HOH . V 8 HOH A 22 522 30 HOH HOH . V 8 HOH A 23 523 37 HOH HOH . V 8 HOH A 24 524 53 HOH HOH . V 8 HOH A 25 525 7 HOH HOH . V 8 HOH A 26 526 129 HOH HOH . V 8 HOH A 27 527 63 HOH HOH . V 8 HOH A 28 528 8 HOH HOH . V 8 HOH A 29 529 47 HOH HOH . V 8 HOH A 30 530 99 HOH HOH . V 8 HOH A 31 531 12 HOH HOH . V 8 HOH A 32 532 86 HOH HOH . V 8 HOH A 33 533 1 HOH HOH . V 8 HOH A 34 534 88 HOH HOH . V 8 HOH A 35 535 59 HOH HOH . V 8 HOH A 36 536 120 HOH HOH . V 8 HOH A 37 537 33 HOH HOH . V 8 HOH A 38 538 64 HOH HOH . V 8 HOH A 39 539 4 HOH HOH . V 8 HOH A 40 540 139 HOH HOH . V 8 HOH A 41 541 101 HOH HOH . V 8 HOH A 42 542 138 HOH HOH . V 8 HOH A 43 543 91 HOH HOH . V 8 HOH A 44 544 112 HOH HOH . V 8 HOH A 45 545 49 HOH HOH . V 8 HOH A 46 546 109 HOH HOH . V 8 HOH A 47 547 3 HOH HOH . V 8 HOH A 48 548 84 HOH HOH . V 8 HOH A 49 549 123 HOH HOH . V 8 HOH A 50 550 13 HOH HOH . V 8 HOH A 51 551 66 HOH HOH . V 8 HOH A 52 552 35 HOH HOH . V 8 HOH A 53 553 89 HOH HOH . V 8 HOH A 54 554 73 HOH HOH . V 8 HOH A 55 555 67 HOH HOH . V 8 HOH A 56 556 135 HOH HOH . V 8 HOH A 57 557 143 HOH HOH . V 8 HOH A 58 558 43 HOH HOH . V 8 HOH A 59 559 22 HOH HOH . V 8 HOH A 60 560 97 HOH HOH . V 8 HOH A 61 561 175 HOH HOH . V 8 HOH A 62 562 41 HOH HOH . V 8 HOH A 63 563 140 HOH HOH . V 8 HOH A 64 564 102 HOH HOH . V 8 HOH A 65 565 134 HOH HOH . V 8 HOH A 66 566 45 HOH HOH . V 8 HOH A 67 567 36 HOH HOH . V 8 HOH A 68 568 61 HOH HOH . V 8 HOH A 69 569 65 HOH HOH . V 8 HOH A 70 570 52 HOH HOH . V 8 HOH A 71 571 136 HOH HOH . V 8 HOH A 72 572 71 HOH HOH . V 8 HOH A 73 573 2 HOH HOH . V 8 HOH A 74 574 149 HOH HOH . V 8 HOH A 75 575 9 HOH HOH . V 8 HOH A 76 576 87 HOH HOH . V 8 HOH A 77 577 116 HOH HOH . V 8 HOH A 78 578 48 HOH HOH . V 8 HOH A 79 579 11 HOH HOH . V 8 HOH A 80 580 104 HOH HOH . V 8 HOH A 81 581 106 HOH HOH . V 8 HOH A 82 582 16 HOH HOH . V 8 HOH A 83 583 29 HOH HOH . V 8 HOH A 84 584 117 HOH HOH . V 8 HOH A 85 585 28 HOH HOH . V 8 HOH A 86 586 81 HOH HOH . V 8 HOH A 87 587 115 HOH HOH . V 8 HOH A 88 588 26 HOH HOH . V 8 HOH A 89 589 72 HOH HOH . V 8 HOH A 90 590 137 HOH HOH . V 8 HOH A 91 591 108 HOH HOH . V 8 HOH A 92 592 54 HOH HOH . V 8 HOH A 93 593 85 HOH HOH . V 8 HOH A 94 594 24 HOH HOH . V 8 HOH A 95 595 27 HOH HOH . V 8 HOH A 96 596 6 HOH HOH . V 8 HOH A 97 597 164 HOH HOH . V 8 HOH A 98 598 131 