data_8DHN # _model_server_result.job_id eDPfTCjTr5gAfknJp9FKTA _model_server_result.datetime_utc '2024-11-25 03:57:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dhn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8DHN # _exptl.entry_id 8DHN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 272.056 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2P)-6-bromo-3-hydroxy-2-(5-methyl-1,2,4-oxadiazol-3-yl)pyridin-4(1H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8DHN _cell.length_a 75.034 _cell.length_b 75.034 _cell.length_c 121.24 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DHN _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall 'P 62 2 (x,y,z+1/3)' _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 47 A HIS 41 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc2 A OE1 GLU 74 A GLU 80 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc3 A OD2 ASP 102 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc4 A OD1 ASP 102 A ASP 108 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc5 A OE2 GLU 113 A GLU 119 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc6 A O ILE 114 A ILE 120 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc7 B O01 T6U . A T6U 201 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc8 B O15 T6U . A T6U 201 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc9 B N05 T6U . A T6U 201 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc10 B O01 T6U . A T6U 201 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc11 D MN MN . A MN 203 1_555 E O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc12 D MN MN . A MN 203 1_555 E O HOH . A HOH 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? # _chem_comp.formula 'C8 H6 Br N3 O3' _chem_comp.formula_weight 272.056 _chem_comp.id T6U _chem_comp.mon_nstd_flag . _chem_comp.name (2P)-6-bromo-3-hydroxy-2-(5-methyl-1,2,4-oxadiazol-3-yl)pyridin-4(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C08 C07 T6U sing 290 n n BR12 C11 T6U sing 291 n n C07 N09 T6U doub 292 n y C07 O06 T6U sing 293 n y N09 C04 T6U sing 294 n y N10 C11 T6U sing 295 n n N10 C03 T6U sing 296 n n C11 C13 T6U doub 297 n n O06 N05 T6U sing 298 n y C04 N05 T6U doub 299 n y C04 C03 T6U sing 300 n n C03 C02 T6U doub 301 n n C13 C14 T6U sing 302 n n C02 C14 T6U sing 303 n n C02 O01 T6U sing 304 n n C14 O15 T6U doub 305 n n C08 H083 T6U sing 306 n n C08 H082 T6U sing 307 n n C08 H081 T6U sing 308 n n C13 H131 T6U sing 309 n n N10 H101 T6U sing 310 n n O01 H1 T6U sing 311 n n # _atom_sites.entry_id 8DHN _atom_sites.fract_transf_matrix[1][1] 0.013327 _atom_sites.fract_transf_matrix[1][2] 0.007695 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008248 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T6U A 1 201 200 T6U CYC . C 3 MN A 1 202 301 MN MN . D 3 MN A 1 203 302 MN MN . E 4 HOH A 1 301 91 HOH HOH . E 4 HOH A 2 302 70 HOH HOH . E 4 HOH A 3 303 78 HOH HOH . E 4 HOH A 4 304 45 HOH HOH . E 4 HOH A 5 305 69 HOH HOH . E 4 HOH A 6 306 26 HOH HOH . E 4 HOH A 7 307 86 HOH HOH . E 4 HOH A 8 308 30 HOH HOH . E 4 HOH A 9 309 34 HOH HOH . E 4 HOH A 10 310 27 HOH HOH . E 4 HOH A 11 311 16 HOH HOH . E 4 HOH A 12 312 57 HOH HOH . E 4 HOH A 13 313 2 HOH HOH . E 4 HOH A 14 314 82 HOH HOH . E 4 HOH A 15 315 68 HOH HOH . E 4 HOH A 16 316 52 HOH HOH . E 4 HOH A 17 317 8 HOH HOH . E 4 HOH A 18 318 10 HOH HOH . E 4 HOH A 19 319 44 HOH HOH . E 4 HOH A 20 320 43 HOH HOH . E 4 HOH A 21 321 55 HOH HOH . E 4 HOH A 22 322 22 HOH HOH . E 4 HOH A 23 323 80 HOH HOH . E 4 HOH A 24 324 3 HOH HOH . E 4 HOH A 25 325 51 HOH HOH . E 4 HOH A 26 326 50 HOH HOH . E 4 HOH A 27 327 19 HOH HOH . E 4 HOH A 28 328 40 HOH HOH . E 4 HOH A 29 329 94 HOH HOH . E 4 HOH A 30 330 25 HOH HOH . E 4 HOH A 31 331 17 HOH HOH . E 4 HOH A 32 332 13 HOH HOH . E 4 HOH A 33 333 95 HOH HOH . E 4 HOH A 34 334 9 HOH HOH . E 4 HOH A 35 335 20 HOH HOH . E 4 HOH A 36 336 7 HOH HOH . E 4 HOH A 37 337 87 HOH HOH . E 4 HOH A 38 338 64 HOH HOH . E 4 HOH A 39 339 4 HOH HOH . E 4 HOH A 40 340 1 HOH HOH . E 4 HOH A 41 341 46 HOH HOH . E 4 HOH A 42 342 66 HOH HOH . E 4 HOH A 43 343 65 HOH HOH . E 4 HOH A 44 344 21 HOH HOH . E 4 HOH A 45 345 38 HOH HOH . E 4 HOH A 46 346 11 HOH HOH . E 4 HOH A 47 347 33 HOH HOH . E 4 HOH A 48 348 96 HOH HOH . E 4 HOH A 49 349 23 HOH HOH . E 4 HOH A 50 350 14 HOH HOH . E 4 HOH A 51 351 18 HOH HOH . E 4 HOH A 52 352 54 HOH HOH . E 4 HOH A 53 353 5 HOH HOH . E 4 HOH A 54 354 90 HOH HOH . E 4 HOH A 55 355 79 HOH HOH . E 4 HOH A 56 356 47 HOH HOH . E 4 HOH A 57 357 48 HOH HOH . E 4 HOH A 58 358 12 HOH HOH . E 4 HOH A 59 359 6 HOH HOH . E 4 HOH A 60 360 49 HOH HOH . E 4 HOH A 61 361 24 HOH HOH . E 4 HOH A 62 362 81 HOH HOH . E 4 HOH A 63 363 15 HOH HOH . E 4 HOH A 64 364 84 HOH HOH . E 4 HOH A 65 365 53 HOH HOH . E 4 HOH A 66 366 32 HOH HOH . E 4 HOH A 67 367 93 HOH HOH . E 4 HOH A 68 368 37 HOH HOH . E 4 HOH A 69 369 28 HOH HOH . E 4 HOH A 70 370 73 HOH HOH . E 4 HOH A 71 371 35 HOH HOH . E 4 HOH A 72 372 89 HOH HOH . E 4 HOH A 73 373 83 HOH HOH . E 4 HOH A 74 374 58 HOH HOH . E 4 HOH A 75 375 29 HOH HOH . E 4 HOH A 76 376 36 HOH HOH . E 4 HOH A 77 377 63 HOH HOH . E 4 HOH A 78 378 92 HOH HOH . E 4 HOH A 79 379 88 HOH HOH . E 4 HOH A 80 380 61 HOH HOH . E 4 HOH A 81 381 71 HOH HOH . E 4 HOH A 82 382 60 HOH HOH . E 4 HOH A 83 383 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 T6U . . . B 2 19.338 17.193 -13.684 1 41.87 ? C02 T6U 201 A 1 HETATM 2 C C03 T6U . . . B 2 18.891 17.184 -15.145 1 52.29 ? C03 T6U 201 A 1 HETATM 3 C C04 T6U . . . B 2 17.601 16.488 -15.571 1 63.29 ? C04 T6U 201 A 1 HETATM 4 C C07 T6U . . . B 2 15.702 16.093 -16.547 1 73.21 ? C07 T6U 201 A 1 HETATM 5 C C08 T6U . . . B 2 14.448 16.234 -17.408 1 57.03 ? C08 T6U 201 A 1 HETATM 6 C C11 T6U . . . B 2 20.968 18.553 -15.8 1 67.9 ? C11 T6U 201 A 1 HETATM 7 C C13 T6U . . . B 2 21.423 18.565 -14.344 1 53.07 ? C13 T6U 201 A 1 HETATM 8 C C14 T6U . . . B 2 20.602 17.885 -13.303 1 45.99 ? C14 T6U 201 A 1 HETATM 9 N N05 T6U . . . B 2 17.184 15.287 -15.192 1 72.39 ? N05 T6U 201 A 1 HETATM 10 N N09 T6U . . . B 2 16.678 16.995 -16.423 1 80.28 ? N09 T6U 201 A 1 HETATM 11 N N10 T6U . . . B 2 19.71 17.863 -16.179 1 62.36 ? N10 T6U 201 A 1 HETATM 12 O O01 T6U . . . B 2 18.573 16.556 -12.703 1 39.6 -1 O01 T6U 201 A 1 HETATM 13 O O06 T6U . . . B 2 16.019 15.056 -15.796 1 86.08 ? O06 T6U 201 A 1 HETATM 14 O O15 T6U . . . B 2 20.954 17.895 -12.172 1 50.59 ? O15 T6U 201 A 1 HETATM 15 BR BR12 T6U . . . B 2 22.027 19.435 -17.164 1 86.12 ? BR12 T6U 201 A 1 HETATM 16 H H083 T6U . . . B 2 14.561 17.084 -18.075 1 69.48 ? H083 T6U 201 A 1 HETATM 17 H H082 T6U . . . B 2 13.585 16.389 -16.767 1 69.48 ? H082 T6U 201 A 1 HETATM 18 H H081 T6U . . . B 2 14.307 15.33 -17.993 1 69.48 ? H081 T6U 201 A 1 HETATM 19 H H131 T6U . . . B 2 22.342 19.068 -14.067 1 64.73 ? H131 T6U 201 A 1 HETATM 20 H H101 T6U . . . B 2 19.413 17.856 -17.135 1 75.88 ? H101 T6U 201 A 1 # _model_server_stats.io_time_ms 122 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 366 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 20 #