data_8DIK
#
_model_server_result.job_id            LBd5xdfGOylL_lIOeX0ocQ 
_model_server_result.datetime_utc      '2024-10-19 01:32:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dik 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    8DIK 
#
_exptl.entry_id    8DIK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          89.96 
_cell.angle_gamma         90 
_cell.entry_id            8DIK 
_cell.length_a            24.592 
_cell.length_b            62.947 
_cell.length_c            78.013 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DIK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 70 n n 
PA O2A FAD sing 71 n n 
PA O5B FAD sing 72 n n 
PA O3P FAD sing 73 n n 
O2A HOA2 FAD sing 74 n n 
O5B C5B FAD sing 75 n n 
C5B C4B FAD sing 76 n n 
C5B H51A FAD sing 77 n n 
C5B H52A FAD sing 78 n n 
C4B O4B FAD sing 79 n n 
C4B C3B FAD sing 80 n n 
C4B H4B FAD sing 81 n n 
O4B C1B FAD sing 82 n n 
C3B O3B FAD sing 83 n n 
C3B C2B FAD sing 84 n n 
C3B H3B FAD sing 85 n n 
O3B HO3A FAD sing 86 n n 
C2B O2B FAD sing 87 n n 
C2B C1B FAD sing 88 n n 
C2B H2B FAD sing 89 n n 
O2B HO2A FAD sing 90 n n 
C1B N9A FAD sing 91 n n 
C1B H1B FAD sing 92 n n 
N9A C8A FAD sing 93 n y 
N9A C4A FAD sing 94 n y 
C8A N7A FAD doub 95 n y 
C8A H8A FAD sing 96 n n 
N7A C5A FAD sing 97 n y 
C5A C6A FAD sing 98 n y 
C5A C4A FAD doub 99 n y 
C6A N6A FAD sing 100 n n 
C6A N1A FAD doub 101 n y 
N6A H61A FAD sing 102 n n 
N6A H62A FAD sing 103 n n 
N1A C2A FAD sing 104 n y 
C2A N3A FAD doub 105 n y 
C2A H2A FAD sing 106 n n 
N3A C4A FAD sing 107 n y 
N1 C2 FAD sing 108 n n 
N1 C10 FAD doub 109 n n 
C2 O2 FAD doub 110 n n 
C2 N3 FAD sing 111 n n 
N3 C4 FAD sing 112 n n 
N3 HN3 FAD sing 113 n n 
C4 O4 FAD doub 114 n n 
C4 C4X FAD sing 115 n n 
C4X N5 FAD doub 116 n n 
C4X C10 FAD sing 117 n n 
N5 C5X FAD sing 118 n n 
C5X C6 FAD doub 119 n y 
C5X C9A FAD sing 120 n y 
C6 C7 FAD sing 121 n y 
C6 H6 FAD sing 122 n n 
C7 C7M FAD sing 123 n n 
C7 C8 FAD doub 124 n y 
C7M HM71 FAD sing 125 n n 
C7M HM72 FAD sing 126 n n 
C7M HM73 FAD sing 127 n n 
C8 C8M FAD sing 128 n n 
C8 C9 FAD sing 129 n y 
C8M HM81 FAD sing 130 n n 
C8M HM82 FAD sing 131 n n 
C8M HM83 FAD sing 132 n n 
C9 C9A FAD doub 133 n y 
C9 H9 FAD sing 134 n n 
C9A N10 FAD sing 135 n n 
N10 C10 FAD sing 136 n n 
N10 C1' FAD sing 137 n n 
C1' C2' FAD sing 138 n n 
C1' "H1'1" FAD sing 139 n n 
C1' "H1'2" FAD sing 140 n n 
C2' O2' FAD sing 141 n n 
C2' C3' FAD sing 142 n n 
C2' H2' FAD sing 143 n n 
O2' HO2' FAD sing 144 n n 
C3' O3' FAD sing 145 n n 
C3' C4' FAD sing 146 n n 
C3' H3' FAD sing 147 n n 
O3' HO3' FAD sing 148 n n 
C4' O4' FAD sing 149 n n 
C4' C5' FAD sing 150 n n 
C4' H4' FAD sing 151 n n 
O4' HO4' FAD sing 152 n n 
C5' O5' FAD sing 153 n n 
C5' "H5'1" FAD sing 154 n n 
C5' "H5'2" FAD sing 155 n n 
O5' P FAD sing 156 n n 
P O1P FAD doub 157 n n 
P O2P FAD sing 158 n n 
P O3P FAD sing 159 n n 
O2P HOP2 FAD sing 160 n n 
#
_atom_sites.entry_id                     8DIK 
_atom_sites.fract_transf_matrix[1][1]    0.040664 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    -0.000029 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015886 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012818 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 501 501 FAD FAD . 
D 2 FAD B 1 201 507 FAD FAD . 
E 3 HOH A 1 601 52 HOH HOH . 
E 3 HOH A 2 602 28 HOH HOH . 
E 3 HOH A 3 603 46 HOH HOH . 
E 3 HOH A 4 604 8 HOH HOH . 
E 3 HOH A 5 605 10 HOH HOH . 
E 3 HOH A 6 606 15 HOH HOH . 
E 3 HOH A 7 607 14 HOH HOH . 
E 3 HOH A 8 608 24 HOH HOH . 
E 3 HOH A 9 609 43 HOH HOH . 
E 3 HOH A 10 610 25 HOH HOH . 
E 3 HOH A 11 611 3 HOH HOH . 
E 3 HOH A 12 612 18 HOH HOH . 
E 3 HOH A 13 613 11 HOH HOH . 
E 3 HOH A 14 614 9 HOH HOH . 
E 3 HOH A 15 615 48 HOH HOH . 
E 3 HOH A 16 616 1 HOH HOH . 
E 3 HOH A 17 617 23 HOH HOH . 
E 3 HOH A 18 618 27 HOH HOH . 
E 3 HOH A 19 619 34 HOH HOH . 
E 3 HOH A 20 620 4 HOH HOH . 
E 3 HOH A 21 621 47 HOH HOH . 
E 3 HOH A 22 622 49 HOH HOH . 
E 3 HOH A 23 623 30 HOH HOH . 
E 3 HOH A 24 624 12 HOH HOH . 
E 3 HOH A 25 625 13 HOH HOH . 
E 3 HOH A 26 626 6 HOH HOH . 
F 3 HOH B 1 301 41 HOH HOH . 
F 3 HOH B 2 302 17 HOH HOH . 
F 3 HOH B 3 303 7 HOH HOH . 
F 3 HOH B 4 304 29 HOH HOH . 
F 3 HOH B 5 305 22 HOH HOH . 
F 3 HOH B 6 306 42 HOH HOH . 
F 3 HOH B 7 307 16 HOH HOH . 
F 3 HOH B 8 308 2 HOH HOH . 
F 3 HOH B 9 309 5 HOH HOH . 
F 3 HOH B 10 310 40 HOH HOH . 
F 3 HOH B 11 311 19 HOH HOH . 
F 3 HOH B 12 312 31 HOH HOH . 
F 3 HOH B 13 313 37 HOH HOH . 
F 3 HOH B 14 314 50 HOH HOH . 
F 3 HOH B 15 315 38 HOH HOH . 
F 3 HOH B 16 316 36 HOH HOH . 
F 3 HOH B 17 317 21 HOH HOH . 
F 3 HOH B 18 318 44 HOH HOH . 
F 3 HOH B 19 319 39 HOH HOH . 
F 3 HOH B 20 320 51 HOH HOH . 
F 3 HOH B 21 321 26 HOH HOH . 
F 3 HOH B 22 322 20 HOH HOH . 
F 3 HOH B 23 323 45 HOH HOH . 
F 3 HOH B 24 324 35 HOH HOH . 
F 3 HOH B 25 325 33 HOH HOH . 
F 3 HOH B 26 326 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . D 2 -2.134 11.993 -1.627 0.81 44.78 ? PA FAD 201 B 1 
HETATM 2 O O1A FAD . . . D 2 -1.301 10.813 -1.965 0.81 50.8 ? O1A FAD 201 B 1 
HETATM 3 O O2A FAD . . . D 2 -1.834 13.264 -2.427 0.81 44.44 ? O2A FAD 201 B 1 
HETATM 4 O O5B FAD . . . D 2 -3.666 11.661 -1.787 0.81 44.31 ? O5B FAD 201 B 1 
HETATM 5 C C5B FAD . . . D 2 -4.153 10.307 -1.69 0.81 42.66 ? C5B FAD 201 B 1 
HETATM 6 C C4B FAD . . . D 2 -4.9 9.947 -2.95 0.81 43.51 ? C4B FAD 201 B 1 
HETATM 7 O O4B FAD . . . D 2 -5.765 11.035 -3.334 0.81 45.55 ? O4B FAD 201 B 1 
HETATM 8 C C3B FAD . . . D 2 -4.038 9.708 -4.179 0.81 45.49 ? C3B FAD 201 B 1 
HETATM 9 O O3B FAD . . . D 2 -3.512 8.386 -4.184 0.81 44.67 ? O3B FAD 201 B 1 
HETATM 10 C C2B FAD . . . D 2 -5.035 9.932 -5.32 0.81 45.14 ? C2B FAD 201 B 1 
HETATM 11 O O2B FAD . . . D 2 -5.764 8.75 -5.629 0.81 48.96 ? O2B FAD 201 B 1 
HETATM 12 C C1B FAD . . . D 2 -5.97 11.002 -4.738 0.81 44.5 ? C1B FAD 201 B 1 
HETATM 13 N N9A FAD . . . D 2 -5.749 12.344 -5.271 0.81 45.74 ? N9A FAD 201 B 1 
HETATM 14 C C8A FAD . . . D 2 -4.974 13.334 -4.728 0.81 45.93 ? C8A FAD 201 B 1 
HETATM 15 N N7A FAD . . . D 2 -4.958 14.444 -5.426 0.81 45.15 ? N7A FAD 201 B 1 
HETATM 16 C C5A FAD . . . D 2 -5.78 14.165 -6.507 0.81 43 ? C5A FAD 201 B 1 
HETATM 17 C C6A FAD . . . D 2 -6.181 14.928 -7.62 0.81 42.35 ? C6A FAD 201 B 1 
HETATM 18 N N6A FAD . . . D 2 -5.788 16.187 -7.838 0.81 41.05 ? N6A FAD 201 B 1 
HETATM 19 N N1A FAD . . . D 2 -7.01 14.347 -8.515 0.81 43.99 ? N1A FAD 201 B 1 
HETATM 20 C C2A FAD . . . D 2 -7.406 13.089 -8.303 0.81 45.4 ? C2A FAD 201 B 1 
HETATM 21 N N3A FAD . . . D 2 -7.096 12.273 -7.294 0.81 42.72 ? N3A FAD 201 B 1 
HETATM 22 C C4A FAD . . . D 2 -6.275 12.872 -6.424 0.81 42.18 ? C4A FAD 201 B 1 
HETATM 23 N N1 FAD . . . D 2 -7.142 17.014 3.472 0.81 37.78 ? N1 FAD 201 B 1 
HETATM 24 C C2 FAD . . . D 2 -6.976 17.044 4.826 0.81 37.77 ? C2 FAD 201 B 1 
HETATM 25 O O2 FAD . . . D 2 -6.29 16.202 5.415 0.81 39.76 ? O2 FAD 201 B 1 
HETATM 26 N N3 FAD . . . D 2 -7.588 18.038 5.57 0.81 37.59 ? N3 FAD 201 B 1 
HETATM 27 C C4 FAD . . . D 2 -8.383 19.049 5.076 0.81 36.65 ? C4 FAD 201 B 1 
HETATM 28 O O4 FAD . . . D 2 -8.874 19.879 5.839 0.81 36.61 ? O4 FAD 201 B 1 
HETATM 29 C C4X FAD . . . D 2 -8.554 19.009 3.636 0.81 39.88 ? C4X FAD 201 B 1 
HETATM 30 N N5 FAD . . . D 2 -9.292 19.928 3.081 0.81 38.83 ? N5 FAD 201 B 1 
HETATM 31 C C5X FAD . . . D 2 -9.453 19.888 1.707 0.81 38.9 ? C5X FAD 201 B 1 
HETATM 32 C C6 FAD . . . D 2 -10.241 20.863 1.095 0.81 38.02 ? C6 FAD 201 B 1 
HETATM 33 C C7 FAD . . . D 2 -10.433 20.867 -0.281 0.81 37.1 ? C7 FAD 201 B 1 
HETATM 34 C C7M FAD . . . D 2 -11.289 21.939 -0.906 0.81 39.49 ? C7M FAD 201 B 1 
HETATM 35 C C8 FAD . . . D 2 -9.83 19.877 -1.072 0.81 38.71 ? C8 FAD 201 B 1 
HETATM 36 C C8M FAD . . . D 2 -10.018 19.853 -2.564 0.81 39.31 ? C8M FAD 201 B 1 
HETATM 37 C C9 FAD . . . D 2 -9.043 18.9 -0.463 0.81 38.35 ? C9 FAD 201 B 1 
HETATM 38 C C9A FAD . . . D 2 -8.853 18.9 0.908 0.81 37.8 ? C9A FAD 201 B 1 
HETATM 39 N N10 FAD . . . D 2 -8.062 17.928 1.557 0.81 35.47 ? N10 FAD 201 B 1 
HETATM 40 C C10 FAD . . . D 2 -7.891 17.95 2.918 0.81 37.61 ? C10 FAD 201 B 1 
HETATM 41 C C1' FAD . . . D 2 -7.406 16.862 0.784 0.81 38.18 ? C1' FAD 201 B 1 
HETATM 42 C C2' FAD . . . D 2 -5.978 17.208 0.377 0.81 38.28 ? C2' FAD 201 B 1 
HETATM 43 O O2' FAD . . . D 2 -5.982 18.118 -0.724 0.81 40.77 ? O2' FAD 201 B 1 
HETATM 44 C C3' FAD . . . D 2 -5.247 15.928 -0.029 0.81 38.99 ? C3' FAD 201 B 1 
HETATM 45 O O3' FAD . . . D 2 -5.956 15.312 -1.098 0.81 39.2 ? O3' FAD 201 B 1 
HETATM 46 C C4' FAD . . . D 2 -5.086 14.917 1.106 0.81 38.93 ? C4' FAD 201 B 1 
HETATM 47 O O4' FAD . . . D 2 -4.763 15.607 2.314 0.81 41.25 ? O4' FAD 201 B 1 
HETATM 48 C C5' FAD . . . D 2 -4.041 13.864 0.806 0.81 42.17 ? C5' FAD 201 B 1 
HETATM 49 O O5' FAD . . . D 2 -2.729 14.449 0.949 0.81 45.04 ? O5' FAD 201 B 1 
HETATM 50 P P FAD . . . D 2 -1.428 13.629 0.609 0.81 48.48 ? P FAD 201 B 1 
HETATM 51 O O1P FAD . . . D 2 -0.561 14.381 -0.405 0.81 49.05 ? O1P FAD 201 B 1 
HETATM 52 O O2P FAD . . . D 2 -0.716 13.269 1.86 0.81 47.94 ? O2P FAD 201 B 1 
HETATM 53 O O3P FAD . . . D 2 -2.011 12.318 -0.08 0.81 42.88 ? O3P FAD 201 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#