HOH HOH . V 8 HOH A 99 599 5 HOH HOH . V 8 HOH A 100 600 113 HOH HOH . V 8 HOH A 101 601 31 HOH HOH . V 8 HOH A 102 602 18 HOH HOH . V 8 HOH A 103 603 55 HOH HOH . V 8 HOH A 104 604 105 HOH HOH . V 8 HOH A 105 605 32 HOH HOH . V 8 HOH A 106 606 158 HOH HOH . V 8 HOH A 107 607 38 HOH HOH . V 8 HOH A 108 608 46 HOH HOH . V 8 HOH A 109 609 74 HOH HOH . V 8 HOH A 110 610 98 HOH HOH . V 8 HOH A 111 611 103 HOH HOH . V 8 HOH A 112 612 77 HOH HOH . V 8 HOH A 113 613 124 HOH HOH . V 8 HOH A 114 614 156 HOH HOH . V 8 HOH A 115 615 145 HOH HOH . V 8 HOH A 116 616 90 HOH HOH . V 8 HOH A 117 617 17 HOH HOH . V 8 HOH A 118 618 62 HOH HOH . V 8 HOH A 119 619 39 HOH HOH . V 8 HOH A 120 620 50 HOH HOH . V 8 HOH A 121 621 121 HOH HOH . V 8 HOH A 122 622 69 HOH HOH . V 8 HOH A 123 623 118 HOH HOH . V 8 HOH A 124 624 127 HOH HOH . V 8 HOH A 125 625 78 HOH HOH . V 8 HOH A 126 626 34 HOH HOH . V 8 HOH A 127 627 114 HOH HOH . V 8 HOH A 128 628 141 HOH HOH . V 8 HOH A 129 629 23 HOH HOH . V 8 HOH A 130 630 110 HOH HOH . V 8 HOH A 131 631 111 HOH HOH . V 8 HOH A 132 632 57 HOH HOH . V 8 HOH A 133 633 128 HOH HOH . V 8 HOH A 134 634 169 HOH HOH . V 8 HOH A 135 635 107 HOH HOH . V 8 HOH A 136 636 170 HOH HOH . V 8 HOH A 137 637 122 HOH HOH . V 8 HOH A 138 638 165 HOH HOH . V 8 HOH A 139 639 132 HOH HOH . V 8 HOH A 140 640 173 HOH HOH . V 8 HOH A 141 641 162 HOH HOH . V 8 HOH A 142 642 155 HOH HOH . V 8 HOH A 143 643 119 HOH HOH . V 8 HOH A 144 644 95 HOH HOH . V 8 HOH A 145 645 161 HOH HOH . V 8 HOH A 146 646 56 HOH HOH . V 8 HOH A 147 647 80 HOH HOH . V 8 HOH A 148 648 154 HOH HOH . V 8 HOH A 149 649 153 HOH HOH . V 8 HOH A 150 650 92 HOH HOH . V 8 HOH A 151 651 125 HOH HOH . V 8 HOH A 152 652 82 HOH HOH . V 8 HOH A 153 653 160 HOH HOH . V 8 HOH A 154 654 171 HOH HOH . V 8 HOH A 155 655 176 HOH HOH . V 8 HOH A 156 656 157 HOH HOH . V 8 HOH A 157 657 166 HOH HOH . V 8 HOH A 158 658 148 HOH HOH . V 8 HOH A 159 659 167 HOH HOH . V 8 HOH A 160 660 142 HOH HOH . V 8 HOH A 161 661 172 HOH HOH . V 8 HOH A 162 662 152 HOH HOH . V 8 HOH A 163 663 151 HOH HOH . V 8 HOH A 164 664 159 HOH HOH . V 8 HOH A 165 665 150 HOH HOH . V 8 HOH A 166 666 168 HOH HOH . V 8 HOH A 167 667 75 HOH HOH . V 8 HOH A 168 668 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 38.467 -18.282 11.938 1 17.84 ? N1 FMN 401 A 1 HETATM 2 C C2 FMN . . . B 2 38.871 -19 10.858 1 18.98 ? C2 FMN 401 A 1 HETATM 3 O O2 FMN . . . B 2 39.09 -18.343 9.82 1 19.68 ? O2 FMN 401 A 1 HETATM 4 N N3 FMN . . . B 2 39.054 -20.334 10.907 1 19.66 ? N3 FMN 401 A 1 HETATM 5 C C4 FMN . . . B 2 38.826 -21.067 12.017 1 18.82 ? C4 FMN 401 A 1 HETATM 6 O O4 FMN . . . B 2 38.972 -22.298 12.014 1 17.66 ? O4 FMN 401 A 1 HETATM 7 C C4A FMN . . . B 2 38.391 -20.377 13.261 1 17.5 ? C4A FMN 401 A 1 HETATM 8 N N5 FMN . . . B 2 38.175 -21.036 14.44 1 20.73 ? N5 FMN 401 A 1 HETATM 9 C C5A FMN . . . B 2 37.74 -20.349 15.544 1 18.96 ? C5A FMN 401 A 1 HETATM 10 C C6 FMN . . . B 2 37.467 -21.021 16.74 1 17.75 ? C6 FMN 401 A 1 HETATM 11 C C7 FMN . . . B 2 37.022 -20.341 17.88 1 18.55 ? C7 FMN 401 A 1 HETATM 12 C C7M FMN . . . B 2 36.734 -21.125 19.132 1 18.17 ? C7M FMN 401 A 1 HETATM 13 C C8 FMN . . . B 2 36.808 -18.878 17.832 1 20.37 ? C8 FMN 401 A 1 HETATM 14 C C8M FMN . . . B 2 36.325 -18.047 19.001 1 18.81 ? C8M FMN 401 A 1 HETATM 15 C C9 FMN . . . B 2 37.054 -18.218 16.635 1 18.68 ? C9 FMN 401 A 1 HETATM 16 C C9A FMN . . . B 2 37.51 -18.873 15.476 1 18.35 ? C9A FMN 401 A 1 HETATM 17 N N10 FMN . . . B 2 37.785 -18.172 14.26 1 17.34 ? N10 FMN 401 A 1 HETATM 18 C C10 FMN . . . B 2 38.213 -18.91 13.135 1 16.66 ? C10 FMN 401 A 1 HETATM 19 C C1' FMN . . . B 2 37.629 -16.729 14.134 1 15.8 ? C1' FMN 401 A 1 HETATM 20 C C2' FMN . . . B 2 36.197 -16.294 13.904 1 17.24 ? C2' FMN 401 A 1 HETATM 21 O O2' FMN . . . B 2 35.779 -16.762 12.606 1 17.54 ? O2' FMN 401 A 1 HETATM 22 C C3' FMN . . . B 2 36.066 -14.773 13.949 1 17.89 ? C3' FMN 401 A 1 HETATM 23 O O3' FMN . . . B 2 36.882 -14.187 12.909 1 17.51 ? O3' FMN 401 A 1 HETATM 24 C C4' FMN . . . B 2 36.483 -14.143 15.294 1 17.88 ? C4' FMN 401 A 1 HETATM 25 O O4' FMN . . . B 2 36.205 -15.011 16.407 1 17.4 ? O4' FMN 401 A 1 HETATM 26 C C5' FMN . . . B 2 35.838 -12.791 15.518 1 15.74 ? C5' FMN 401 A 1 HETATM 27 O O5' FMN . . . B 2 34.423 -12.864 15.63 1 17.11 ? O5' FMN 401 A 1 HETATM 28 P P FMN . . . B 2 33.656 -12.944 17.078 1 17.22 ? P FMN 401 A 1 HETATM 29 O O1P FMN . . . B 2 33.861 -14.348 17.588 1 17.97 ? O1P FMN 401 A 1 HETATM 30 O O2P FMN . . . B 2 34.267 -11.845 17.905 1 16.57 ? O2P FMN 401 A 1 HETATM 31 O O3P FMN . . . B 2 32.241 -12.654 16.681 1 16.44 ? O3P FMN 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #