data_8DIF # _model_server_result.job_id l88sZZtZzw0Du94TifKNsQ _model_server_result.datetime_utc '2025-01-28 03:35:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dif # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8DIF # _exptl.entry_id 8DIF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 342.187 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-bromo-3-[(naphthalen-2-yl)methoxy]pyridine-2-carbaldehyde _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.15 _cell.angle_gamma 90 _cell.entry_id 8DIF _cell.length_a 44.897 _cell.length_b 53.624 _cell.length_c 115.04 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DIF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 A CYS 145 1_555 C C06 U1R . A U1R 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? covale ? covale2 B SG CYS 145 B CYS 145 1_555 D C06 U1R . B U1R 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.736 ? # _chem_comp.formula 'C17 H12 Br N O2' _chem_comp.formula_weight 342.187 _chem_comp.id U1R _chem_comp.mon_nstd_flag . _chem_comp.name 5-bromo-3-[(naphthalen-2-yl)methoxy]pyridine-2-carbaldehyde _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C15 U1R doub 358 n y C16 C17 U1R sing 359 n y C15 C14 U1R sing 360 n y C17 C18 U1R doub 361 n y C14 C13 U1R sing 362 n y C14 C19 U1R doub 363 n y C13 C12 U1R doub 364 n y C18 C19 U1R sing 365 n y C19 C20 U1R sing 366 n y C12 C11 U1R sing 367 n y C20 C11 U1R doub 368 n y C11 C10 U1R sing 369 n n C10 O09 U1R sing 370 n n O09 C08 U1R sing 371 n n C08 C21 U1R doub 372 n y C08 C05 U1R sing 373 n y C21 C02 U1R sing 374 n y C06 C05 U1R sing 375 n n C06 O07 U1R doub 376 n n C05 N04 U1R doub 377 n y C02 BR01 U1R sing 378 n n C02 C03 U1R doub 379 n y N04 C03 U1R sing 380 n y C10 H1 U1R sing 381 n n C10 H2 U1R sing 382 n n C13 H3 U1R sing 383 n n C15 H4 U1R sing 384 n n C17 H5 U1R sing 385 n n C20 H6 U1R sing 386 n n C21 H7 U1R sing 387 n n C03 H8 U1R sing 388 n n C06 H9 U1R sing 389 n n C12 H10 U1R sing 390 n n C16 H11 U1R sing 391 n n C18 H12 U1R sing 392 n n # _atom_sites.entry_id 8DIF _atom_sites.fract_transf_matrix[1][1] 0.022273 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00439 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018648 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00886 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 U1R A 1 401 307 U1R LIG . D 2 U1R B 1 401 307 U1R LIG . E 3 HOH A 1 501 27 HOH HOH . E 3 HOH A 2 502 19 HOH HOH . E 3 HOH A 3 503 55 HOH HOH . E 3 HOH A 4 504 6 HOH HOH . E 3 HOH A 5 505 7 HOH HOH . E 3 HOH A 6 506 18 HOH HOH . E 3 HOH A 7 507 32 HOH HOH . E 3 HOH A 8 508 2 HOH HOH . E 3 HOH A 9 509 23 HOH HOH . E 3 HOH A 10 510 37 HOH HOH . E 3 HOH A 11 511 8 HOH HOH . E 3 HOH A 12 512 26 HOH HOH . E 3 HOH A 13 513 29 HOH HOH . E 3 HOH A 14 514 9 HOH HOH . E 3 HOH A 15 515 28 HOH HOH . E 3 HOH A 16 516 20 HOH HOH . E 3 HOH A 17 517 36 HOH HOH . E 3 HOH A 18 518 21 HOH HOH . E 3 HOH A 19 519 30 HOH HOH . E 3 HOH A 20 520 34 HOH HOH . E 3 HOH A 21 521 17 HOH HOH . E 3 HOH A 22 522 35 HOH HOH . E 3 HOH A 23 523 22 HOH HOH . E 3 HOH A 24 524 33 HOH HOH . F 3 HOH B 1 501 50 HOH HOH . F 3 HOH B 2 502 49 HOH HOH . F 3 HOH B 3 503 13 HOH HOH . F 3 HOH B 4 504 46 HOH HOH . F 3 HOH B 5 505 16 HOH HOH . F 3 HOH B 6 506 1 HOH HOH . F 3 HOH B 7 507 11 HOH HOH . F 3 HOH B 8 508 41 HOH HOH . F 3 HOH B 9 509 42 HOH HOH . F 3 HOH B 10 510 54 HOH HOH . F 3 HOH B 11 511 12 HOH HOH . F 3 HOH B 12 512 44 HOH HOH . F 3 HOH B 13 513 43 HOH HOH . F 3 HOH B 14 514 14 HOH HOH . F 3 HOH B 15 515 3 HOH HOH . F 3 HOH B 16 516 24 HOH HOH . F 3 HOH B 17 517 45 HOH HOH . F 3 HOH B 18 518 10 HOH HOH . F 3 HOH B 19 519 5 HOH HOH . F 3 HOH B 20 520 4 HOH HOH . F 3 HOH B 21 521 53 HOH HOH . F 3 HOH B 22 522 48 HOH HOH . F 3 HOH B 23 523 25 HOH HOH . F 3 HOH B 24 524 51 HOH HOH . F 3 HOH B 25 525 47 HOH HOH . F 3 HOH B 26 526 15 HOH HOH . F 3 HOH B 27 527 38 HOH HOH . F 3 HOH B 28 528 52 HOH HOH . F 3 HOH B 29 529 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 U1R . . . C 2 -4.053 2.038 14.178 1 51.41 ? C10 U1R 401 A 1 HETATM 2 C C13 U1R . . . C 2 -2.394 1.068 10.895 1 43.58 ? C13 U1R 401 A 1 HETATM 3 C C15 U1R . . . C 2 -2.254 -1.063 9.816 1 48.15 ? C15 U1R 401 A 1 HETATM 4 C C17 U1R . . . C 2 -3.183 -3.009 10.733 1 54.14 ? C17 U1R 401 A 1 HETATM 5 C C20 U1R . . . C 2 -3.869 -0.1 12.988 1 52.22 ? C20 U1R 401 A 1 HETATM 6 C C21 U1R . . . C 2 -3.913 4.167 16.058 1 47.27 ? C21 U1R 401 A 1 HETATM 7 C C02 U1R . . . C 2 -3.862 5.052 17.08 1 53.79 ? C02 U1R 401 A 1 HETATM 8 C C03 U1R . . . C 2 -2.712 5.056 17.957 1 47.66 ? C03 U1R 401 A 1 HETATM 9 C C05 U1R . . . C 2 -1.76 3.351 16.777 1 47.67 ? C05 U1R 401 A 1 HETATM 10 C C06 U1R . . . C 2 -0.588 2.526 16.671 1 47.75 ? C06 U1R 401 A 1 HETATM 11 C C08 U1R . . . C 2 -2.837 3.274 15.863 1 51.35 ? C08 U1R 401 A 1 HETATM 12 C C11 U1R . . . C 2 -3.623 1.203 13.023 1 50.79 ? C11 U1R 401 A 1 HETATM 13 C C12 U1R . . . C 2 -2.869 1.777 11.97 1 51.63 ? C12 U1R 401 A 1 HETATM 14 C C14 U1R . . . C 2 -2.696 -0.291 10.861 1 51.68 ? C14 U1R 401 A 1 HETATM 15 C C16 U1R . . . C 2 -2.5 -2.421 9.727 1 48.77 ? C16 U1R 401 A 1 HETATM 16 C C18 U1R . . . C 2 -3.638 -2.245 11.798 1 56.81 ? C18 U1R 401 A 1 HETATM 17 C C19 U1R . . . C 2 -3.395 -0.859 11.861 1 53.41 ? C19 U1R 401 A 1 HETATM 18 N N04 U1R . . . C 2 -1.742 4.241 17.764 1 47.98 ? N04 U1R 401 A 1 HETATM 19 O O07 U1R . . . C 2 0.071 2.421 17.591 1 47.68 ? O07 U1R 401 A 1 HETATM 20 O O09 U1R . . . C 2 -2.861 2.37 14.829 1 51.47 ? O09 U1R 401 A 1 HETATM 21 BR BR01 U1R . . . C 2 -5.288 6.292 17.396 1 86.51 ? BR01 U1R 401 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #