data_8DHF # _model_server_result.job_id cVcFCv3oItETsFPt25yRCQ _model_server_result.datetime_utc '2024-11-18 19:31:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dhf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":420}' # _entry.id 8DHF # _exptl.entry_id 8DHF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8DHF _cell.length_a 90.85 _cell.length_b 90.85 _cell.length_c 123.667 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DHF _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 J N N ? 6 M N N ? 6 S N N ? 6 T N N ? 6 U N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 176 n n C1 C2 GOL sing 177 n n C1 H11 GOL sing 178 n n C1 H12 GOL sing 179 n n O1 HO1 GOL sing 180 n n C2 O2 GOL sing 181 n n C2 C3 GOL sing 182 n n C2 H2 GOL sing 183 n n O2 HO2 GOL sing 184 n n C3 O3 GOL sing 185 n n C3 H31 GOL sing 186 n n C3 H32 GOL sing 187 n n O3 HO3 GOL sing 188 n n # _atom_sites.entry_id 8DHF _atom_sites.fract_transf_matrix[1][1] 0.011007 _atom_sites.fract_transf_matrix[1][2] 0.006355 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008086 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 500 FMN FMN . C 3 ORO A 1 402 501 ORO ORO . D 4 T6L A 1 403 1 T6L INX . E 5 ACT A 1 404 1 ACT ACT . F 6 GOL A 1 405 2 GOL GOL . G 6 GOL A 1 406 3 GOL GOL . H 6 GOL A 1 407 4 GOL GOL . I 7 SO4 A 1 408 5 SO4 SO4 . J 6 GOL A 1 409 6 GOL GOL . K 7 SO4 A 1 410 7 SO4 SO4 . L 7 SO4 A 1 411 8 SO4 SO4 . M 6 GOL A 1 412 9 GOL GOL . N 5 ACT A 1 413 10 ACT ACT . O 7 SO4 A 1 414 11 SO4 SO4 . P 5 ACT A 1 415 15 ACT ACT . Q 5 ACT A 1 416 16 ACT ACT . R 7 SO4 A 1 417 17 SO4 SO4 . S 6 GOL A 1 418 18 GOL GOL . T 6 GOL A 1 419 19 GOL GOL . U 6 GOL A 1 420 20 GOL GOL . V 8 HOH A 1 501 60 HOH HOH . V 8 HOH A 2 502 70 HOH HOH . V 8 HOH A 3 503 76 HOH HOH . V 8 HOH A 4 504 20 HOH HOH . V 8 HOH A 5 505 44 HOH HOH . V 8 HOH A 6 506 42 HOH HOH . V 8 HOH A 7 507 58 HOH HOH . V 8 HOH A 8 508 93 HOH HOH . V 8 HOH A 9 509 96 HOH HOH . V 8 HOH A 10 510 68 HOH HOH . V 8 HOH A 11 511 51 HOH HOH . V 8 HOH A 12 512 15 HOH HOH . V 8 HOH A 13 513 19 HOH HOH . V 8 HOH A 14 514 100 HOH HOH . V 8 HOH A 15 515 10 HOH HOH . V 8 HOH A 16 516 130 HOH HOH . V 8 HOH A 17 517 14 HOH HOH . V 8 HOH A 18 518 40 HOH HOH . V 8 HOH A 19 519 79 HOH HOH . V 8 HOH A 20 520 21 HOH HOH . V 8 HOH A 21 521 25 HOH HOH . V 8 HOH A 22 522 30 HOH HOH . V 8 HOH A 23 523 37 HOH HOH . V 8 HOH A 24 524 53 HOH HOH . V 8 HOH A 25 525 7 HOH HOH . V 8 HOH A 26 526 129 HOH HOH . V 8 HOH A 27 527 63 HOH HOH . V 8 HOH A 28 528 8 HOH HOH . V 8 HOH A 29 529 47 HOH HOH . V 8 HOH A 30 530 99 HOH HOH . V 8 HOH A 31 531 12 HOH HOH . V 8 HOH A 32 532 86 HOH HOH . V 8 HOH A 33 533 1 HOH HOH . V 8 HOH A 34 534 88 HOH HOH . V 8 HOH A 35 535 59 HOH HOH . V 8 HOH A 36 536 120 HOH HOH . V 8 HOH A 37 537 33 HOH HOH . V 8 HOH A 38 538 64 HOH HOH . V 8 HOH A 39 539 4 HOH HOH . V 8 HOH A 40 540 139 HOH HOH . V 8 HOH A 41 541 101 HOH HOH . V 8 HOH A 42 542 138 HOH HOH . V 8 HOH A 43 543 91 HOH HOH . V 8 HOH A 44 544 112 HOH HOH . V 8 HOH A 45 545 49 HOH HOH . V 8 HOH A 46 546 109 HOH HOH . V 8 HOH A 47 547 3 HOH HOH . V 8 HOH A 48 548 84 HOH HOH . V 8 HOH A 49 549 123 HOH HOH . V 8 HOH A 50 550 13 HOH HOH . V 8 HOH A 51 551 66 HOH HOH . V 8 HOH A 52 552 35 HOH HOH . V 8 HOH A 53 553 89 HOH HOH . V 8 HOH A 54 554 73 HOH HOH . V 8 HOH A 55 555 67 HOH HOH . V 8 HOH A 56 556 135 HOH HOH . V 8 HOH A 57 557 143 HOH HOH . V 8 HOH A 58 558 43 HOH HOH . V 8 HOH A 59 559 22 HOH HOH . V 8 HOH A 60 560 97 HOH HOH . V 8 HOH A 61 561 175 HOH HOH . V 8 HOH A 62 562 41 HOH HOH . V 8 HOH A 63 563 140 HOH HOH . V 8 HOH A 64 564 102 HOH HOH . V 8 HOH A 65 565 134 HOH HOH . V 8 HOH A 66 566 45 HOH HOH . V 8 HOH A 67 567 36 HOH HOH . V 8 HOH A 68 568 61 HOH HOH . V 8 HOH A 69 569 65 HOH HOH . V 8 HOH A 70 570 52 HOH HOH . V 8 HOH A 71 571 136 HOH HOH . V 8 HOH A 72 572 71 HOH HOH . V 8 HOH A 73 573 2 HOH HOH . V 8 HOH A 74 574 149 HOH HOH . V 8 HOH A 75 575 9 HOH HOH . V 8 HOH A 76 576 87 HOH HOH . V 8 HOH A 77 577 116 HOH HOH . V 8 HOH A 78 578 48 HOH HOH . V 8 HOH A 79 579 11 HOH HOH . V 8 HOH A 80 580 104 HOH HOH . V 8 HOH A 81 581 106 HOH HOH . V 8 HOH A 82 582 16 HOH HOH . V 8 HOH A 83 583 29 HOH HOH . V 8 HOH A 84 584 117 HOH HOH . V 8 HOH A 85 585 28 HOH HOH . V 8 HOH A 86 586 81 HOH HOH . V 8 HOH A 87 587 115 HOH HOH . V 8 HOH A 88 588 26 HOH HOH . V 8 HOH A 89 589 72 HOH HOH . V 8 HOH A 90 590 137 HOH HOH . V 8 HOH A 91 591 108 HOH HOH . V 8 HOH A 92 592 54 HOH HOH . V 8 HOH A 93 593 85 HOH HOH . V 8 HOH A 94 594 24 HOH HOH . V 8 HOH A 95 595 27 HOH HOH . V 8 HOH A 96 596 6 HOH HOH . V 8 HOH A 97 597 164 HOH HOH . V 8 HOH A 98 598 131 HOH HOH . V 8 HOH A 99 599 5 HOH HOH . V 8 HOH A 100 600 113 HOH HOH . V 8 HOH A 101 601 31 HOH HOH . V 8 HOH A 102 602 18 HOH HOH . V 8 HOH A 103 603 55 HOH HOH . V 8 HOH A 104 604 105 HOH HOH . V 8 HOH A 105 605 32 HOH HOH . V 8 HOH A 106 606 158 HOH HOH . V 8 HOH A 107 607 38 HOH HOH . V 8 HOH A 108 608 46 HOH HOH . V 8 HOH A 109 609 74 HOH HOH . V 8 HOH A 110 610 98 HOH HOH . V 8 HOH A 111 611 103 HOH HOH . V 8 HOH A 112 612 77 HOH HOH . V 8 HOH A 113 613 124 HOH HOH . V 8 HOH A 114 614 156 HOH HOH . V 8 HOH A 115 615 145 HOH HOH . V 8 HOH A 116 616 90 HOH HOH . V 8 HOH A 117 617 17 HOH HOH . V 8 HOH A 118 618 62 HOH HOH . V 8 HOH A 119 619 39 HOH HOH . V 8 HOH A 120 620 50 HOH HOH . V 8 HOH A 121 621 121 HOH HOH . V 8 HOH A 122 622 69 HOH HOH . V 8 HOH A 123 623 118 HOH HOH . V 8 HOH A 124 624 127 HOH HOH . V 8 HOH A 125 625 78 HOH HOH . V 8 HOH A 126 626 34 HOH HOH . V 8 HOH A 127 627 114 HOH HOH . V 8 HOH A 128 628 141 HOH HOH . V 8 HOH A 129 629 23 HOH HOH . V 8 HOH A 130 630 110 HOH HOH . V 8 HOH A 131 631 111 HOH HOH . V 8 HOH A 132 632 57 HOH HOH . V 8 HOH A 133 633 128 HOH HOH . V 8 HOH A 134 634 169 HOH HOH . V 8 HOH A 135 635 107 HOH HOH . V 8 HOH A 136 636 170 HOH HOH . V 8 HOH A 137 637 122 HOH HOH . V 8 HOH A 138 638 165 HOH HOH . V 8 HOH A 139 639 132 HOH HOH . V 8 HOH A 140 640 173 HOH HOH . V 8 HOH A 141 641 162 HOH HOH . V 8 HOH A 142 642 155 HOH HOH . V 8 HOH A 143 643 119 HOH HOH . V 8 HOH A 144 644 95 HOH HOH . V 8 HOH A 145 645 161 HOH HOH . V 8 HOH A 146 646 56 HOH HOH . V 8 HOH A 147 647 80 HOH HOH . V 8 HOH A 148 648 154 HOH HOH . V 8 HOH A 149 649 153 HOH HOH . V 8 HOH A 150 650 92 HOH HOH . V 8 HOH A 151 651 125 HOH HOH . V 8 HOH A 152 652 82 HOH HOH . V 8 HOH A 153 653 160 HOH HOH . V 8 HOH A 154 654 171 HOH HOH . V 8 HOH A 155 655 176 HOH HOH . V 8 HOH A 156 656 157 HOH HOH . V 8 HOH A 157 657 166 HOH HOH . V 8 HOH A 158 658 148 HOH HOH . V 8 HOH A 159 659 167 HOH HOH . V 8 HOH A 160 660 142 HOH HOH . V 8 HOH A 161 661 172 HOH HOH . V 8 HOH A 162 662 152 HOH HOH . V 8 HOH A 163 663 151 HOH HOH . V 8 HOH A 164 664 159 HOH HOH . V 8 HOH A 165 665 150 HOH HOH . V 8 HOH A 166 666 168 HOH HOH . V 8 HOH A 167 667 75 HOH HOH . V 8 HOH A 168 668 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . U 6 46.367 -8.283 29.665 1 56.76 ? C1 GOL 420 A 1 HETATM 2 O O1 GOL . . . U 6 46.056 -6.983 29.139 1 65.81 ? O1 GOL 420 A 1 HETATM 3 C C2 GOL . . . U 6 47.738 -8.793 29.219 1 56.89 ? C2 GOL 420 A 1 HETATM 4 O O2 GOL . . . U 6 48.74 -8.373 30.152 1 63.65 ? O2 GOL 420 A 1 HETATM 5 C C3 GOL . . . U 6 47.724 -10.32 29.176 1 50.15 ? C3 GOL 420 A 1 HETATM 6 O O3 GOL . . . U 6 49.009 -10.924 28.922 1 43.22 ? O3 GOL 420 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #