data_8DIC # _model_server_result.job_id B4mIAFayRWWae2NP0h8a8Q _model_server_result.datetime_utc '2024-10-21 01:59:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dic # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 8DIC # _exptl.entry_id 8DIC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 405.469 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-bromo-3-[(3-bromo-4-chlorophenyl)methoxy]pyridine-2-carbaldehyde _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.46 _cell.angle_gamma 90 _cell.entry_id 8DIC _cell.length_a 44.346 _cell.length_b 53.814 _cell.length_c 115.824 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DIC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 A CYS 145 1_555 C C15 TNI . A TNI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? covale ? covale2 B SG CYS 145 B CYS 145 1_555 D C15 TNI . B TNI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? # _chem_comp.formula 'C13 H8 Br2 Cl N O2' _chem_comp.formula_weight 405.469 _chem_comp.id TNI _chem_comp.mon_nstd_flag . _chem_comp.name 5-bromo-3-[(3-bromo-4-chlorophenyl)methoxy]pyridine-2-carbaldehyde _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL01 C02 TNI sing 306 n n C03 C02 TNI doub 307 n y C03 C04 TNI sing 308 n y C02 C18 TNI sing 309 n y C04 C05 TNI doub 310 n y C18 C17 TNI doub 311 n y C18 BR19 TNI sing 312 n n C05 C17 TNI sing 313 n y C05 C06 TNI sing 314 n n C06 O07 TNI sing 315 n n O07 C08 TNI sing 316 n n C08 C09 TNI doub 317 n y C08 C14 TNI sing 318 n y C09 C10 TNI sing 319 n y C15 C14 TNI sing 320 n n C15 O16 TNI doub 321 n n C14 N13 TNI doub 322 n y C10 BR11 TNI sing 323 n n C10 C12 TNI doub 324 n y N13 C12 TNI sing 325 n y C15 H1 TNI sing 326 n n C17 H2 TNI sing 327 n n C03 H3 TNI sing 328 n n C04 H4 TNI sing 329 n n C06 H5 TNI sing 330 n n C06 H6 TNI sing 331 n n C09 H7 TNI sing 332 n n C12 H8 TNI sing 333 n n # _atom_sites.entry_id 8DIC _atom_sites.fract_transf_matrix[1][1] 0.02255 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004163 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00878 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TNI A 1 401 308 TNI LIG . D 2 TNI B 1 401 308 TNI LIG . E 3 HOH A 1 501 4 HOH HOH . E 3 HOH A 2 502 1 HOH HOH . E 3 HOH A 3 503 20 HOH HOH . E 3 HOH A 4 504 11 HOH HOH . E 3 HOH A 5 505 18 HOH HOH . E 3 HOH A 6 506 13 HOH HOH . E 3 HOH A 7 507 17 HOH HOH . E 3 HOH A 8 508 8 HOH HOH . E 3 HOH A 9 509 16 HOH HOH . E 3 HOH A 10 510 10 HOH HOH . E 3 HOH A 11 511 7 HOH HOH . E 3 HOH A 12 512 21 HOH HOH . E 3 HOH A 13 513 19 HOH HOH . E 3 HOH A 14 514 14 HOH HOH . E 3 HOH A 15 515 5 HOH HOH . E 3 HOH A 16 516 9 HOH HOH . E 3 HOH A 17 517 15 HOH HOH . F 3 HOH B 1 501 30 HOH HOH . F 3 HOH B 2 502 32 HOH HOH . F 3 HOH B 3 503 36 HOH HOH . F 3 HOH B 4 504 29 HOH HOH . F 3 HOH B 5 505 35 HOH HOH . F 3 HOH B 6 506 24 HOH HOH . F 3 HOH B 7 507 31 HOH HOH . F 3 HOH B 8 508 37 HOH HOH . F 3 HOH B 9 509 28 HOH HOH . F 3 HOH B 10 510 12 HOH HOH . F 3 HOH B 11 511 39 HOH HOH . F 3 HOH B 12 512 33 HOH HOH . F 3 HOH B 13 513 23 HOH HOH . F 3 HOH B 14 514 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 TNI . . . D 2 37.81 5.665 39.065 1 63.29 ? C10 TNI 401 B 1 HETATM 2 C C15 TNI . . . D 2 34.671 3.054 40.257 1 56.52 ? C15 TNI 401 B 1 HETATM 3 C C17 TNI . . . D 2 36.869 0.947 43.126 1 60.84 ? C17 TNI 401 B 1 HETATM 4 C C02 TNI . . . D 2 36.617 0.626 45.49 1 58.49 ? C02 TNI 401 B 1 HETATM 5 C C03 TNI . . . D 2 37.349 1.778 45.725 1 58.89 ? C03 TNI 401 B 1 HETATM 6 C C04 TNI . . . D 2 37.841 2.515 44.661 1 61.25 ? C04 TNI 401 B 1 HETATM 7 C C05 TNI . . . D 2 37.601 2.099 43.36 1 61.07 ? C05 TNI 401 B 1 HETATM 8 C C06 TNI . . . D 2 38.143 2.912 42.186 1 68.09 ? C06 TNI 401 B 1 HETATM 9 C C08 TNI . . . D 2 37.103 3.73 40.248 1 66.04 ? C08 TNI 401 B 1 HETATM 10 C C09 TNI . . . D 2 38.133 4.576 39.864 1 66.21 ? C09 TNI 401 B 1 HETATM 11 C C12 TNI . . . D 2 36.494 5.867 38.684 1 61.34 ? C12 TNI 401 B 1 HETATM 12 C C14 TNI . . . D 2 35.805 3.986 39.834 1 63.78 ? C14 TNI 401 B 1 HETATM 13 C C18 TNI . . . D 2 36.377 0.21 44.19 1 60.63 ? C18 TNI 401 B 1 HETATM 14 N N13 TNI . . . D 2 35.549 5.034 39.075 1 58.53 ? N13 TNI 401 B 1 HETATM 15 O O07 TNI . . . D 2 37.374 2.618 41.054 1 66.65 ? O07 TNI 401 B 1 HETATM 16 O O16 TNI . . . D 2 33.91 2.641 39.447 1 56.12 ? O16 TNI 401 B 1 HETATM 17 BR BR11 TNI . . . D 2 39.195 6.895 38.485 0.42 80.23 ? BR11 TNI 401 B 1 HETATM 18 BR BR19 TNI . . . D 2 35.351 -1.404 43.861 0.18 71.22 ? BR19 TNI 401 B 1 HETATM 19 CL CL01 TNI . . . D 2 35.983 -0.324 46.862 1 57.91 ? CL01 TNI 401 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 19 #