data_8DHK # _model_server_result.job_id TxzJKmxIsKStujC42JJc1Q _model_server_result.datetime_utc '2024-11-22 23:33:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dhk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":511}' # _entry.id 8DHK # _exptl.entry_id 8DHK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DHK _cell.length_a 76.793 _cell.length_b 111.298 _cell.length_c 134.105 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DHK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N ? 3 G N N ? 3 I N N ? 3 J N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 160 A LYS 200 1_555 A N CSS 161 A CSS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C CSS 161 A CSS 201 1_555 A N ALA 162 A ALA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 B C LYS 160 B LYS 200 1_555 B N CSS 161 B CSS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C CSS 161 B CSS 201 1_555 B N ALA 162 B ALA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 364 n n C1 C2 PEG sing 365 n n C1 H11 PEG sing 366 n n C1 H12 PEG sing 367 n n O1 HO1 PEG sing 368 n n C2 O2 PEG sing 369 n n C2 H21 PEG sing 370 n n C2 H22 PEG sing 371 n n O2 C3 PEG sing 372 n n C3 C4 PEG sing 373 n n C3 H31 PEG sing 374 n n C3 H32 PEG sing 375 n n C4 O4 PEG sing 376 n n C4 H41 PEG sing 377 n n C4 H42 PEG sing 378 n n O4 HO4 PEG sing 379 n n # _atom_sites.entry_id 8DHK _atom_sites.fract_transf_matrix[1][1] 0.013022 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008985 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007457 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 501 501 FAD FAD . D 3 PEG A 1 502 503 PEG PEG . E 4 MHA A 1 503 504 MHA MHA . F 3 PEG A 1 504 506 PEG PEG . G 3 PEG A 1 505 507 PEG PEG . H 5 SO4 A 1 506 8 SO4 SO4 . I 3 PEG A 1 507 14 PEG PEG . J 3 PEG A 1 508 34 PEG PEG . K 2 FAD B 1 501 501 FAD FAD . L 3 PEG B 1 502 502 PEG PEG . M 3 PEG B 1 503 504 PEG PEG . N 3 PEG B 1 504 505 PEG PEG . O 3 PEG B 1 505 510 PEG PEG . P 3 PEG B 1 506 513 PEG PEG . Q 4 MHA B 1 507 515 MHA MHA . R 5 SO4 B 1 508 3 SO4 SO4 . S 5 SO4 B 1 509 4 SO4 SO4 . T 5 SO4 B 1 510 14 SO4 SO4 . U 3 PEG B 1 511 10 PEG PEG . V 6 HOH A 1 601 622 HOH HOH . V 6 HOH A 2 602 93 HOH HOH . V 6 HOH A 3 603 747 HOH HOH . V 6 HOH A 4 604 403 HOH HOH . V 6 HOH A 5 605 347 HOH HOH . V 6 HOH A 6 606 447 HOH HOH . V 6 HOH A 7 607 384 HOH HOH . V 6 HOH A 8 608 338 HOH HOH . V 6 HOH A 9 609 811 HOH HOH . V 6 HOH A 10 610 844 HOH HOH . V 6 HOH A 11 611 123 HOH HOH . V 6 HOH A 12 612 402 HOH HOH . V 6 HOH A 13 613 407 HOH HOH . V 6 HOH A 14 614 350 HOH HOH . V 6 HOH A 15 615 348 HOH HOH . V 6 HOH A 16 616 866 HOH HOH . V 6 HOH A 17 617 373 HOH HOH . V 6 HOH A 18 618 805 HOH HOH . V 6 HOH A 19 619 609 HOH HOH . V 6 HOH A 20 620 361 HOH HOH . V 6 HOH A 21 621 808 HOH HOH . V 6 HOH A 22 622 29 HOH HOH . V 6 HOH A 23 623 386 HOH HOH . V 6 HOH A 24 624 842 HOH HOH . V 6 HOH A 25 625 344 HOH HOH . V 6 HOH A 26 626 704 HOH HOH . V 6 HOH A 27 627 833 HOH HOH . V 6 HOH A 28 628 349 HOH HOH . V 6 HOH A 29 629 848 HOH HOH . V 6 HOH A 30 630 3 HOH HOH . V 6 HOH A 31 631 352 HOH HOH . V 6 HOH A 32 632 374 HOH HOH . V 6 HOH A 33 633 414 HOH HOH . V 6 HOH A 34 634 397 HOH HOH . V 6 HOH A 35 635 845 HOH HOH . V 6 HOH A 36 636 623 HOH HOH . V 6 HOH A 37 637 816 HOH HOH . V 6 HOH A 38 638 370 HOH HOH . V 6 HOH A 39 639 334 HOH HOH . V 6 HOH A 40 640 21 HOH HOH . V 6 HOH A 41 641 813 HOH HOH . V 6 HOH A 42 642 406 HOH HOH . V 6 HOH A 43 643 1 HOH HOH . V 6 HOH A 44 644 73 HOH HOH . V 6 HOH A 45 645 610 HOH HOH . V 6 HOH A 46 646 835 HOH HOH . V 6 HOH A 47 647 457 HOH HOH . V 6 HOH A 48 648 16 HOH HOH . V 6 HOH A 49 649 438 HOH HOH . V 6 HOH A 50 650 20 HOH HOH . V 6 HOH A 51 651 449 HOH HOH . V 6 HOH A 52 652 580 HOH HOH . V 6 HOH A 53 653 50 HOH HOH . V 6 HOH A 54 654 339 HOH HOH . V 6 HOH A 55 655 753 HOH HOH . V 6 HOH A 56 656 391 HOH HOH . V 6 HOH A 57 657 117 HOH HOH . V 6 HOH A 58 658 394 HOH HOH . V 6 HOH A 59 659 387 HOH HOH . V 6 HOH A 60 660 868 HOH HOH . V 6 HOH A 61 661 362 HOH HOH . V 6 HOH A 62 662 389 HOH HOH . V 6 HOH A 63 663 658 HOH HOH . V 6 HOH A 64 664 377 HOH HOH . V 6 HOH A 65 665 850 HOH HOH . V 6 HOH A 66 666 14 HOH HOH . V 6 HOH A 67 667 634 HOH HOH . V 6 HOH A 68 668 87 HOH HOH . V 6 HOH A 69 669 351 HOH HOH . V 6 HOH A 70 670 450 HOH HOH . V 6 HOH A 71 671 770 HOH HOH . V 6 HOH A 72 672 380 HOH HOH . V 6 HOH A 73 673 836 HOH HOH . V 6 HOH A 74 674 439 HOH HOH . V 6 HOH A 75 675 843 HOH HOH . V 6 HOH A 76 676 458 HOH HOH . V 6 HOH A 77 677 19 HOH HOH . V 6 HOH A 78 678 769 HOH HOH . V 6 HOH A 79 679 857 HOH HOH . V 6 HOH A 80 680 605 HOH HOH . V 6 HOH A 81 681 831 HOH HOH . V 6 HOH A 82 682 834 HOH HOH . V 6 HOH A 83 683 399 HOH HOH . V 6 HOH A 84 684 716 HOH HOH . V 6 HOH A 85 685 422 HOH HOH . V 6 HOH A 86 686 870 HOH HOH . V 6 HOH A 87 687 691 HOH HOH . V 6 HOH A 88 688 220 HOH HOH . V 6 HOH A 89 689 830 HOH HOH . V 6 HOH A 90 690 744 HOH HOH . V 6 HOH A 91 691 670 HOH HOH . V 6 HOH A 92 692 272 HOH HOH . V 6 HOH A 93 693 814 HOH HOH . V 6 HOH A 94 694 633 HOH HOH . V 6 HOH A 95 695 773 HOH HOH . V 6 HOH A 96 696 425 HOH HOH . V 6 HOH A 97 697 829 HOH HOH . V 6 HOH A 98 698 714 HOH HOH . V 6 HOH A 99 699 867 HOH HOH . V 6 HOH A 100 700 436 HOH HOH . V 6 HOH A 101 701 620 HOH HOH . V 6 HOH A 102 702 398 HOH HOH . V 6 HOH A 103 703 849 HOH HOH . W 6 HOH B 1 601 864 HOH HOH . W 6 HOH B 2 602 852 HOH HOH . W 6 HOH B 3 603 81 HOH HOH . W 6 HOH B 4 604 53 HOH HOH . W 6 HOH B 5 605 512 HOH HOH . W 6 HOH B 6 606 722 HOH HOH . W 6 HOH B 7 607 444 HOH HOH . W 6 HOH B 8 608 798 HOH HOH . W 6 HOH B 9 609 578 HOH HOH . W 6 HOH B 10 610 860 HOH HOH . W 6 HOH B 11 611 491 HOH HOH . W 6 HOH B 12 612 650 HOH HOH . W 6 HOH B 13 613 846 HOH HOH . W 6 HOH B 14 614 838 HOH HOH . W 6 HOH B 15 615 702 HOH HOH . W 6 HOH B 16 616 647 HOH HOH . W 6 HOH B 17 617 581 HOH HOH . W 6 HOH B 18 618 853 HOH HOH . W 6 HOH B 19 619 648 HOH HOH . W 6 HOH B 20 620 481 HOH HOH . W 6 HOH B 21 621 847 HOH HOH . W 6 HOH B 22 622 520 HOH HOH . W 6 HOH B 23 623 197 HOH HOH . W 6 HOH B 24 624 482 HOH HOH . W 6 HOH B 25 625 40 HOH HOH . W 6 HOH B 26 626 477 HOH HOH . W 6 HOH B 27 627 47 HOH HOH . W 6 HOH B 28 628 493 HOH HOH . W 6 HOH B 29 629 659 HOH HOH . W 6 HOH B 30 630 495 HOH HOH . W 6 HOH B 31 631 865 HOH HOH . W 6 HOH B 32 632 556 HOH HOH . W 6 HOH B 33 633 807 HOH HOH . W 6 HOH B 34 634 698 HOH HOH . W 6 HOH B 35 635 485 HOH HOH . W 6 HOH B 36 636 5 HOH HOH . W 6 HOH B 37 637 703 HOH HOH . W 6 HOH B 38 638 345 HOH HOH . W 6 HOH B 39 639 237 HOH HOH . W 6 HOH B 40 640 506 HOH HOH . W 6 HOH B 41 641 379 HOH HOH . W 6 HOH B 42 642 561 HOH HOH . W 6 HOH B 43 643 529 HOH HOH . W 6 HOH B 44 644 783 HOH HOH . W 6 HOH B 45 645 841 HOH HOH . W 6 HOH B 46 646 570 HOH HOH . W 6 HOH B 47 647 448 HOH HOH . W 6 HOH B 48 648 492 HOH HOH . W 6 HOH B 49 649 680 HOH HOH . W 6 HOH B 50 650 483 HOH HOH . W 6 HOH B 51 651 36 HOH HOH . W 6 HOH B 52 652 824 HOH HOH . W 6 HOH B 53 653 858 HOH HOH . W 6 HOH B 54 654 484 HOH HOH . W 6 HOH B 55 655 494 HOH HOH . W 6 HOH B 56 656 551 HOH HOH . W 6 HOH B 57 657 64 HOH HOH . W 6 HOH B 58 658 766 HOH HOH . W 6 HOH B 59 659 396 HOH HOH . W 6 HOH B 60 660 638 HOH HOH . W 6 HOH B 61 661 85 HOH HOH . W 6 HOH B 62 662 84 HOH HOH . W 6 HOH B 63 663 518 HOH HOH . W 6 HOH B 64 664 859 HOH HOH . W 6 HOH B 65 665 854 HOH HOH . W 6 HOH B 66 666 869 HOH HOH . W 6 HOH B 67 667 544 HOH HOH . W 6 HOH B 68 668 488 HOH HOH . W 6 HOH B 69 669 728 HOH HOH . W 6 HOH B 70 670 663 HOH HOH . W 6 HOH B 71 671 655 HOH HOH . W 6 HOH B 72 672 639 HOH HOH . W 6 HOH B 73 673 855 HOH HOH . W 6 HOH B 74 674 654 HOH HOH . W 6 HOH B 75 675 694 HOH HOH . W 6 HOH B 76 676 582 HOH HOH . W 6 HOH B 77 677 754 HOH HOH . W 6 HOH B 78 678 765 HOH HOH . W 6 HOH B 79 679 157 HOH HOH . W 6 HOH B 80 680 796 HOH HOH . W 6 HOH B 81 681 727 HOH HOH . W 6 HOH B 82 682 56 HOH HOH . W 6 HOH B 83 683 863 HOH HOH . W 6 HOH B 84 684 91 HOH HOH . W 6 HOH B 85 685 837 HOH HOH . W 6 HOH B 86 686 141 HOH HOH . W 6 HOH B 87 687 480 HOH HOH . W 6 HOH B 88 688 693 HOH HOH . W 6 HOH B 89 689 400 HOH HOH . W 6 HOH B 90 690 121 HOH HOH . W 6 HOH B 91 691 817 HOH HOH . W 6 HOH B 92 692 828 HOH HOH . W 6 HOH B 93 693 764 HOH HOH . W 6 HOH B 94 694 536 HOH HOH . W 6 HOH B 95 695 563 HOH HOH . W 6 HOH B 96 696 148 HOH HOH . W 6 HOH B 97 697 756 HOH HOH . W 6 HOH B 98 698 851 HOH HOH . W 6 HOH B 99 699 517 HOH HOH . W 6 HOH B 100 700 795 HOH HOH . W 6 HOH B 101 701 499 HOH HOH . W 6 HOH B 102 702 823 HOH HOH . W 6 HOH B 103 703 579 HOH HOH . W 6 HOH B 104 704 577 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . U 3 40.325 22.291 -16.125 1 80.13 ? C1 PEG 511 B 1 HETATM 2 O O1 PEG . . . U 3 39.819 23.015 -15.037 1 74 ? O1 PEG 511 B 1 HETATM 3 C C2 PEG . . . U 3 41.235 21.172 -15.62 1 78.82 ? C2 PEG 511 B 1 HETATM 4 O O2 PEG . . . U 3 41.796 20.493 -16.71 1 83.28 ? O2 PEG 511 B 1 HETATM 5 C C3 PEG . . . U 3 40.934 19.583 -17.334 1 69.23 ? C3 PEG 511 B 1 HETATM 6 C C4 PEG . . . U 3 41.042 19.718 -18.85 1 68.2 ? C4 PEG 511 B 1 HETATM 7 O O4 PEG . . . U 3 41.771 18.631 -19.349 1 75.84 ? O4 PEG 511 B 1 HETATM 8 H H11 PEG . . . U 3 39.589 21.906 -16.626 1 95.99 ? H11 PEG 511 B 1 HETATM 9 H H12 PEG . . . U 3 40.832 22.885 -16.7 1 95.99 ? H12 PEG 511 B 1 HETATM 10 H HO1 PEG . . . U 3 40.125 22.691 -14.313 1 88.63 ? HO1 PEG 511 B 1 HETATM 11 H H21 PEG . . . U 3 41.944 21.553 -15.078 1 94.42 ? H21 PEG 511 B 1 HETATM 12 H H22 PEG . . . U 3 40.717 20.551 -15.085 1 94.42 ? H22 PEG 511 B 1 HETATM 13 H H31 PEG . . . U 3 40.022 19.764 -17.059 1 82.91 ? H31 PEG 511 B 1 HETATM 14 H H32 PEG . . . U 3 41.177 18.681 -17.074 1 82.91 ? H32 PEG 511 B 1 HETATM 15 H H41 PEG . . . U 3 40.154 19.722 -19.241 1 81.68 ? H41 PEG 511 B 1 HETATM 16 H H42 PEG . . . U 3 41.497 20.545 -19.073 1 81.68 ? H42 PEG 511 B 1 HETATM 17 H HO4 PEG . . . U 3 42.49 18.547 -18.904 1 90.84 ? HO4 PEG 511 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 17 #