data_8DI4 # _model_server_result.job_id yBtYuP5GGWHO1G-v4Jf3RA _model_server_result.datetime_utc '2024-10-19 20:15:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8di4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 8DI4 # _exptl.entry_id 8DI4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DI4 _cell.length_a 49.73 _cell.length_b 81.36 _cell.length_c 157.749 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DI4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 488 1_555 A SG CYS 58 A CYS 492 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 A NE2 HIS 85 A HIS 519 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc2 A NE2 HIS 119 A HIS 553 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc3 A OD2 ASP 120 A ASP 554 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc4 A OD1 ASP 120 A ASP 554 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc5 A OD1 ASP 230 A ASP 664 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc6 C ZN ZN . A ZN 901 1_555 I O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? metalc ? metalc7 D MG MG . A MG 902 1_555 I O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc8 D MG MG . A MG 902 1_555 I O HOH . A HOH 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc9 D MG MG . A MG 902 1_555 I O HOH . A HOH 1013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc10 D MG MG . A MG 902 1_555 I O HOH . A HOH 1027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc11 D MG MG . A MG 902 1_555 I O HOH . A HOH 1046 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc12 B NE2 HIS 85 B HIS 519 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc13 B NE2 HIS 119 B HIS 553 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc14 B OD2 ASP 120 B ASP 554 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc15 B OD1 ASP 120 B ASP 554 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc16 B OD1 ASP 230 B ASP 664 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc17 F ZN ZN . B ZN 801 1_555 J O HOH . B HOH 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc18 G MG MG . B MG 802 1_555 J O HOH . B HOH 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc19 G MG MG . B MG 802 1_555 J O HOH . B HOH 921 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc20 G MG MG . B MG 802 1_555 J O HOH . B HOH 922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc21 G MG MG . B MG 802 1_555 J O HOH . B HOH 924 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc22 G MG MG . B MG 802 1_555 J O HOH . B HOH 930 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8DI4 _atom_sites.fract_transf_matrix[1][1] 0.020109 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 901 901 ZN ZN . D 3 MG A 1 902 902 MG MG . E 4 S9I A 1 903 4000 S9I LIG . F 2 ZN B 1 801 801 ZN ZN . G 3 MG B 1 802 802 MG MG . H 4 S9I B 1 803 4000 S9I LIG . I 5 HOH A 1 1001 1019 HOH HOH . I 5 HOH A 2 1002 1005 HOH HOH . I 5 HOH A 3 1003 1016 HOH HOH . I 5 HOH A 4 1004 1017 HOH HOH . I 5 HOH A 5 1005 1010 HOH HOH . I 5 HOH A 6 1006 1026 HOH HOH . I 5 HOH A 7 1007 1014 HOH HOH . I 5 HOH A 8 1008 34 HOH HOH . I 5 HOH A 9 1009 24 HOH HOH . I 5 HOH A 10 1010 38 HOH HOH . I 5 HOH A 11 1011 1001 HOH HOH . I 5 HOH A 12 1012 1024 HOH HOH . I 5 HOH A 13 1013 1002 HOH HOH . I 5 HOH A 14 1014 1004 HOH HOH . I 5 HOH A 15 1015 1011 HOH HOH . I 5 HOH A 16 1016 7 HOH HOH . I 5 HOH A 17 1017 1009 HOH HOH . I 5 HOH A 18 1018 1025 HOH HOH . I 5 HOH A 19 1019 1023 HOH HOH . I 5 HOH A 20 1020 39 HOH HOH . I 5 HOH A 21 1021 1021 HOH HOH . I 5 HOH A 22 1022 1015 HOH HOH . I 5 HOH A 23 1023 5 HOH HOH . I 5 HOH A 24 1024 33 HOH HOH . I 5 HOH A 25 1025 22 HOH HOH . I 5 HOH A 26 1026 1006 HOH HOH . I 5 HOH A 27 1027 1030 HOH HOH . I 5 HOH A 28 1028 1012 HOH HOH . I 5 HOH A 29 1029 1034 HOH HOH . I 5 HOH A 30 1030 13 HOH HOH . I 5 HOH A 31 1031 20 HOH HOH . I 5 HOH A 32 1032 1003 HOH HOH . I 5 HOH A 33 1033 1008 HOH HOH . I 5 HOH A 34 1034 1031 HOH HOH . I 5 HOH A 35 1035 1013 HOH HOH . I 5 HOH A 36 1036 1018 HOH HOH . I 5 HOH A 37 1037 1020 HOH HOH . I 5 HOH A 38 1038 1022 HOH HOH . I 5 HOH A 39 1039 17 HOH HOH . I 5 HOH A 40 1040 12 HOH HOH . I 5 HOH A 41 1041 1033 HOH HOH . I 5 HOH A 42 1042 1007 HOH HOH . I 5 HOH A 43 1043 36 HOH HOH . I 5 HOH A 44 1044 1035 HOH HOH . I 5 HOH A 45 1045 4 HOH HOH . I 5 HOH A 46 1046 1027 HOH HOH . I 5 HOH A 47 1047 26 HOH HOH . I 5 HOH A 48 1048 1032 HOH HOH . I 5 HOH A 49 1049 1028 HOH HOH . I 5 HOH A 50 1050 1029 HOH HOH . I 5 HOH A 51 1051 23 HOH HOH . I 5 HOH A 52 1052 25 HOH HOH . I 5 HOH A 53 1053 1 HOH HOH . I 5 HOH A 54 1054 1036 HOH HOH . I 5 HOH A 55 1055 40 HOH HOH . I 5 HOH A 56 1056 1037 HOH HOH . J 5 HOH B 1 901 908 HOH HOH . J 5 HOH B 2 902 32 HOH HOH . J 5 HOH B 3 903 37 HOH HOH . J 5 HOH B 4 904 901 HOH HOH . J 5 HOH B 5 905 30 HOH HOH . J 5 HOH B 6 906 21 HOH HOH . J 5 HOH B 7 907 29 HOH HOH . J 5 HOH B 8 908 14 HOH HOH . J 5 HOH B 9 909 912 HOH HOH . J 5 HOH B 10 910 907 HOH HOH . J 5 HOH B 11 911 3 HOH HOH . J 5 HOH B 12 912 2 HOH HOH . J 5 HOH B 13 913 919 HOH HOH . J 5 HOH B 14 914 910 HOH HOH . J 5 HOH B 15 915 42 HOH HOH . J 5 HOH B 16 916 28 HOH HOH . J 5 HOH B 17 917 920 HOH HOH . J 5 HOH B 18 918 915 HOH HOH . J 5 HOH B 19 919 6 HOH HOH . J 5 HOH B 20 920 909 HOH HOH . J 5 HOH B 21 921 918 HOH HOH . J 5 HOH B 22 922 913 HOH HOH . J 5 HOH B 23 923 923 HOH HOH . J 5 HOH B 24 924 903 HOH HOH . J 5 HOH B 25 925 16 HOH HOH . J 5 HOH B 26 926 911 HOH HOH . J 5 HOH B 27 927 914 HOH HOH . J 5 HOH B 28 928 35 HOH HOH . J 5 HOH B 29 929 31 HOH HOH . J 5 HOH B 30 930 905 HOH HOH . J 5 HOH B 31 931 41 HOH HOH . J 5 HOH B 32 932 43 HOH HOH . J 5 HOH B 33 933 902 HOH HOH . J 5 HOH B 34 934 8 HOH HOH . J 5 HOH B 35 935 924 HOH HOH . J 5 HOH B 36 936 10 HOH HOH . J 5 HOH B 37 937 44 HOH HOH . J 5 HOH B 38 938 9 HOH HOH . J 5 HOH B 39 939 916 HOH HOH . J 5 HOH B 40 940 15 HOH HOH . J 5 HOH B 41 941 904 HOH HOH . J 5 HOH B 42 942 922 HOH HOH . J 5 HOH B 43 943 917 HOH HOH . J 5 HOH B 44 944 19 HOH HOH . J 5 HOH B 45 945 921 HOH HOH . J 5 HOH B 46 946 18 HOH HOH . J 5 HOH B 47 947 27 HOH HOH . J 5 HOH B 48 948 925 HOH HOH . J 5 HOH B 49 949 11 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 9.023 _atom_site.Cartn_y 6.927 _atom_site.Cartn_z 49.725 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.41 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 901 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #